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Steven R. Eichten, Ph.D. - Publications

Affiliations: 
2013 Plant Biological Sciences University of Minnesota, Twin Cities, Minneapolis, MN 
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Eichten SR, Srivastava A, Reddiex AJ, Ganguly DR, Heussler A, Streich JC, Wilson PB, Borevitz JO. Extending the Genotype in by Including DNA Methylation Reveals a Joint Contribution with Genetics on Adaptive Traits. G3 (Bethesda, Md.). PMID 32132166 DOI: 10.1534/G3.120.401189  0.511
2019 Ganguly DR, Stone BAB, Bowerman AF, Eichten SR, Pogson BJ. Excess Light Priming in Genotypes with Altered DNA Methylomes. G3 (Bethesda, Md.). PMID 31484672 DOI: 10.1534/G3.119.400659  0.489
2019 Srivastava A, Karpievitch YV, Eichten SR, Borevitz JO, Lister R. HOME: a histogram based machine learning approach for effective identification of differentially methylated regions. Bmc Bioinformatics. 20: 253. PMID 31096906 DOI: 10.1186/S12859-019-2845-Y  0.485
2018 Crisp PA, Smith AB, Ganguly DR, Murray KD, Eichten SR, Millar AA, Pogson BJ. RNA Polymerase II read-through promotes expression of neighboring genes in SAL1-PAP-XRN retrograde signaling. Plant Physiology. PMID 30301775 DOI: 10.1104/Pp.18.00758  0.393
2018 Li L, Eichten SR, Shimizu R, Petsch K, Yeh CT, Wu W, Chettoor AM, Givan SA, Cole RA, Fowler JE, Evans MMS, Scanlon MJ, Yu J, Schnable PS, Timmermans MCP, et al. Correction to: Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biology. 19: 122. PMID 30134966 DOI: 10.1186/S13059-018-1508-Z  0.583
2018 Ganguly DR, Crisp PA, Eichten SR, Pogson BJ. Maintenance of pre-existing DNA methylation states through recurring excess-light stress. Plant, Cell & Environment. PMID 29707792 DOI: 10.1111/Pce.13324  0.394
2017 He Y, Wang M, Dukowic-Schulze S, Zhou A, Tiang CL, Shilo S, Sidhu GK, Eichten S, Bradbury P, Springer NM, Buckler ES, Levy AA, Sun Q, Pillardy J, Kianian PMA, et al. Genomic features shaping the landscape of meiotic double-strand-break hotspots in maize. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087335 DOI: 10.1073/Pnas.1713225114  0.661
2017 Ganguly D, Crisp PA, Eichten SR, Pogson BJ. The Arabidopsis DNA methylome is stable under transgenerational drought stress. Plant Physiology. PMID 28986422 DOI: 10.1104/Pp.17.00744  0.359
2017 Crisp PA, Ganguly D, Smith AB, Murray KD, Estavillo GM, Searle IR, Ford E, Bogdanović O, Lister R, Borevitz JO, Eichten SR, Pogson BJ. Rapid recovery gene downregulation during excess-light stress and recovery in Arabidopsis. The Plant Cell. PMID 28705956 DOI: 10.1105/Tpc.16.00828  0.326
2016 Stuart T, Eichten S, Cahn J, Karpievitch Y, Borevitz J, Lister R. Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation. Elife. 5. PMID 27911260 DOI: 10.7554/Elife.20777  0.531
2016 Greaves IK, Eichten SR, Groszmann M, Wang A, Ying H, Peacock WJ, Dennis ES. Twenty-four-nucleotide siRNAs produce heritable trans-chromosomal methylation in F1 Arabidopsis hybrids. Proceedings of the National Academy of Sciences of the United States of America. PMID 27791153 DOI: 10.1073/Pnas.1613623113  0.502
2016 Eichten SR, Stuart T, Srivastava A, Lister R, Borevitz JO. DNA methylation profiles of diverse Brachypodium distachyon aligns with underlying genetic diversity. Genome Research. PMID 27613611 DOI: 10.1101/Gr.205468.116  0.606
2016 Crisp PA, Ganguly D, Eichten SR, Borevitz JO, Pogson BJ. Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics. Science Advances. 2: e1501340. PMID 26989783 DOI: 10.1126/Sciadv.1501340  0.325
2016 Stuart T, Eichten SR, Cahn J, Karpievitch YV, Borevitz JO, Lister R. Author response: Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation Elife. DOI: 10.7554/Elife.20777.056  0.348
2015 Eichten SR, Springer NM. Minimal evidence for consistent changes in maize DNA methylation patterns following environmental stress. Frontiers in Plant Science. 6: 308. PMID 25999972 DOI: 10.3389/Fpls.2015.00308  0.689
2015 Li Q, Song J, West PT, Zynda G, Eichten SR, Vaughn MW, Springer NM. Examining the causes and consequences of context-specific differential DNA methylation in maize. Plant Physiology. PMID 25869653 DOI: 10.1104/Pp.15.00052  0.755
2015 Li Q, Suzuki M, Wendt J, Patterson N, Eichten SR, Hermanson PJ, Green D, Jeddeloh J, Richmond T, Rosenbaum H, Burgess D, Springer NM, Greally JM. Post-conversion targeted capture of modified cytosines in mammalian and plant genomes. Nucleic Acids Research. 43: e81. PMID 25813045 DOI: 10.1093/Nar/Gkv244  0.657
2014 Li Q, Eichten SR, Hermanson PJ, Zaunbrecher VM, Song J, Wendt J, Rosenbaum H, Madzima TF, Sloan AE, Huang J, Burgess DL, Richmond TA, McGinnis KM, Meeley RB, Danilevskaya ON, et al. Genetic perturbation of the maize methylome. The Plant Cell. 26: 4602-16. PMID 25527708 DOI: 10.1105/Tpc.114.133140  0.723
2014 West PT, Li Q, Ji L, Eichten SR, Song J, Vaughn MW, Schmitz RJ, Springer NM. Genomic distribution of H3K9me2 and DNA methylation in a maize genome. Plos One. 9: e105267. PMID 25122127 DOI: 10.1371/Journal.Pone.0105267  0.73
2014 Hirsch CN, Flint-Garcia SA, Beissinger TM, Eichten SR, Deshpande S, Barry K, McMullen MD, Holland JB, Buckler ES, Springer N, Buell CR, de Leon N, Kaeppler SM. Insights into the effects of long-term artificial selection on seed size in maize. Genetics. 198: 409-21. PMID 25037958 DOI: 10.1534/Genetics.114.167155  0.613
2014 Stelpflug SC, Eichten SR, Hermanson PJ, Springer NM, Kaeppler SM. Consistent and heritable alterations of DNA methylation are induced by tissue culture in maize. Genetics. 198: 209-18. PMID 25023398 DOI: 10.1534/Genetics.114.165480  0.699
2014 Eichten SR, Schmitz RJ, Springer NM. Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation. Plant Physiology. 165: 933-947. PMID 24872382 DOI: 10.1104/Pp.113.234211  0.659
2014 Li L, Eichten SR, Shimizu R, Petsch K, Yeh CT, Wu W, Chettoor AM, Givan SA, Cole RA, Fowler JE, Evans MM, Scanlon MJ, Yu J, Schnable PS, Timmermans MC, et al. Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biology. 15: R40. PMID 24576388 DOI: 10.1186/Gb-2014-15-2-R40  0.586
2014 Li Q, Eichten SR, Hermanson PJ, Springer NM. Inheritance patterns and stability of DNA methylation variation in maize near-isogenic lines. Genetics. 196: 667-76. PMID 24361940 DOI: 10.1534/Genetics.113.158980  0.708
2013 Waters AJ, Bilinski P, Eichten SR, Vaughn MW, Ross-Ibarra J, Gehring M, Springer NM. Comprehensive analysis of imprinted genes in maize reveals allelic variation for imprinting and limited conservation with other species. Proceedings of the National Academy of Sciences of the United States of America. 110: 19639-44. PMID 24218619 DOI: 10.1073/Pnas.1309182110  0.65
2013 Eichten SR, Briskine R, Song J, Li Q, Swanson-Wagner R, Hermanson PJ, Waters AJ, Starr E, West PT, Tiffin P, Myers CL, Vaughn MW, Springer NM. Epigenetic and genetic influences on DNA methylation variation in maize populations. The Plant Cell. 25: 2783-97. PMID 23922207 DOI: 10.1105/Tpc.113.114793  0.729
2013 Muñoz-Amatriaín M, Eichten SR, Wicker T, Richmond TA, Mascher M, Steuernagel B, Scholz U, Ariyadasa R, Spannagl M, Nussbaumer T, Mayer KF, Taudien S, Platzer M, Jeddeloh JA, Springer NM, et al. Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome. Genome Biology. 14: R58. PMID 23758725 DOI: 10.1186/Gb-2013-14-6-R58  0.621
2013 Eichten S, Borevitz J. Epigenomics: Methylation's mark on inheritance Nature. 495: 181-183. PMID 23467093 DOI: 10.1038/Nature11960  0.621
2013 Makarevitch I, Eichten SR, Briskine R, Waters AJ, Danilevskaya ON, Meeley RB, Myers CL, Vaughn MW, Springer NM. Genomic distribution of maize facultative heterochromatin marked by trimethylation of H3K27. The Plant Cell. 25: 780-93. PMID 23463775 DOI: 10.1105/Tpc.112.106427  0.682
2013 Eichten SR, Vaughn MW, Hermanson PJ, Springer NM. Variation in DNA methylation patterns is more common among maize inbreds than among tissues Plant Genome. 6. DOI: 10.3835/Plantgenome2012.06.0009  0.715
2012 Eichten SR, Ellis NA, Makarevitch I, Yeh CT, Gent JI, Guo L, McGinnis KM, Zhang X, Schnable PS, Vaughn MW, Dawe RK, Springer NM. Spreading of heterochromatin is limited to specific families of maize retrotransposons. Plos Genetics. 8: e1003127. PMID 23271981 DOI: 10.1371/Journal.Pgen.1003127  0.675
2011 Waters AJ, Makarevitch I, Eichten SR, Swanson-Wagner RA, Yeh CT, Xu W, Schnable PS, Vaughn MW, Gehring M, Springer NM. Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm. The Plant Cell. 23: 4221-33. PMID 22198147 DOI: 10.1105/Tpc.111.092668  0.686
2011 Eichten SR, Swanson-Wagner RA, Schnable JC, Waters AJ, Hermanson PJ, Liu S, Yeh CT, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM. Heritable epigenetic variation among maize inbreds. Plos Genetics. 7: e1002372. PMID 22125494 DOI: 10.1371/Journal.Pgen.1002372  0.709
2011 Eichten SR, Foerster JM, de Leon N, Kai Y, Yeh CT, Liu S, Jeddeloh JA, Schnable PS, Kaeppler SM, Springer NM. B73-Mo17 near-isogenic lines demonstrate dispersed structural variation in maize. Plant Physiology. 156: 1679-90. PMID 21705654 DOI: 10.1104/Pp.111.174748  0.619
2010 Swanson-Wagner RA, Eichten SR, Kumari S, Tiffin P, Stein JC, Ware D, Springer NM. Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Research. 20: 1689-99. PMID 21036921 DOI: 10.1101/Gr.109165.110  0.671
2009 Springer NM, Eichten S, Smith A, Papa CM, Steinway S, Kaeppler SM. Characterization of a novel maize retrotransposon family sprite that shows high levels of variability among maize inbred lines Maydica. 54: 417-428.  0.48
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