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Linh M. Tran, Ph.D. - Publications

Affiliations: 
2008 University of California, Los Angeles, Los Angeles, CA 
Area:
Chemical and Biomolecular Engineering
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Yanagawa J, Tran LM, Salehi-Rad R, Lim RJ, Dumitras C, Fung E, Wallace WD, Prosper AE, Fishbein G, Shea C, Hong R, Kahangi B, Deng JJ, Gower AC, Liu B, et al. Single-cell characterization of pulmonary nodules implicates suppression of immunosurveillance across early stages of lung adenocarcinoma. Cancer Research. PMID 37477508 DOI: 10.1158/0008-5472.CAN-23-0128  0.494
2020 Dost AFM, Moye AL, Vedaie M, Tran LM, Fung E, Heinze D, Villacorta-Martin C, Huang J, Hekman R, Kwan JH, Blum BC, Louie SM, Rowbotham SP, Sainz de Aja J, Piper ME, et al. Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells. Cell Stem Cell. PMID 32891189 DOI: 10.1016/J.Stem.2020.07.022  0.57
2020 Cheng J, Huang Y, Zhang X, Yu Y, Wu S, Jiao J, Tran L, Zhang W, Liu R, Zhang L, Wang M, Wang M, Yan W, Wu Y, Chi F, et al. TRIM21 and PHLDA3 negatively regulate the crosstalk between the PI3K/AKT pathway and PPP metabolism. Nature Communications. 11: 1880. PMID 32312982 DOI: 10.1038/S41467-020-15819-3  0.354
2020 Lee MH, Yanagawa J, Tran L, Walser TC, Bisht B, Fung E, Park SJ, Zeng G, Krysan K, Wallace WD, Paul MK, Girard L, Gao B, Minna JD, Dubinett SM, et al. FRA1 contributes to MEK-ERK pathway-dependent PD-L1 upregulation by KRAS mutation in premalignant human bronchial epithelial cells. American Journal of Translational Research. 12: 409-427. PMID 32194893  0.488
2018 Walser TC, Jing Z, Tran LM, Lin YQ, Yakobian N, Wang G, Krysan K, Zhu LX, Sharma S, Lee MH, Belperio JA, Ooi AT, Gomperts BN, Shay JW, Larsen JE, et al. Silencing the Snail-dependent RNA splice regulator ESRP1 drives malignant transformation of human pulmonary epithelial cells. Cancer Research. PMID 29431637 DOI: 10.1158/0008-5472.Can-17-0315  0.31
2016 Zhang B, Tran L, Emilsson V, Zhu J. Characterization of Genetic Networks Associated with Alzheimer's Disease. Methods in Molecular Biology (Clifton, N.J.). 1303: 459-77. PMID 26235085 DOI: 10.1007/978-1-4939-2627-5_28  0.407
2015 Ruscetti M, Dadashian EL, Guo W, Quach B, Mulholland DJ, Park JW, Tran LM, Kobayashi N, Bianchi-Frias D, Xing Y, Nelson PS, Wu H. HDAC inhibition impedes epithelial-mesenchymal plasticity and suppresses metastatic, castration-resistant prostate cancer. Oncogene. PMID 26640144 DOI: 10.1038/Onc.2015.444  0.311
2015 Park SJ, Walser TC, Tran LM, Perdomo C, Wang T, Hong L, Pagano PC, Liclican EL, Larsen JE, Krysan K, Fishbein MC, Minna JD, Lenburg ME, Avrum S, Dubinett S. Abstract B22: The role of e-cigarette exposure on pulmonary epithelial cell transformation Cancer Prevention Research. 8. DOI: 10.1158/1940-6215.Prev-14-B22  0.31
2013 Zhang B, Gaiteri C, Bodea LG, Wang Z, McElwee J, Podtelezhnikov AA, Zhang C, Xie T, Tran L, Dobrin R, Fluder E, Clurman B, Melquist S, Narayanan M, Suver C, et al. Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease. Cell. 153: 707-20. PMID 23622250 DOI: 10.1016/J.Cell.2013.03.030  0.41
2013 Smith KB, Tran LM, Tam BM, Shurell EM, Li Y, Braas D, Tap WD, Christofk HR, Dry SM, Eilber FC, Wu H. Novel dedifferentiated liposarcoma xenograft models reveal PTEN down-regulation as a malignant signature and response to PI3K pathway inhibition. The American Journal of Pathology. 182: 1400-11. PMID 23416162 DOI: 10.1016/J.Ajpath.2013.01.002  0.338
2012 Hill R, Li Y, Tran LM, Dry S, Calvopina JH, Garcia A, Kim C, Wang Y, Donahue TR, Herschman HR, Wu H. Cell intrinsic role of COX-2 in pancreatic cancer development. Molecular Cancer Therapeutics. 11: 2127-37. PMID 22784710 DOI: 10.1158/1535-7163.Mct-12-0342  0.304
2012 Tran LM, Chang CJ, Plaisier S, Wu S, Dang J, Mischel PS, Liao JC, Graeber TG, Wu H. Determining PTEN functional status by network component deduced transcription factor activities. Plos One. 7: e31053. PMID 22347425 DOI: 10.1371/Journal.Pone.0031053  0.561
2012 Hindoyan AA, Tran L, Godavarthi S, Braas D, Christofk H, Donahue T, Wu H. Abstract B87: Determing molecular and cellular mechanisms of gemcitabine response and relapse using human PDAC xenograft models. Cancer Research. 72. DOI: 10.1158/1538-7445.Panca2012-B87  0.316
2012 Zhang B, Dai X, Tran L, Yang X, Friend S, Zhu J. Abstract 4938: A global landscape of transcriptional interactions and regulations in lung cancer Cancer Research. 72: 4938-4938. DOI: 10.1158/1538-7445.Am2012-4938  0.398
2011 Mulholland DJ, Tran LM, Li Y, Cai H, Morim A, Wang S, Plaisier S, Garraway IP, Huang J, Graeber TG, Wu H. Cell autonomous role of PTEN in regulating castration-resistant prostate cancer growth. Cancer Cell. 19: 792-804. PMID 21620777 DOI: 10.1016/J.Ccr.2011.05.006  0.316
2011 Zhang B, Derry J, Schadt E, Friend S, Zhu J, Dai X, Wang Z, Meng F, Tran L, Zhang Z, Guinney J, Clurman B, Wu G. Abstract PR8: From prediction to prognosis and therapeutics: The power of breast cancer transcriptional networks Cancer Research. 71. DOI: 10.1158/1538-7445.Fbcr11-Pr8  0.399
2010 Tran LM, Hyduke DR, Liao JC. Trimming of mammalian transcriptional networks using network component analysis. Bmc Bioinformatics. 11: 511. PMID 20942926 DOI: 10.1186/1471-2105-11-511  0.743
2010 Zhang B, Tran L, Jonathan D, Zhu J, Friend S. Abstract LB-248: Towards a global picture of breast cancer: transcriptional networks, pathways, regulators, and validation Cancer Research. 70. DOI: 10.1158/1538-7445.Am10-Lb-248  0.426
2009 Dean JT, Tran L, Beaven S, Tontonoz P, Reue K, Dipple KM, Liao JC. Resistance to diet-induced obesity in mice with synthetic glyoxylate shunt. Cell Metabolism. 9: 525-36. PMID 19490907 DOI: 10.1016/J.Cmet.2009.04.008  0.696
2009 Wong WW, Tran LM, Liao JC. A hidden square-root boundary between growth rate and biomass yield. Biotechnology and Bioengineering. 102: 73-80. PMID 18683253 DOI: 10.1002/Bit.22046  0.47
2008 Tran LM, Rizk ML, Liao JC. Ensemble modeling of metabolic networks. Biophysical Journal. 95: 5606-17. PMID 18820235 DOI: 10.1529/Biophysj.108.135442  0.725
2008 Jarboe LR, Hyduke DR, Tran LM, Chou KJ, Liao JC. Determination of the Escherichia coli S-nitrosoglutathione response network using integrated biochemical and systems analysis. The Journal of Biological Chemistry. 283: 5148-57. PMID 18070885 DOI: 10.1074/Jbc.M706018200  0.744
2008 Rizk ML, Tran LM, Liao JC. Ensemble modeling of metabolic networks and identification of enzyme targets for metabolic engineering Aiche Annual Meeting, Conference Proceedings.  0.658
2007 Hyduke DR, Jarboe LR, Tran LM, Chou KJ, Liao JC. Integrated network analysis identifies nitric oxide response networks and dihydroxyacid dehydratase as a crucial target in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 104: 8484-9. PMID 17494765 DOI: 10.1073/Pnas.0610888104  0.753
2006 Brynildsen MP, Tran LM, Liao JC. A Gibbs sampler for the identification of gene expression and network connectivity consistency. Bioinformatics (Oxford, England). 22: 3040-6. PMID 17060361 DOI: 10.1093/Bioinformatics/Btl541  0.703
2006 Brynildsen MP, Tran LM, Liao JC. Versatility and connectivity efficiency of bipartite transcription networks. Biophysical Journal. 91: 2749-59. PMID 16815895 DOI: 10.1529/Biophysj.106.082560  0.726
2006 Galbraith SJ, Tran LM, Liao JC. Transcriptome network component analysis with limited microarray data. Bioinformatics (Oxford, England). 22: 1886-94. PMID 16766556 DOI: 10.1093/Bioinformatics/Btl279  0.589
2005 Kao KC, Tran LM, Liao JC. A global regulatory role of gluconeogenic genes in Escherichia coli revealed by transcriptome network analysis. The Journal of Biological Chemistry. 280: 36079-87. PMID 16141204 DOI: 10.1074/Jbc.M508202200  0.69
2005 Tran LM, Brynildsen MP, Kao KC, Suen JK, Liao JC. gNCA: a framework for determining transcription factor activity based on transcriptome: identifiability and numerical implementation. Metabolic Engineering. 7: 128-41. PMID 15781421 DOI: 10.1016/J.Ymben.2004.12.001  0.764
2005 Jarboe LR, Hyduke D, Tran LM, Liao JC. Chemogenomic analysis of signaling pathways for reactive nitrogen oxide species in escherichia coli Aiche Annual Meeting, Conference Proceedings. 10384.  0.715
2003 Liao JC, Boscolo R, Yang YL, Tran LM, Sabatti C, Roychowdhury VP. Network component analysis: reconstruction of regulatory signals in biological systems. Proceedings of the National Academy of Sciences of the United States of America. 100: 15522-7. PMID 14673099 DOI: 10.1073/Pnas.2136632100  0.588
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