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Nizar N. Batada, Ph.D. - Publications

Affiliations: 
2005 Stanford University, Palo Alto, CA 
Area:
computational structural biology
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15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Boufea K, Seth S, Batada NN. scID Uses Discriminant Analysis to Identify Transcriptionally Equivalent Cell Types across Single-Cell RNA-Seq Data with Batch Effect. Iscience. 23: 100914. PMID 32151972 DOI: 10.1016/J.Isci.2020.100914  0.325
2019 Rajakulendran N, Rowland KJ, Selvadurai HJ, Ahmadi M, Park NI, Naumenko S, Dolma S, Ward RJ, So M, Lee L, MacLeod G, Pasiliao C, Brandon C, Clarke ID, Cusimano MD, ... ... Batada N, et al. Wnt and Notch signaling govern self-renewal and differentiation in a subset of human glioblastoma stem cells. Genes & Development. PMID 30842215 DOI: 10.1101/Gad.321968.118  0.338
2017 Kan Y, Batada NN, Hendrickson EA. Human somatic cells deficient for RAD52 are impaired for viral integration and compromised for most aspects of homology-directed repair. Dna Repair. 55: 64-75. PMID 28549257 DOI: 10.1016/J.Dnarep.2017.04.006  0.355
2016 Rajakulendran N, Selvadurai H, Rowland K, Park N, Batada N, Dirks P, Angers S. Abstract B14: Wnt signaling circuits in glioblastoma multiforme Molecular Cancer Research. 14. DOI: 10.1158/1557-3125.Devbiolca15-B14  0.376
2015 Ruiz S, Lopez-Contreras AJ, Gabut M, Marion RM, Gutierrez-Martinez P, Bua S, Ramirez O, Olalde I, Rodrigo-Perez S, Li H, Marques-Bonet T, Serrano M, Blasco MA, Batada NN, Fernandez-Capetillo O. Limiting replication stress during somatic cell reprogramming reduces genomic instability in induced pluripotent stem cells. Nature Communications. 6: 8036. PMID 26292731 DOI: 10.1038/Ncomms9036  0.304
2014 Planello AC, Ji J, Sharma V, Singhania R, Mbabaali F, Müller F, Alfaro JA, Bock C, De Carvalho DD, Batada NN. Aberrant DNA methylation reprogramming during induced pluripotent stem cell generation is dependent on the choice of reprogramming factors. Cell Regeneration (London, England). 3: 4. PMID 25408883 DOI: 10.1186/2045-9769-3-4  0.303
2014 Dulev S, Tkach J, Lin S, Batada NN. SET8 methyltransferase activity during the DNA double-strand break response is required for recruitment of 53BP1. Embo Reports. 15: 1163-74. PMID 25252681 DOI: 10.15252/Embr.201439434  0.305
2014 Ji J, Sharma V, Qi S, Guarch ME, Zhao P, Luo Z, Fan W, Wang Y, Mbabaali F, Neculai D, Esteban MA, McPherson JD, Batada NN. Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells. Stem Cell Reports. 2: 44-51. PMID 24511469 DOI: 10.1016/J.Stemcr.2013.11.004  0.325
2011 Hussein SM, Batada NN, Vuoristo S, Ching RW, Autio R, Närvä E, Ng S, Sourour M, Hämäläinen R, Olsson C, Lundin K, Mikkola M, Trokovic R, Peitz M, Brüstle O, et al. Copy number variation and selection during reprogramming to pluripotency. Nature. 471: 58-62. PMID 21368824 DOI: 10.1038/Nature09871  0.325
2006 Batada NN, Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hurst LD, Tyers M. Stratus not altocumulus: a new view of the yeast protein interaction network. Plos Biology. 4: e317. PMID 16984220 DOI: 10.1371/Journal.Pbio.0040317  0.311
2006 Batada NN, Hurst LD, Tyers M. Evolutionary and physiological importance of hub proteins. Plos Computational Biology. 2: e88. PMID 16839197 DOI: 10.1371/Journal.Pcbi.0020088  0.332
2006 Batada NN, Shepp LA, Siegmund DO, Levitt M. Spatial regulation and the rate of signal transduction activation. Plos Computational Biology. 2: e44. PMID 16699596 DOI: 10.1371/Journal.Pcbi.0020044  0.488
2005 Batada NN, Shepp LA, Siegmund DO, Levitt M. Spatial control of signal transduction activation: a brownian motion model of receptor dimerization on a spherical cell surface Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.0020044.Eor  0.417
2004 Batada NN, Westover KD, Bushnell DA, Levitt M, Kornberg RD. Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center. Proceedings of the National Academy of Sciences of the United States of America. 101: 17361-4. PMID 15574497 DOI: 10.1073/Pnas.0408168101  0.394
2004 Batada NN, Shepp LA, Siegmund DO. Stochastic model of protein-protein interaction: why signaling proteins need to be colocalized. Proceedings of the National Academy of Sciences of the United States of America. 101: 6445-9. PMID 15096590 DOI: 10.1073/Pnas.0401314101  0.349
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