David Pincus, Ph.D. - Publications

Affiliations: 
2012 Cell Biology University of California, San Francisco, San Francisco, CA 
Area:
Secretion, UPR

25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Damon JR, Pincus D, Ploegh HL. tRNA thiolation links translation to stress responses in Saccharomyces cerevisiae. Molecular Biology of the Cell. 26: 270-82. PMID 25392298 DOI: 10.1091/mbc.E14-06-1145  1
2015 Pincus DL, Chakrabarti S, Thirumalai D. Helicase Processivity and Not the Unwinding Velocity Exhibits Universal Increase with Force Biophysical Journal. 109: 220-230. DOI: 10.1016/j.bpj.2015.05.020  1
2014 van Anken E, Pincus D, Coyle S, Aragón T, Osman C, Lari F, Gómez Puerta S, Korennykh AV, Walter P. Specificity in endoplasmic reticulum-stress signaling in yeast entails a step-wise engagement of HAC1 mRNA to clusters of the stress sensor Ire1. Elife. 3: e05031. PMID 25549299 DOI: 10.7554/eLife.05031  1
2014 Pincus D, Aranda-Díaz A, Zuleta IA, Walter P, El-Samad H. Delayed Ras/PKA signaling augments the unfolded protein response. Proceedings of the National Academy of Sciences of the United States of America. 111: 14800-5. PMID 25275008 DOI: 10.1073/pnas.1409588111  1
2013 Pincus DL, Thirumalai D. Force-induced unzipping transitions in an athermal crowded environment. The Journal of Physical Chemistry. B. 117: 13107-14. PMID 23789729 DOI: 10.1021/jp402922q  1
2013 Vidal SE, Pincus D, Stewart-Ornstein J, El-Samad H. Formation of subnuclear foci is a unique spatial behavior of mating MAPKs during hyperosmotic stress. Cell Reports. 3: 328-34. PMID 23416049 DOI: 10.1016/j.celrep.2013.01.022  1
2013 Gardner BM, Pincus D, Gotthardt K, Gallagher CM, Walter P. Endoplasmic reticulum stress sensing in the unfolded protein response. Cold Spring Harbor Perspectives in Biology. 5: a013169. PMID 23388626 DOI: 10.1101/cshperspect.a013169  1
2013 Pincus D, Ryan CJ, Smith RD, Brent R, Resnekov O. Correction: Assigning quantitative function to post-translational modifications reveals multiple sites of phosphorylation that tune yeast pheromone signaling output (PLoS ONE) Plos One. 8. DOI: 10.1371/annotation/06dfa4e4-30f5-4d37-8559-0f2a9d11f0de  1
2012 Fordyce PM, Pincus D, Kimmig P, Nelson CS, El-Samad H, Walter P, DeRisi JL. Basic leucine zipper transcription factor Hac1 binds DNA in two distinct modes as revealed by microfluidic analyses. Proceedings of the National Academy of Sciences of the United States of America. 109: E3084-93. PMID 23054834 DOI: 10.1073/pnas.1212457109  1
2012 Pincus D, Walter P. A first line of defense against ER stress. The Journal of Cell Biology. 198: 277-9. PMID 22869593 DOI: 10.1083/jcb.201207076  1
2011 Thomson TM, Benjamin KR, Bush A, Love T, Pincus D, Resnekov O, Yu RC, Gordon A, Colman-Lerner A, Endy D, Brent R. Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range. Proceedings of the National Academy of Sciences of the United States of America. 108: 20265-70. PMID 22114196 DOI: 10.1073/pnas.1004042108  1
2011 Milias-Argeitis A, Summers S, Stewart-Ornstein J, Zuleta I, Pincus D, El-Samad H, Khammash M, Lygeros J. In silico feedback for in vivo regulation of a gene expression circuit. Nature Biotechnology. 29: 1114-6. PMID 22057053 DOI: 10.1038/nbt.2018  1
2011 Rubio C, Pincus D, Korennykh A, Schuck S, El-Samad H, Walter P. Homeostatic adaptation to endoplasmic reticulum stress depends on Ire1 kinase activity. The Journal of Cell Biology. 193: 171-84. PMID 21444684 DOI: 10.1083/jcb.201007077  1
2010 Pincus D, Chevalier MW, Aragón T, van Anken E, Vidal SE, El-Samad H, Walter P. BiP binding to the ER-stress sensor Ire1 tunes the homeostatic behavior of the unfolded protein response. Plos Biology. 8: e1000415. PMID 20625545 DOI: 10.1371/journal.pbio.1000415  1
2010 Pincus D, Benjamin K, Burbulis I, Tsong AE, Resnekov O. Reagents for investigating MAPK signalling in model yeast species. Yeast (Chichester, England). 27: 423-30. PMID 20162536 DOI: 10.1002/yea.1758  1
2009 Hyeon C, Morrison G, Pincus DL, Thirumalai D. Refolding dynamics of stretched biopolymers upon force quench. Proceedings of the National Academy of Sciences of the United States of America. 106: 20288-93. PMID 19915145 DOI: 10.1073/pnas.0905764106  1
2009 Cho SS, Pincus DL, Thirumalai D. Assembly mechanisms of RNA pseudoknots are determined by the stabilities of constituent secondary structures. Proceedings of the National Academy of Sciences of the United States of America. 106: 17349-54. PMID 19805055 DOI: 10.1073/pnas.0906625106  1
2009 Aragón T, van Anken E, Pincus D, Serafimova IM, Korennykh AV, Rubio CA, Walter P. Messenger RNA targeting to endoplasmic reticulum stress signalling sites. Nature. 457: 736-40. PMID 19079237 DOI: 10.1038/nature07641  1
2009 Pincus DL, Thirumalai D. Crowding effects on the mechanical stability and unfolding pathways of ubiquitin. The Journal of Physical Chemistry. B. 113: 359-68. PMID 19072020 DOI: 10.1021/jp807755b  1
2008 Pincus DL, Cho SS, Hyeon C, Thirumalai D. Minimal models for proteins and RNA from folding to function. Progress in Molecular Biology and Translational Science. 84: 203-50. PMID 19121703 DOI: 10.1016/S0079-6603(08)00406-6  1
2008 Pincus D, Letunic I, Bork P, Lim WA. Evolution of the phospho-tyrosine signaling machinery in premetazoan lineages. Proceedings of the National Academy of Sciences of the United States of America. 105: 9680-4. PMID 18599463 DOI: 10.1073/pnas.0803161105  1
2008 Pincus DL, Hyeon C, Thirumalai D. Effects of trimethylamine N-oxide (TMAO) and crowding agents on the stability of RNA hairpins. Journal of the American Chemical Society. 130: 7364-72. PMID 18479134 DOI: 10.1021/ja078326w  1
2008 King N, Westbrook MJ, Young SL, Kuo A, Abedin M, Chapman J, Fairclough S, Hellsten U, Isogai Y, Letunic I, Marr M, Pincus D, Putnam N, Rokas A, Wright KJ, et al. The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. Nature. 451: 783-8. PMID 18273011 DOI: 10.1038/nature06617  1
2006 Zhu K, Pincus DL, Zhao S, Friesner RA. Long loop prediction using the protein local optimization program. Proteins. 65: 438-52. PMID 16927380 DOI: 10.1002/prot.21040  1
2004 Jacobson MP, Pincus DL, Rapp CS, Day TJ, Honig B, Shaw DE, Friesner RA. A hierarchical approach to all-atom protein loop prediction. Proteins. 55: 351-67. PMID 15048827 DOI: 10.1002/prot.10613  1
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