Francisco José Ayala - Publications

Affiliations: 
University of California, Irvine, Irvine, CA 
Area:
molecular clock evolution, evolution of introns
Website:
http://www.faculty.uci.edu/profile.cfm?faculty_id=2134

258 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Tibayrenc M, Ayala FJ. Genomics and High-Resolution Typing Confirm Predominant Clonal Evolution Down to a Microevolutionary Scale in . Pathogens (Basel, Switzerland). 9. PMID 32397142 DOI: 10.3390/pathogens9050356  0.327
2019 Rodríguez-Trelles F, Weinberg JR, Ayala FJ. PRESUMPTIVE RAPID SPECIATION AFTER A FOUNDER EVENT IN A LABORATORY POPULATION OF NEREIS: ALLOZYME ELECTROPHORETIC EVIDENCE DOES NOT SUPPORT THE HYPOTHESIS. Evolution; International Journal of Organic Evolution. 50: 457-461. PMID 28568872 DOI: 10.1111/j.1558-5646.1996.tb04509.x  0.745
2018 Giribets MP, Guerreiro MPG, Santos M, Ayala FJ, Tarrío R, Rodríguez-Trelles F. Chromosomal inversions promote genomic islands of concerted evolution of Hsp70 genes in the Drosophila subobscura species subgroup. Molecular Ecology. PMID 29412486 DOI: 10.1111/Mec.14511  0.784
2017 Whiten A, Ayala FJ, Feldman MW, Laland KN. The extension of biology through culture. Proceedings of the National Academy of Sciences of the United States of America. PMID 28739924 DOI: 10.1073/Pnas.1707630114  0.366
2017 Tibayrenc M, Ayala FJ. Relevant units of analysis for applied and basic research dealing with neglected transmissible diseases: The predominant clonal evolution model of pathogenic microorganisms. Plos Neglected Tropical Diseases. 11: e0005293. PMID 28448491 DOI: 10.1371/journal.pntd.0005293  0.373
2016 Tibayrenc M, Ayala FJ. Is Predominant Clonal Evolution a Common Evolutionary Adaptation to Parasitism in Pathogenic Parasitic Protozoa, Fungi, Bacteria, and Viruses? Advances in Parasitology. 97: 243-325. PMID 28325372 DOI: 10.1016/bs.apar.2016.08.007  0.371
2016 Avise JC, Bowen BW, Ayala FJ. In the light of evolution X: Comparative phylogeography. Proceedings of the National Academy of Sciences of the United States of America. PMID 27432955 DOI: 10.1073/pnas.1604338113  0.665
2016 Balakirev ES, Anisimova M, Pavlyuchkov VA, Ayala FJ. DNA polymorphism and selection at the bindin locus in three Strongylocentrotus sp. (Echinoidea). Bmc Genetics. 17: 66. PMID 27176219 DOI: 10.1186/s12863-016-0374-5  0.371
2015 Tibayrenc M, Ayala FJ. How clonal are Neisseria species? The epidemic clonality model revisited. Proceedings of the National Academy of Sciences of the United States of America. 112: 8909-13. PMID 26195766 DOI: 10.1073/pnas.1502900112  0.3
2015 Tibayrenc M, Avise JC, Ayala FJ. In the light of evolution IX: Clonal reproduction: Alternatives to sex. Proceedings of the National Academy of Sciences of the United States of America. 112: 8824-6. PMID 26195755 DOI: 10.1073/pnas.1508087112  0.537
2015 Ayala FJ. Cloning humans? Biological, ethical, and social considerations. Proceedings of the National Academy of Sciences of the United States of America. 112: 8879-86. PMID 26195738 DOI: 10.1073/pnas.1501798112  0.319
2015 Tibayrenc M, Ayala FJ. The population genetics of Trypanosoma cruzi revisited in the light of the predominant clonal evolution model. Acta Tropica. 151: 156-65. PMID 26188332 DOI: 10.1016/j.actatropica.2015.05.006  0.41
2015 Tibayrenc M, Ayala FJ. Response to Rougeron et al.: Leishmania population genetics: clonality, selfing and aneuploidy. Trends in Parasitology. 31: 279-80. PMID 26142921 DOI: 10.1016/j.pt.2015.04.002  0.32
2015 Elguero E, Délicat-Loembet LM, Rougeron V, Arnathau C, Roche B, Becquart P, Gonzalez JP, Nkoghe D, Sica L, Leroy EM, Durand P, Ayala FJ, Ollomo B, Renaud F, Prugnolle F. Malaria continues to select for sickle cell trait in Central Africa. Proceedings of the National Academy of Sciences of the United States of America. 112: 7051-4. PMID 25941403 DOI: 10.1073/pnas.1505665112  0.308
2014 Skyrms B, Avise JC, Ayala FJ. In the light of evolution VIII: Darwinian thinking in the social sciences. Introduction. Proceedings of the National Academy of Sciences of the United States of America. 111: 10781-4. PMID 25202765 DOI: 10.1073/Pnas.1411483111  0.5
2014 Arnaud-Haond S, Moalic Y, Barnabé C, Ayala FJ, Tibayrenc M. Discriminating micropathogen lineages and their reticulate evolution through graph theory-based network analysis: the case of Trypanosoma cruzi, the agent of Chagas disease. Plos One. 9: e103213. PMID 25148574 DOI: 10.1371/Journal.Pone.0103213  0.328
2014 Tomasini N, Lauthier JJ, Ayala FJ, Tibayrenc M, Diosque P. How often do they have sex? A comparative analysis of the population structure of seven eukaryotic microbial pathogens. Plos One. 9: e103131. PMID 25054834 DOI: 10.1371/journal.pone.0103131  0.362
2014 Balakirev ES, Romanov NS, Ayala FJ. Complete mitochondrial genome of Sakhalin taimen Parahucho perryi (Salmoniformes, Salmonidae) without two frame-disrupting indels in the ND4 gene. Mitochondrial Dna. 1-2. PMID 24938084 DOI: 10.3109/19401736.2014.926534  0.302
2014 Balakirev ES, Romanov NS, Ayala FJ. Complete mitochondrial genomes of the Northern (Salvelinus malma) and Southern (Salvelinus curilus) Dolly Varden chars (Salmoniformes, Salmonidae). Mitochondrial Dna. 1-2. PMID 24919504 DOI: 10.3109/19401736.2014.926531  0.311
2014 Balakirev ES, Romanov NS, Ayala FJ. Complete mitochondrial genome of blunt-snouted lenok Brachymystax tumensis (Salmoniformes, Salmonidae). Mitochondrial Dna. 1-2. PMID 24865917 DOI: 10.3109/19401736.2014.919487  0.317
2014 Yalcindag E, Rougeron V, Elguero E, Arnathau C, Durand P, Brisse S, Diancourt L, Aubouy A, Becquart P, D'Alessandro U, Fontenille D, Gamboa D, Maestre A, Ménard D, Musset L, ... ... Ayala FJ, et al. Patterns of selection on Plasmodium falciparum erythrocyte-binding antigens after the colonization of the New World. Molecular Ecology. 23: 1979-93. PMID 24834503 DOI: 10.1111/Mec.12696  0.381
2014 Tibayrenc M, Ayala FJ. Cryptosporidium,Giardia, Cryptococcus, Pneumocystis genetic variability: cryptic biological species or clonal near-clades? Plos Pathogens. 10: e1003908. PMID 24722548 DOI: 10.1371/journal.ppat.1003908  0.396
2014 Tibayrenc M, Ayala FJ. New insights into clonality and panmixia in Plasmodium and toxoplasma. Advances in Parasitology. 84: 253-68. PMID 24480316 DOI: 10.1016/B978-0-12-800099-1.00005-3  0.31
2013 Balakirev ES, Romanov NS, Mikheev PB, Ayala FJ. Mitochondrial DNA variation and introgression in Siberian taimen Hucho taimen. Plos One. 8: e71147. PMID 23951096 DOI: 10.1371/journal.pone.0071147  0.367
2013 Cela-Conde CJ, Gutiérrez Lombardo R, Avise JC, Ayala FJ. In the light of evolution VII: The human mental machinery. Proceedings of the National Academy of Sciences of the United States of America. 110: 10339-42. PMID 23754413 DOI: 10.1073/pnas.1307207110  0.476
2013 Telleria J, Barnabé C, Ayala FJ, Tibayrenc M. Phylogenetic character mapping of RADES Probing, a new marker for exploring the clonal evolution of expressed coding sequences in Trypanosoma cruzi, the agent of Chagas disease. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 19: 287-91. PMID 23541409 DOI: 10.1016/j.meegid.2013.03.027  0.34
2012 Tibayrenc M, Ayala FJ. Reproductive clonality of pathogens: a perspective on pathogenic viruses, bacteria, fungi, and parasitic protozoa. Proceedings of the National Academy of Sciences of the United States of America. 109: E3305-13. PMID 22949662 DOI: 10.1073/pnas.1212452109  0.386
2012 Balakirev ES, Krupnova TN, Ayala FJ. DNA variation in the phenotypically-diverse brown alga Saccharina japonica. Bmc Plant Biology. 12: 108. PMID 22784095 DOI: 10.1186/1471-2229-12-108  0.317
2012 Balakirev ES, Krupnova TN, Ayala FJ. Symbiotic associations in the phenotypically-diverse brown alga Saccharina japonica. Plos One. 7: e39587. PMID 22745792 DOI: 10.1371/journal.pone.0039587  0.379
2012 Striedter GF, Avise JC, Ayala FJ. In the light of evolution VI: brain and behavior. Proceedings of the National Academy of Sciences of the United States of America. 109: 10607-11. PMID 22723364 DOI: 10.1073/pnas.1206166109  0.483
2012 Yalcindag E, Elguero E, Arnathau C, Durand P, Akiana J, Anderson TJ, Aubouy A, Balloux F, Besnard P, Bogreau H, Carnevale P, D'Alessandro U, Fontenille D, Gamboa D, Jombart T, ... ... Ayala FJ, et al. Multiple independent introductions of Plasmodium falciparum in South America. Proceedings of the National Academy of Sciences of the United States of America. 109: 511-6. PMID 22203975 DOI: 10.1073/Pnas.1119058109  0.342
2011 Tarrío R, Ayala FJ, Rodríguez-Trelles F. The Vein Patterning 1 (VEP1) gene family laterally spread through an ecological network. Plos One. 6: e22279. PMID 21818306 DOI: 10.1371/journal.pone.0022279  0.777
2011 Balakirev ES, Anisimova M, Ayala FJ. Complex interplay of evolutionary forces in the ladybird homeobox genes of Drosophila melanogaster. Plos One. 6: e22613. PMID 21799919 DOI: 10.1371/journal.pone.0022613  0.392
2011 Strassmann JE, Queller DC, Avise JC, Ayala FJ. In the light of evolution V: cooperation and conflict. Proceedings of the National Academy of Sciences of the United States of America. 108: 10787-91. PMID 21690379 DOI: 10.1073/pnas.1100289108  0.386
2011 Wang Y, Kaneko O, Sattabongkot J, Chen JH, Lu F, Chai JY, Takeo S, Tsuboi T, Ayala FJ, Chen Y, Lim CS, Han ET. Genetic polymorphism of Plasmodium vivax msp1p, a paralog of merozoite surface protein 1, from worldwide isolates. The American Journal of Tropical Medicine and Hygiene. 84: 292-7. PMID 21292901 DOI: 10.4269/ajtmh.2011.10-0432  0.325
2011 Prugnolle F, Ayala F, Ollomo B, Arnathau C, Durand P, Renaud F. Plasmodium falciparum is not as lonely as previously considered. Virulence. 2: 71-6. PMID 21224722 DOI: 10.4161/viru.2.1.14608  0.3
2010 Avise JC, Ayala FJ. Preface to the In the Light of Evolution Series Proceedings of the National Academy of Sciences of the United States of America. 4. PMID 24983034 DOI: 10.17226/12931  0.519
2010 Telleria J, Biron DG, Brizard JP, Demettre E, Séveno M, Barnabé C, Ayala FJ, Tibayrenc M. Phylogenetic character mapping of proteomic diversity shows high correlation with subspecific phylogenetic diversity in Trypanosoma cruzi. Proceedings of the National Academy of Sciences of the United States of America. 107: 20411-6. PMID 21059959 DOI: 10.1073/pnas.1015496107  0.313
2010 Lun ZR, Lai DH, Li FJ, Lukes J, Ayala FJ. Trypanosoma brucei: two steps to spread out from Africa. Trends in Parasitology. 26: 424-7. PMID 20561822 DOI: 10.1016/J.Pt.2010.05.007  0.312
2010 Avise JC, Ayala FJ. Colloquium paper: in the light of evolution IV: the human condition. Proceedings of the National Academy of Sciences of the United States of America. 107: 8897-901. PMID 20460311 DOI: 10.1073/pnas.1003214107  0.533
2010 Gleick PH, Adams RM, Amasino RM, Anders E, Anderson DJ, Anderson WW, Anselin LE, Arroyo MK, Asfaw B, Ayala FJ, Bax A, Bebbington AJ, Bell G, Bennett MV, Bennetzen JL, et al. Climate change and the integrity of science. Science (New York, N.Y.). 328: 689-90. PMID 20448167 DOI: 10.1126/Science.328.5979.689  0.42
2010 Prugnolle F, Durand P, Neel C, Ollomo B, Ayala FJ, Arnathau C, Etienne L, Mpoudi-Ngole E, Nkoghe D, Leroy E, Delaporte E, Peeters M, Renaud F. African great apes are natural hosts of multiple related malaria species, including Plasmodium falciparum. Proceedings of the National Academy of Sciences of the United States of America. 107: 1458-63. PMID 20133889 DOI: 10.1073/Pnas.0914440107  0.318
2010 Ayala FJ. Darwin's explanation of design: from natural theology to natural selection. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 10: 840-3. PMID 19800418 DOI: 10.1016/j.meegid.2009.09.014  0.328
2010 Ayala FJ. Response: gene lineages and human evolution. Science (New York, N.Y.). 272: 1363b-4b. PMID 17832189 DOI: 10.1126/SCIENCE.272.5266.1363B  0.307
2010 Serradilla JM, Ayala FJ. Alloprocoptic selection: A mode of natural selection promoting polymorphism. Proceedings of the National Academy of Sciences of the United States of America. 80: 2022-5. PMID 16593303 DOI: 10.1073/PNAS.80.7.2022  0.309
2009 Rich SM, Leendertz FH, Xu G, LeBreton M, Djoko CF, Aminake MN, Takang EE, Diffo JL, Pike BL, Rosenthal BM, Formenty P, Boesch C, Ayala FJ, Wolfe ND. The origin of malignant malaria. Proceedings of the National Academy of Sciences of the United States of America. 106: 14902-7. PMID 19666593 DOI: 10.1073/Pnas.0907740106  0.328
2009 Ayala FJ. Darwin and the scientific method. Proceedings of the National Academy of Sciences of the United States of America. 106: 10033-9. PMID 19528662 DOI: 10.1073/pnas.0901404106  0.327
2009 Avise JC, Ayala FJ. In the light of evolution III: two centuries of Darwin. Proceedings of the National Academy of Sciences of the United States of America. 106: 9933-8. PMID 19528649 DOI: 10.1073/pnas.0903381106  0.52
2009 Rougeron V, De Meeûs T, Hide M, Waleckx E, Bermudez H, Arevalo J, Llanos-Cuentas A, Dujardin JC, De Doncker S, Le Ray D, Ayala FJ, Bañuls AL. Extreme inbreeding in Leishmania braziliensis. Proceedings of the National Academy of Sciences of the United States of America. 106: 10224-9. PMID 19497885 DOI: 10.1073/Pnas.0904420106  0.388
2009 Ayala FJ. One hundred fifty years without Darwin are enough! Genome Research. 19: 693-9. PMID 19411593 DOI: 10.1101/gr.084285.108  0.307
2009 Ayala FJ, Avise JC. Darwin at 200. Proceedings of the National Academy of Sciences of the United States of America. 106: 2475-6. PMID 19211793 DOI: 10.1073/pnas.0900798106  0.531
2009 Koffi M, De Meeûs T, Bucheton B, Solano P, Camara M, Kaba D, Cuny G, Ayala FJ, Jamonneau V. Population genetics of Trypanosoma brucei gambiense, the agent of sleeping sickness in Western Africa. Proceedings of the National Academy of Sciences of the United States of America. 106: 209-14. PMID 19106297 DOI: 10.1073/Pnas.0811080106  0.304
2009 Pascual M, Ayala FJ, Prevosti A, Serra L. Colonization of North America by Drosophila subobscura: Ecological analysis of three communities of drosophilids in California Journal of Zoological Systematics and Evolutionary Research. 31: 216-226. DOI: 10.1111/j.1439-0469.1993.tb00190.x  0.701
2009 Moya A, Latorre A, Ayala FJ. Male-female interactions in Drosophila melanogaster: model with one-locus and three-alleles Journal of Zoological Systematics and Evolutionary Research. 27: 317-325. DOI: 10.1111/J.1439-0469.1989.Tb00354.X  0.721
2009 Serradilla JM, Ayala FJ. Ecological and evolutionary divergence in five species of Drosophila Journal of Zoological Systematics and Evolutionary Research. 21: 194-200. DOI: 10.1111/J.1439-0469.1983.TB00287.X  0.342
2009 Ayala FJ. Evolution by Natural Selection: Darwin's Gift to Science and Religion Theology and Science. 7: 323-335. DOI: 10.1080/14746700903239478  0.314
2008 Balakirev ES, Pavlyuchkov VA, Ayala FJ. DNA variation and symbiotic associations in phenotypically diverse sea urchin Strongylocentrotus intermedius. Proceedings of the National Academy of Sciences of the United States of America. 105: 16218-23. PMID 18852450 DOI: 10.1073/pnas.0807860105  0.382
2008 Avise JC, Hubbell SP, Ayala FJ. In the Light of Evolution II: Biodiversity and Extinction. Proceedings of the Arthur M. Sackler Colloquium of the National Academy of Sciences. December 6-8, 2007. Irvine, California, USA. Proceedings of the National Academy of Sciences of the United States of America. 11453-586. PMID 18773506 DOI: 10.1073/pnas.0802504105  0.394
2008 Avise JC, Hubbell SP, Ayala FJ. Colloquium paper: in the light of evolution II: biodiversity and extinction. Proceedings of the National Academy of Sciences of the United States of America. 105: 11453-7. PMID 18695213 DOI: 10.1073/Pnas.0802504105  0.524
2008 Tarrío R, Ayala FJ, Rodríguez-Trelles F. Alternative splicing: a missing piece in the puzzle of intron gain. Proceedings of the National Academy of Sciences of the United States of America. 105: 7223-8. PMID 18463286 DOI: 10.1073/pnas.0802941105  0.785
2008 Alcaraz LD, Olmedo G, Bonilla G, Cerritos R, Hernández G, Cruz A, Ramírez E, Putonti C, Jiménez B, Martínez E, López V, Arvizu JL, Ayala F, Razo F, Caballero J, et al. The genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment. Proceedings of the National Academy of Sciences of the United States of America. 105: 5803-8. PMID 18408155 DOI: 10.1073/Pnas.0800981105  0.32
2008 Badaraco JL, Ayala FJ, Bart JM, Gottstein B, Haag KL. Using mitochondrial and nuclear markers to evaluate the degree of genetic cohesion among Echinococcus populations Experimental Parasitology. 119: 453-459. PMID 18367173 DOI: 10.1016/j.exppara.2008.02.004  0.343
2008 Haag KL, Gottstein B, Ayala FJ. Taeniid history, natural selection and antigenic diversity: evolutionary theory meets helminthology. Trends in Parasitology. 24: 96-102. PMID 18182327 DOI: 10.1016/j.pt.2007.11.004  0.306
2007 Tatarenkov A, Ayala FJ. Nucleotide variation at the dopa decarboxylase (Ddc) gene in natural populations of Drosophila melanogaster. Journal of Genetics. 86: 125-37. PMID 17968140 DOI: 10.1007/S12041-007-0017-8  0.685
2007 Lukes J, Mauricio IL, Schönian G, Dujardin JC, Soteriadou K, Dedet JP, Kuhls K, Tintaya KW, Jirků M, Chocholová E, Haralambous C, Pratlong F, Oborník M, Horák A, Ayala FJ, et al. Evolutionary and geographical history of the Leishmania donovani complex with a revision of current taxonomy. Proceedings of the National Academy of Sciences of the United States of America. 104: 9375-80. PMID 17517634 DOI: 10.1073/pnas.0703678104  0.364
2007 Ayala FJ. Darwin's greatest discovery: design without designer. Proceedings of the National Academy of Sciences of the United States of America. 104: 8567-73. PMID 17494753 DOI: 10.1073/pnas.0701072104  0.314
2007 Avise JC, Ayala FJ. From the Academy: Colloquium Perspective: In the light of evolution I: Adaptation and complex design. Proceedings of the National Academy of Sciences of the United States of America. 104: 8563-6. PMID 17494742 DOI: 10.1073/pnas.0702066104  0.507
2007 Annan Z, Durand P, Ayala FJ, Arnathau C, Awono-Ambene P, Simard F, Razakandrainibe FG, Koella JC, Fontenille D, Renaud F. Population genetic structure of Plasmodium falciparum in the two main African vectors, Anopheles gambiae and Anopheles funestus. Proceedings of the National Academy of Sciences of the United States of America. 104: 7987-92. PMID 17470800 DOI: 10.1073/pnas.0702715104  0.359
2007 Ayala FJ. John C. Avise--recipient of 2006 Molecular Ecology prize. Molecular Ecology. 16: 15-6. PMID 17181716 DOI: 10.1111/j.1365-294X.2006.3253_3.x  0.377
2006 Rodríguez-Trelles F, Tarrío R, Ayala FJ. Origins and evolution of spliceosomal introns. Annual Review of Genetics. 40: 47-76. PMID 17094737 DOI: 10.1146/annurev.genet.40.110405.090625  0.783
2006 Haag KL, Gottstein B, Müller N, Schnorr A, Ayala FJ. Redundancy and recombination in the Echinococcus AgB multigene family: Is there any similarity with protozoan contingency genes? Parasitology. 133: 411-419. PMID 16817991 DOI: 10.1017/S0031182006000564  0.344
2006 Nébavi F, Ayala FJ, Renaud F, Bertout S, Eholié S, Moussa K, Mallié M, de Meeûs T. Clonal population structure and genetic diversity of Candida albicans in AIDS patients from Abidjan (Côte d'Ivoire). Proceedings of the National Academy of Sciences of the United States of America. 103: 3663-8. PMID 16501044 DOI: 10.1073/pnas.0511328103  0.31
2006 Rodríguez-Trelles F, Tarrío R, Ayala FJ. Models of spliceosomal intron proliferation in the face of widespread ectopic expression. Gene. 366: 201-8. PMID 16288838 DOI: 10.1016/j.gene.2005.09.004  0.78
2006 Haag KL, Zanotto PMA, Alves-Junior L, Gasser RB, Zaha A, Ayala FJ. Searching for antigen B genes and their adaptive sites in distinct strains and species of the helminth Echinococcus Infection, Genetics and Evolution. 6: 251-261. PMID 16207536 DOI: 10.1016/j.meegid.2005.07.003  0.376
2006 Nébavi F, Ayala FJ, Renaud F, Bertout S, Eholié S, Moussa K, Mallié M, Meeûs Td. Correction for Nébavi et al., Clonal population structure and genetic diversity of Candida albicans in AIDS patients from Abidjan (Côte d’Ivoire) Proceedings of the National Academy of Sciences of the United States of America. 103: 5632-5632. DOI: 10.1073/Pnas.0601704103  0.306
2005 Lim CS, Tazi L, Ayala FJ. Plasmodium vivax: recent world expansion and genetic identity to Plasmodium simium. Proceedings of the National Academy of Sciences of the United States of America. 102: 15523-8. PMID 16227436 DOI: 10.1073/pnas.0507413102  0.336
2005 Barahona A, Ayala FJ. The emergence and development of genetics in Mexico Nature Reviews Genetics. 6: 860-866. PMID 16175170 DOI: 10.1038/nrg1705  0.343
2005 Balakirev ES, Chechetkin VR, Lobzin VV, Ayala FJ. Entropy and GC Content in the beta-esterase gene cluster of the Drosophila melanogaster subgroup. Molecular Biology and Evolution. 22: 2063-72. PMID 15972847 DOI: 10.1093/molbev/msi197  0.353
2005 Rodríguez-Trelles F, Tarrío R, Ayala FJ. Is ectopic expression caused by deregulatory mutations or due to gene-regulation leaks with evolutionary potential? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 27: 592-601. PMID 15892118 DOI: 10.1002/BIES.20241  0.773
2005 Ayala FJ, Coluzzi M. Chromosome speciation: humans, Drosophila, and mosquitoes. Proceedings of the National Academy of Sciences of the United States of America. 6535-42. PMID 15851677 DOI: 10.1073/PNAS.0501847102  0.359
2005 Hey J, Fitch WM, Ayala FJ. Systematics and the origin of species: an introduction. Proceedings of the National Academy of Sciences of the United States of America. 102: 6515-9. PMID 15851660 DOI: 10.1073/Pnas.0501939102  0.558
2005 Ayala FJ. The Structure of Evolutionary Theory : on Stephen Jay Gould's Monumental Masterpiece Theology and Science. 3: 97-117. DOI: 10.1080/14746700500039800  0.313
2004 Arend AC, Zaha A, Ayala FJ, Haag KL. The Echinococcus granulosus antigen B shows a high degree of genetic variability Experimental Parasitology. 108: 76-80. PMID 15491553 DOI: 10.1016/j.exppara.2004.07.009  0.332
2004 Balakirev ES, Ayala FJ. The beta-esterase gene cluster of drosophila melanogaster: is psiEst-6 a pseudogene, a functional gene, or both? Genetica. 121: 165-79. PMID 15330116 DOI: 10.1023/B:GENE.0000040391.27307.51  0.361
2004 Haag KL, Alves-Junior L, Zaha A, Ayala FJ. Contingent, non-neutral evolution in a multicellular parasite: natural selection and gene conversion in the Echinococcus granulosus antigen B gene family. Gene. 333: 157-67. PMID 15177691 DOI: 10.1016/J.GENE.2004.02.027  0.367
2004 Balakirev ES, Ayala FJ. Nucleotide variation in the tinman and bagpipe homeobox genes of Drosophila melanogaster. Genetics. 166: 1845-56. PMID 15126403 DOI: 10.1534/GENETICS.166.4.1845  0.377
2004 Sáenz-de-Miera LE, Ayala FJ. Complex evolution of orthologous and paralogous decarboxylase genes. Journal of Evolutionary Biology. 17: 55-66. PMID 15000648 DOI: 10.1046/J.1420-9101.2003.00652.X  0.354
2004 Rodríguez-Trelles F, Tarrío R, Ayala FJ. Evolution of cis-regulatory regions versus codifying regions. The International Journal of Developmental Biology. 47: 665-73. PMID 14756342  0.786
2004 Rich SM, Ayala FJ. Progress in malaria research: the case for phylogenetics. Advances in Parasitology. 54: 255-80. PMID 14711087 DOI: 10.1016/S0065-308X(03)54005-2  0.301
2003 Balakirev ES, Ayala FJ. Molecular population genetics of the beta-esterase gene cluster of Drosophila melanogaster. Journal of Genetics. 82: 115-31. PMID 15133190 DOI: 10.1007/BF02715813  0.333
2003 Balakirev ES, Ayala FJ. Pseudogenes: are they "junk" or functional DNA? Annual Review of Genetics. 37: 123-51. PMID 14616058 DOI: 10.1146/annurev.genet.37.040103.103949  0.377
2003 Rodríguez-Trelles F, Tarrío R, Ayala FJ. Convergent neofunctionalization by positive Darwinian selection after ancient recurrent duplications of the xanthine dehydrogenase gene. Proceedings of the National Academy of Sciences of the United States of America. 100: 13413-7. PMID 14576276 DOI: 10.1073/pnas.1835646100  0.792
2003 Cela-Conde CJ, Ayala FJ. Genera of the human lineage. Proceedings of the National Academy of Sciences of the United States of America. 100: 7684-9. PMID 12794185 DOI: 10.1073/pnas.0832372100  0.304
2003 Tarrio R, Rodríguez-Trelles F, Ayala FJ. A new Drosophila spliceosomal intron position is common in plants. Proceedings of the National Academy of Sciences of the United States of America. 100: 6580-3. PMID 12750476 DOI: 10.1073/pnas.0731952100  0.786
2003 Sáez AG, Tatarenkov A, Barrio E, Becerra NH, Ayala FJ. Patterns of DNA sequence polymorphism at Sod vicinities in Drosophila melanogaster: unraveling the footprint of a recent selective sweep. Proceedings of the National Academy of Sciences of the United States of America. 100: 1793-8. PMID 12578968 DOI: 10.1073/Pnas.242746799  0.79
2003 Rodriguez-Trelles F, Tarrio R, Ayala FJ. Evolution of cis-regulatory regions versus codifying regions. The International Journal of Developmental Biology. 47: 665-673. DOI: 10.1387/Ijdb.14756342  0.35
2002 Arhontaki K, Eliopoulos E, Goulielmos G, Kastanis P, Tsakas S, Loukas M, Ayala F. Functional constraints of the Cu,Zn superoxide dismutase in species of the Drosophila melanogaster subgroup and phylogenetic analysis. Journal of Molecular Evolution. 55: 745-756. PMID 12486533 DOI: 10.1007/S00239-002-2370-9  0.304
2002 Ayala FJ, Balakirev ES, Sáez AG. Genetic polymorphism at two linked loci, Sod and Est-6, in Drosophila melanogaster. Gene. 300: 19-29. PMID 12468082 DOI: 10.1016/S0378-1119(02)00852-1  0.357
2002 DeFilippis VR, Ayala FJ, Villarreal LP. Evidence of diversifying selection in human papillomavirus type 16 E6 but not E7 oncogenes. Journal of Molecular Evolution. 55: 491-9. PMID 12355268 DOI: 10.1007/S00239-002-2344-Y  0.64
2002 Rodríguez-Trelles F, Tarrío R, Ayala FJ. A methodological bias toward overestimation of molecular evolutionary time scales. Proceedings of the National Academy of Sciences of the United States of America. 99: 8112-8115. PMID 12060757 DOI: 10.1073/Pnas.122231299  0.77
2002 Balakirev ES, Balakirev EI, Ayala FJ. Molecular evolution of the Est-6 gene in Drosophila melanogaster: contrasting patterns of DNA variability in adjacent functional regions. Gene. 288: 167-77. PMID 12034506 DOI: 10.1016/S0378-1119(02)00477-8  0.327
2002 Machado CA, Ayala FJ. Sequence variation in the dihydrofolate reductase-thymidylate synthase (DHFR-TS) and trypanothione reductase (TR) genes of Trypanosoma cruzi. Molecular and Biochemical Parasitology. 121: 33-47. PMID 11985861 DOI: 10.1016/S0166-6851(02)00019-1  0.558
2002 Rodríguez-Trelles F, Tarrío R, Ayala FJ. Xanthine dehydrogenase (XDH): episodic evolution of a "neutral" protein. Journal of Molecular Evolution. 53: 485-95. PMID 11675609 DOI: 10.1007/s002390010239  0.334
2001 Tatarenkov A, Ayala FJ. Phylogenetic relationships among species groups of the virilis-repleta radiation of Drosophila. Molecular Phylogenetics and Evolution. 21: 327-31. PMID 11697926 DOI: 10.1006/Mpev.2001.1002  0.663
2001 Rodríguez-Trelles F, Tarrío R, Ayala FJ. Erratic overdispersion of three molecular clocks: GPDH, SOD, and XDH. Proceedings of the National Academy of Sciences of the United States of America. 98: 11405-10. PMID 11553790 DOI: 10.1073/pnas.201392198  0.319
2001 Tatarenkov A, Zurovcová M, Ayala FJ. Ddc and amd sequences resolve phylogenetic relationships of Drosophila. Molecular Phylogenetics and Evolution. 20: 321-5. PMID 11476641 DOI: 10.1006/Mpev.2001.0967  0.647
2001 Tarrío R, Rodríguez-Trelles F, Ayala FJ. Shared Nucleotide Composition Biases Among Species and Their Impact on Phylogenetic Reconstructions of the Drosophilidae Molecular Biology and Evolution. 18: 1464-1473. PMID 11470837 DOI: 10.1093/Oxfordjournals.Molbev.A003932  0.344
2001 Machado CA, Ayala FJ. Nucleotide sequences provide evidence of genetic exchange among distantly related lineages of Trypanosoma cruzi. Proceedings of the National Academy of Sciences of the United States of America. 98: 7396-401. PMID 11416213 DOI: 10.1073/pnas.121187198  0.549
2001 Urdaneta L, Lal A, Barnabe C, Oury B, Goldman I, Ayala FJ, Tibayrenc M. Evidence for clonal propagation in natural isolates of Plasmodium falciparum from Venezuela. Proceedings of the National Academy of Sciences of the United States of America. 98: 6725-9. PMID 11371616 DOI: 10.1073/pnas.111144998  0.362
2001 Ayala FJ. Neutralism and selectionism: the molecular clock. Gene. 261: 27-33. PMID 11164034 DOI: 10.1016/S0378-1119(00)00479-0  0.352
2000 Rodríguez-Trelles F, Tarrío R, Ayala FJ. Evidence for a High Ancestral GC Content in Drosophila Molecular Biology and Evolution. 17: 1710-1717. PMID 11070058 DOI: 10.1093/Oxfordjournals.Molbev.A026269  0.34
2000 Tarrío R, Rodríguez-Trelles F, Ayala FJ. Tree rooting with outgroups when they differ in their nucleotide composition from the ingroup: the Drosophila saltans and willistoni groups, a case study. Molecular Phylogenetics and Evolution. 16: 344-9. PMID 10991788 DOI: 10.1006/MPEV.2000.0813  0.343
2000 Ayala FJ, Fitch WM, Clegg MT. Variation and evolution in plants and microorganisms: toward a new synthesis 50 years after Stebbins. Proceedings of the National Academy of Sciences of the United States of America. 97: 6941-4. PMID 10860953 DOI: 10.1073/Pnas.97.13.6941  0.348
2000 Rodríguez-Trelles F, Tarrío R, Ayala FJ. Disparate evolution of paralogous introns in the Xdh gene of Drosophila. Journal of Molecular Evolution. 50: 123-30. PMID 10684346 DOI: 10.1007/s002399910014  0.358
2000 Rodríguez-Trelles F, Tarrío R, Ayala FJ. Fluctuating mutation bias and the evolution of base composition in Drosophila. Journal of Molecular Evolution. 50: 1-10. PMID 10654254 DOI: 10.1007/s002399910001  0.344
2000 Ayala FJ. Evolution of biological diversity Bioessays. 22: 681-682. DOI: 10.1002/1521-1878(200007)22:7<681::AID-BIES11>3.0.CO;2-C  0.329
1999 Kwiatowski J, Ayala FJ. Phylogeny of Drosophila and related genera: conflict between molecular and anatomical analyses. Molecular Phylogenetics and Evolution. 13: 319-328. PMID 10603260 DOI: 10.1006/Mpev.1999.0657  0.345
1999 Tibayrenc M, Ayala FJ. Evolutionary genetics of Trypanosoma and Leishmania. Microbes and Infection. 1: 465-472. PMID 10602679 DOI: 10.1016/S1286-4579(99)80050-1  0.379
1999 Rodríguez-Trelles F, Tarrío R, Ayala FJ. Molecular evolution and phylogeny of the Drosophila saltans species group inferred from the Xdh gene. Molecular Phylogenetics and Evolution. 13: 110-21. PMID 10508544 DOI: 10.1006/MPEV.1999.0631  0.393
1999 Ochando MD, Ayala FJ. Fitness of wild-caught Drosophila melanogaster females: allozyme variants of GPDH, ADH, PGM, and EST. Genetica. 105: 7-18. PMID 10483089 DOI: 10.1023/A:1003592716175  0.301
1999 Abderrazak SB, Oury B, Lal AA, Bosseno MF, Force-Barge P, Dujardin JP, Fandeur T, Molez JF, Kjellberg F, Ayala FJ, Tibayrenc M. Plasmodium falciparum: population genetic analysis by multilocus enzyme electrophoresis and other molecular markers. Experimental Parasitology. 92: 232-8. PMID 10425151 DOI: 10.1006/EXPR.1999.4424  0.363
1999 Tatarenkov A, Sáez AG, Ayala FJ. A compact gene cluster in Drosophila: the unrelated Cs gene is compressed between duplicated amd and Ddc. Gene. 231: 111-20. PMID 10231575 DOI: 10.1016/S0378-1119(99)00096-7  0.674
1999 Tatarenkov A, Kwiatowski J, Skarecky D, Barrio E, Ayala FJ. On the evolution of Dopa decarboxylase (Ddc) and Drosophila systematics. Journal of Molecular Evolution. 48: 445-62. PMID 10079283 DOI: 10.1007/Pl00006489  0.801
1999 Ayala FJ. Molecular clock mirages. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 21: 71-5. PMID 10070256 DOI: 10.1002/(SICI)1521-1878(199901)21:1<71::AID-BIES9>3.0.CO;2-B  0.328
1999 Ayala FJ. Adaptation and novelty: teleological explanations in evolutionary biology. History and Philosophy of the Life Sciences. 21: 3-33. DOI: 10.1016/B978-0-12-803693-8.00007-4  0.311
1999 Rzhetsky A, Ayala FJ. The enigma of intron origins Cellular and Molecular Life Sciences Cmls. 55: 3-6. DOI: 10.1007/s000180050264  0.314
1998 Pascual M, Serra L, Ayala FJ. INTERSPECIFIC LABORATORY COMPETITION OF THE RECENTLY SYMPATRIC SPECIES DROSOPHILA SUBOBSCURA AND DROSOPHILA PSEUDOOBSCURA. Evolution; International Journal of Organic Evolution. 52: 269-274. PMID 28568145 DOI: 10.1111/J.1558-5646.1998.Tb05162.X  0.648
1998 Tarrío R, Rodríguez-Trelles F, Ayala FJ. New Drosophila introns originate by duplication. Proceedings of the National Academy of Sciences of the United States of America. 95: 1658-62. PMID 9465072 DOI: 10.1073/PNAS.95.4.1658  0.386
1997 Ayala FJ. Vagaries of the molecular clock. Proceedings of the National Academy of Sciences of the United States of America. 94: 7776-83. PMID 9223263 DOI: 10.1073/PNAS.94.15.7776  0.339
1997 Hudson RR, Sáez AG, Ayala FJ. DNA variation at the Sod locus of Drosophila melanogaster: an unfolding story of natural selection. Proceedings of the National Academy of Sciences of the United States of America. 94: 7725-9. PMID 9223255 DOI: 10.1073/PNAS.94.15.7725  0.341
1997 Ayala FJ, Fitch WM. Genetics and the origin of species: An introduction Proceedings of the National Academy of Sciences of the United States of America. 94: 7691-7697. PMID 9223250 DOI: 10.1073/Pnas.94.15.7691  0.356
1997 Rzhetsky A, Ayala FJ, Hsu LC, Chang C, Yoshida A. Exon/intron structure of aldehyde dehydrogenase genes supports the "introns-late" theory. Proceedings of the National Academy of Sciences of the United States of America. 94: 6820-5. PMID 9192649 DOI: 10.1073/pnas.94.13.6820  0.338
1997 Kwiatowski J, Krawczyk M, Jaworski M, Skarecky D, Ayala FJ. Erratic evolution of glycerol-3-phosphate dehydrogenase in Drosophila, Chymomyza, and Ceratitis. Journal of Molecular Evolution. 44: 9-22. PMID 9010132 DOI: 10.1007/PL00006126  0.345
1997 Barrio E, Ayala FJ. Evolution of the Drosophila obscura species group inferred from the Gpdh and Sod genes. Molecular Phylogenetics and Evolution. 7: 79-93. PMID 9007023 DOI: 10.1006/mpev.1996.0375  0.706
1997 Ayala FJ. Genetics and the origin of species: National Academy of Sciences Colloquium, Irvine, California, 30 January-1 February, 1997 Bioessays. 19: 651-652. DOI: 10.1002/Bies.950190716  0.325
1996 Ayala FJ, Campbell CD, Selander RK. Molecular population genetics of the alcohol dehydrogenase locus in the Hawaiian drosophilid D. mimica. Molecular Biology and Evolution. 13: 1363-7. PMID 8952080 DOI: 10.1093/Oxfordjournals.Molbev.A025582  0.608
1996 Ayala FJ, Barrio E, Kwiatowski J. Molecular clock or erratic evolution? A tale of two genes. Proceedings of the National Academy of Sciences of the United States of America. 93: 11729-34. PMID 8876205 DOI: 10.1073/pnas.93.21.11729  0.69
1996 Ayala FJ, Escalante AA. The evolution of human populations: a molecular perspective. Molecular Phylogenetics and Evolution. 5: 188-201. PMID 8673287 DOI: 10.1006/Mpev.1996.0013  0.361
1996 Ayala FJ. The myth of Eve: molecular biology and human origins. Science (New York, N.Y.). 270: 1930-6. PMID 8533083 DOI: 10.1126/science.270.5244.1930  0.356
1995 Moya A, Galiana A, Ayala FJ. Founder-effect speciation theory: failure of experimental corroboration. Proceedings of the National Academy of Sciences of the United States of America. 92: 3983-6. PMID 7732017 DOI: 10.1073/Pnas.92.9.3983  0.574
1995 Kwiatowski J, Krawczyk M, Kornacki M, Bailey K, Ayala FJ. Evidence against the exon theory of genes derived from the triose-phosphate isomerase gene. Proceedings of the National Academy of Sciences of the United States of America. 92: 8503-6. PMID 7667319 DOI: 10.1073/PNAS.92.18.8503  0.363
1995 Escalante AA, Barrio E, Ayala FJ. Evolutionary origin of human and primate malarias: evidence from the circumsporozoite protein gene. Molecular Biology and Evolution. 12: 616-26. PMID 7659017 DOI: 10.1093/Oxfordjournals.Molbev.A040241  0.675
1995 Escalante AA, Ayala FJ. Evolutionary origin of Plasmodium and other Apicomplexa based on rRNA genes. Proceedings of the National Academy of Sciences of the United States of America. 92: 5793-7. PMID 7597031 DOI: 10.1073/Pnas.92.13.5793  0.341
1994 Fitch WM, Ayala FJ. The superoxide dismutase molecular clock revisited Proceedings of the National Academy of Sciences of the United States of America. 91: 6802-6807. PMID 8041700 DOI: 10.1073/Pnas.91.15.6802  0.318
1994 Ayala FJ, Escalante A, O'Huigin C, Klein J. Molecular genetics of speciation and human origins. Proceedings of the National Academy of Sciences of the United States of America. 91: 6787-94. PMID 8041698 DOI: 10.1073/Pnas.91.15.6787  0.384
1994 Fitch WM, Ayala FJ. Tempo and mode in evolution Proceedings of the National Academy of Sciences of the United States of America. 91: 6717-6720. PMID 8041688 DOI: 10.1073/Pnas.91.15.6717  0.389
1994 Escalante AA, Ayala FJ. Phylogeny of the malarial genus Plasmodium, derived from rRNA gene sequences. Proceedings of the National Academy of Sciences of the United States of America. 91: 11373-7. PMID 7972067 DOI: 10.1073/Pnas.91.24.11373  0.307
1994 Kwiatowski J, Latorre A, Skarecky D, Ayala FJ. Characterization of a Cu/Zn superoxide dismutase-encoding gene region in Drosophila willistoni. Gene. 147: 295-6. PMID 7926818 DOI: 10.1016/0378-1119(94)90085-X  0.652
1994 Kwiatowski J, Skarecky D, Bailey K, Ayala FJ. Phylogeny of Drosophila and related genera inferred from the nucleotide sequence of the Cu,Zn Sod gene. Journal of Molecular Evolution. 38: 443-54. PMID 7545938 DOI: 10.1007/BF00178844  0.378
1994 Kwiatowski J, Skarecky D, Burgos M, Ayala FJ. Structure and sequence of the Cu, Zn superoxide dismutase gene of Chymomyza amoena: phylogeny of the genus and codon-use evolution. Insect Molecular Biology. 1: 3-13. PMID 1343773 DOI: 10.1111/j.1365-2583.1993.tb00072.x  0.353
1994 Kwiatowski J, Skarecky D, Ayala FJ. Structure and sequence of the Cu,Zn Sod gene in the Mediterranean fruit fly, Ceratitis capitata: intron insertion/deletion and evolution of the gene. Molecular Phylogenetics and Evolution. 1: 72-82. PMID 1342926 DOI: 10.1016/1055-7903(92)90037-H  0.367
1993 Galiana A, Moya A, Ayala FJ. FOUNDER-FLUSH SPECIATION IN DROSOPHILA PSEUDOOBSCURA: A LARGE-SCALE EXPERIMENT. Evolution; International Journal of Organic Evolution. 47: 432-444. PMID 28568735 DOI: 10.1111/J.1558-5646.1993.Tb02104.X  0.598
1993 Tibayrenc M, Neubauer K, Barnabé C, Guerrini F, Skarecky D, Ayala FJ. Genetic characterization of six parasitic protozoa: parity between random-primer DNA typing and multilocus enzyme electrophoresis. Proceedings of the National Academy of Sciences of the United States of America. 90: 1335-9. PMID 8433991 DOI: 10.1073/PNAS.90.4.1335  0.354
1993 Pujol C, Reynes J, Renaud F, Raymond M, Tibayrenc M, Ayala FJ, Janbon F, Mallié M, Bastide JM. The yeast Candida albicans has a clonal mode of reproduction in a population of infected human immunodeficiency virus-positive patients. Proceedings of the National Academy of Sciences of the United States of America. 90: 9456-9. PMID 8415722 DOI: 10.1073/Pnas.90.20.9456  0.327
1993 Tyler RH, Brar H, Singh M, Latorre A, Graves JL, Mueller LD, Rose MR, Ayala FJ. The effect of superoxide dismutase alleles on aging in Drosophila. Genetica. 91: 143-9. PMID 8125265 DOI: 10.1007/Bf01435994  0.783
1992 Barrio E, Latorre A, Moya A, Ayala FJ. Phylogenetic reconstruction of the Drosophila obscura group, on the basis of mitochondrial DNA. Molecular Biology and Evolution. 9: 621-35. PMID 1630303 DOI: 10.1093/Oxfordjournals.Molbev.A040749  0.785
1991 Tibayrenc M, Ayala FJ. Towards a population genetics of microorganisms: The clonal theory of parasitic protozoa. Parasitology Today. 7: 228-232. PMID 15463504 DOI: 10.1016/0169-4758(91)90234-F  0.348
1991 Guo PZ, Mueller LD, Ayala FJ. Evolution of behavior by density-dependent natural selection. Proceedings of the National Academy of Sciences of the United States of America. 88: 10905-6. PMID 1961760 DOI: 10.1073/Pnas.88.23.10905  0.717
1991 Milosevic M, Moya A, Ayala FJ. Fertility and viability at the Sod locus in Drosophila melanogaster: non-additive and asymmetric selection. Genetical Research. 57: 267-72. PMID 1909679  0.518
1991 Mueller LD, Guo PZ, Ayala FJ. Density-dependent natural selection and trade-offs in life history traits. Science (New York, N.Y.). 253: 433-5. PMID 1907401 DOI: 10.1126/Science.1907401  0.714
1991 Peng TX, Moya A, Ayala FJ. Two modes of balancing selection in Drosophila melanogaster: overcompensation and overdominance. Genetics. 128: 381-91. PMID 1906418  0.566
1991 Kwiatowski J, Skarecky D, Hernandez S, Pham D, Quijas F, Ayala FJ. High fidelity of the polymerase chain reaction. Molecular Biology and Evolution. 8: 884-887. PMID 1775068 DOI: 10.1093/Oxfordjournals.Molbev.A040693  0.321
1991 Tibayrenc M, Kjellberg F, Arnaud J, Oury B, Brenière SF, Dardé ML, Ayala FJ. Are eukaryotic microorganisms clonal or sexual? A population genetics vantage. Proceedings of the National Academy of Sciences of the United States of America. 88: 5129-33. PMID 1675793 DOI: 10.1073/PNAS.88.12.5129  0.323
1990 Tibayrenc M, Kjellberg F, Ayala FJ. A clonal theory of parasitic protozoa: the population structures of Entamoeba, Giardia, Leishmania, Naegleria, Plasmodium, Trichomonas, and Trypanosoma and their medical and taxonomical consequences Proceedings of the National Academy of Sciences of the United States of America. 87: 2414-2418. PMID 2320563 DOI: 10.1073/Pnas.87.7.2414  0.338
1990 Milosevi? M, Moya A, Ayala FJ. Overcompensation as a mechanism for maintaining polymorphism: egg-to-adult viability in Drosophila. Genetica. 82: 183-7. PMID 2128629  0.563
1989 Bierbaum TJ, Mueller LD, Ayala FJ. DENSITY-DEPENDENT EVOLUTION OF LIFE-HISTORY TRAITS IN DROSOPHILA MELANOGASTER. Evolution; International Journal of Organic Evolution. 43: 382-392. PMID 28568549 DOI: 10.1111/j.1558-5646.1989.tb04234.x  0.715
1989 Chang HY, Ayala FJ. ON THE ORIGIN OF INCIPIENT REPRODUCTIVE ISOLATION: THE CASE OF DROSOPHILA ALBOMICANS AND D. NASUTA. Evolution; International Journal of Organic Evolution. 43: 1610-1624. PMID 28564329 DOI: 10.1111/j.1558-5646.1989.tb02612.x  0.349
1989 Lenski RE, Slatkin M, Ayala FJ. Mutation and selection in bacterial populations: alternatives to the hypothesis of directed mutation. Proceedings of the National Academy of Sciences of the United States of America. 86: 2775-8. PMID 2704747 DOI: 10.1073/Pnas.86.8.2775  0.525
1989 Lenski RE, Slatkin M, Ayala FJ. Another alternative to directed mutation. Nature. 337: 123-4. PMID 2643054 DOI: 10.1038/337123B0  0.411
1989 Chang HY, Wang DG, Ayala FJ. Mitochondrial DNA evolution in the Drosophila nasuta subgroup of species. Journal of Molecular Evolution. 28: 337-48. PMID 2543832 DOI: 10.1007/BF02103430  0.384
1989 Ayala FJ, Serra L, Prevosti A. A grand experiment in evolution: The Drosophila subobscura colonization of the Americas Genome. 31: 246-255. DOI: 10.1139/G89-042  0.8
1989 Ayala FJ. The Biology Of Populations Evolution. 43: 697-698. DOI: 10.1111/J.1558-5646.1989.Tb04269.X  0.351
1989 Moya A, Ayala FJ. Fertility interactions in Drosophila: Theoretical model and experimental tests Journal of Evolutionary Biology. 2: 1-12. DOI: 10.1046/J.1420-9101.1989.2010001.X  0.572
1988 Tibayrenc M, Ayala FJ. Isozyme Variability In Trypanosoma Cruzi, The Agent Of Chagas' Disease: Genetical, Taxonomical, And Epidemiological Significance. Evolution. 42: 277-292. PMID 28567853 DOI: 10.1111/J.1558-5646.1988.Tb04132.X  0.345
1988 Zhang Q, Tibayrenc M, Ayala FJ. Linkage disequilibrium in natural populations of Trypanosoma cruzi (flagellate), the agent of Chagas' disease. Journal of Eukaryotic Microbiology. 35: 81-85. PMID 3285002 DOI: 10.1111/J.1550-7408.1988.Tb04081.X  0.37
1988 Latorre A, Barrio E, Moya A, Ayala FJ. Mitochondrial DNA evolution in the Drosophila obscura group. Molecular Biology and Evolution. 5: 717-28. PMID 3221793 DOI: 10.1093/Oxfordjournals.Molbev.A040526  0.78
1988 Smit-McBride Z, Moya A, Ayala FJ. Linkage disequilibrium in natural and experimental populations of Drosophila melanogaster. Genetics. 120: 1043-51. PMID 3147215  0.563
1988 Ayala FJ. Creation/Evolution Controversies Bioscience. 38: 705-707. DOI: 10.2307/1310881  0.315
1987 Marinkovi? D, Tuci? N, Moya A, Ayala FJ. Genetic Diversity and Linkage Disequilibrium in Drosophila melanogaster with Different Rates of Development. Genetics. 117: 513-20. PMID 17246407  0.588
1987 Tibayrenc M, Ayala FJ. Trypanosoma cruzi populations: more clonal than sexual. Parasitology Today. 3: 189-190. PMID 15462954 DOI: 10.1016/0169-4758(87)90179-7  0.302
1987 Ayala FJ. Evolution and creation: one missed opportunity Bioscience. 37: 450-450. DOI: 10.1093/Bioscience/37.7.450  0.307
1986 Latorre A, Moya A, Ayala FJ. Evolution of mitochondrial DNA in Drosophila subobscura. Proceedings of the National Academy of Sciences of the United States of America. 83: 8649-53. PMID 16578796 DOI: 10.1073/Pnas.83.22.8649  0.749
1986 Caillard T, Tibayrenc M, Pont FL, Dujardin JP, Desjeux P, Ayala FJ. Diagnosis by Isozyme Methods of Two Cryptic Species, Psychodopygus Carrerai and P. Yucumensis (Diptera: Psychodidae) Journal of Medical Entomology. 23: 489-492. PMID 3772955 DOI: 10.1093/Jmedent/23.5.489  0.323
1986 Tibayrenc M, Ward P, Moya A, Ayala FJ. Natural populations of Trypanosoma cruzi, the agent of Chagas disease, have a complex multiclonal structure. Proceedings of the National Academy of Sciences of the United States of America. 83: 115-9. PMID 3510428 DOI: 10.1073/Pnas.83.1.115  0.611
1986 Peng TX, Moya A, Ayala FJ. Irradiation-resistance conferred by superoxide dismutase: possible adaptive role of a natural polymorphism in Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 83: 684-7. PMID 3080745 DOI: 10.1073/Pnas.83.3.684  0.581
1986 Ayala FJ. On the virtues and pitfalls of the molecular evolutionary clock Journal of Heredity. 77: 226-235. PMID 3020121 DOI: 10.1093/Oxfordjournals.Jhered.A110227  0.351
1986 Ayala FJ. Whither Mankind? The Choice Between a Genetic Twilight and a Moral Twilight Integrative and Comparative Biology. 26: 895-906. DOI: 10.1093/Icb/26.3.895  0.349
1986 Marinkovic D, Ayala FJ. Genetic variation for rate of development in natural populations of Drosophila melanogaster Genetica. 71: 123-132. DOI: 10.1007/Bf00058695  0.32
1985 Mueller LD, Barr LG, Ayala FJ. Natural selection vs. random drift: evidence from temporal variation in allele frequencies in nature. Genetics. 111: 517-54. PMID 4054608  0.721
1985 Lee YM, Friedman DJ, Ayala FJ. Superoxide dismutase: an evolutionary puzzle. Proceedings of the National Academy of Sciences of the United States of America. 82: 824-8. PMID 3919383 DOI: 10.1073/PNAS.82.3.824  0.32
1985 Stebbins GL, Ayala FJ. The Evolution of Darwinism Scientific American. 253: 72-82. DOI: 10.1038/Scientificamerican0785-72  0.324
1984 Ayala FJ, McDonald JF. Continuous variation: Possible role of regulatory genes Genetica. 52: 1-15. DOI: 10.1007/Bf00121808  0.505
1983 Ayala FJ. Molecular polymorphism: How much is there and why is there so much? Developmental Genetics. 4: 379-391. DOI: 10.1002/Dvg.1020040412  0.384
1982 Mueller LD, Ayala FJ. Estimation and interpretation of genetic distance in empirical studies. Genetical Research. 40: 127-37. PMID 7152254 DOI: 10.1017/S0016672300019005  0.704
1982 Ayala FJ. Genetic variation in natural populations: problem of electrophoretically cryptic alleles. Proceedings of the National Academy of Sciences of the United States of America. 79: 550-4. PMID 6804943 DOI: 10.1073/pnas.79.2.550  0.31
1982 Mueller LD, Ayala FJ. Population Dynamics in the Serial Transfer System: Comments on Haddon's Model The American Naturalist. 120: 548-550. DOI: 10.1086/284012  0.695
1981 Mueller LD, Ayala FJ. Trade-off between r-selection and K-selection in Drosophila populations. Proceedings of the National Academy of Sciences of the United States of America. 78: 1303-5. PMID 16592964 DOI: 10.1073/Pnas.78.2.1303  0.722
1981 Mueller LD, Ayala FJ. Fitness and density-dependent population growth in Drosophila melanogaster. Genetics. 97: 667-77. PMID 6795084  0.69
1981 Mueller LD, Ayala FJ. Dynamics of Single-Species Population Growth: Stability or Chaos? Ecology. 62: 1148-1154. DOI: 10.2307/1937278  0.734
1981 Ayala FJ. Integrating Population Genetics/Ecology Bioscience. 31: 69-69. DOI: 10.2307/1308193  0.316
1981 Mueller LD, Ayala FJ. Dynamics of single-species population growth: Experimental and statistical analysis Theoretical Population Biology. 20: 101-117. DOI: 10.1016/0040-5809(81)90005-8  0.716
1981 Tucić N, Ayala FJ, Marinković D. Correlation between recombination frequency and fitness in Drosophila melanogaster Genetica. 56: 61-69. DOI: 10.1007/BF00126931  0.312
1980 Marks RW, Brittnacher JG, McDonald JF, Prout T, Ayala FJ. Wineries, drosophila, alcohol, and Adh. Oecologia. 47: 141-144. PMID 28309643 DOI: 10.1007/BF00541790  0.469
1980 Toŝić M, Ayala FJ. ‘Overcompensation’ at an enzyme locus in Drosophila pseudoobscura * Genetics Research. 36: 57-67. DOI: 10.1017/S0016672300019662  0.343
1979 Bruce EJ, Ayala FJ. PHYLOGENETIC RELATIONSHIPS BETWEEN MAN AND THE APES: ELECTROPHORETIC EVIDENCE. Evolution; International Journal of Organic Evolution. 33: 1040-1056. PMID 28563920 DOI: 10.1111/j.1558-5646.1979.tb04760.x  0.304
1979 Chambers GK, McDonald JF, McElfresh M, Ayala FJ. Alcohol-oxidizing enzymes in 13 Drosophila species. Biochemical Genetics. 16: 757-67. PMID 103541 DOI: 10.1007/BF00484733  0.459
1979 Ayala FJ, Valentine JW. Genetic Variability in the Pelagic Environment: A Paradox? Ecology. 60: 24-29. DOI: 10.2307/1936463  0.358
1978 Marinkovic a, Ayala FJ, Andjelković M. Genetic Polymorphism And Phylogeny Of Drosophila Subobscura Evolution. 32: 164-173. PMID 28564092 DOI: 10.1111/J.1558-5646.1978.Tb01106.X  0.404
1978 Brittnacher JG, Sims SR, Ayala FJ. GENETIC DIFFERENTIATION BETWEEN SPECIES OF THE GENUS SPEYERIA (LEPIDOPTERA: NYMPHALIDAE). Evolution; International Journal of Organic Evolution. 32: 199-210. PMID 28564085 DOI: 10.1111/j.1558-5646.1978.tb01110.x  0.378
1978 Bruce EJ, Ayala FJ. Humans and apes are genetically very similar. Nature. 276: 264-5. PMID 714154 DOI: 10.1038/276264a0  0.359
1978 McDonald JF, Chambers GK, David J, Ayala FJ. Adaptive response due to changes in gene regulation: a study with Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 74: 4562-6. PMID 412190 DOI: 10.1073/Pnas.74.10.4562  0.492
1978 Fletcher TS, Ayala FJ, Thatcher DR, Chambers GK. Structural analysis of the ADHS electromorph of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 75: 5609-12. PMID 103098 DOI: 10.1073/PNAS.75.11.5609  0.378
1978 McDonald JF, Ayala FJ. Gene regulation in adaptive evolution. Canadian Journal of Genetics and Cytology. Journal Canadien De Genetique Et De Cytologie. 20: 159-75. PMID 100192 DOI: 10.1139/G78-018  0.523
1977 Ayala FJ. Evolutionary Genetics: Wright's Treatise Continued. Science. 196: 1191-1192. PMID 17787082 DOI: 10.1126/Science.196.4295.1191  0.301
1977 Anderson WW, Ayala FJ, Michod RE. Chromosomal and allozymic diagnosis of three species of Drosophila. Drosophila pseudoobscura, D. persimilis, and D. miranda. The Journal of Heredity. 68: 71-4. PMID 874309 DOI: 10.1093/Oxfordjournals.Jhered.A108793  0.518
1977 Powell JR, Dobzhansky T, Ayala FJ, Stebbins GL, Valentine JW. The Textbook Systematic Botany. 2: 228. DOI: 10.2307/2418273  0.627
1977 Mayr E, Dobzhansky T, Ayala F, Stebbins GL, Valentine JW. An Almost Comprehensive Survey of Evolution Evolution. 31: 913. DOI: 10.2307/2407458  0.489
1976 Avise JC, Ayala FJ. GENETIC DIFFERENTIATION IN SPECIOSE VERSUS DEPAUPERATE PHYLADS: EVIDENCE FROM THE CALIFORNIA MINNOWS. Evolution; International Journal of Organic Evolution. 30: 46-58. PMID 28565048 DOI: 10.1111/j.1558-5646.1976.tb00880.x  0.571
1976 Mandel D, Fletcher WW, Ayala FJ, Dobzhansky T. Modern Man Looks at Evolution Leonardo. 9: 332. DOI: 10.2307/1573368  0.514
1976 Ayala FJ, Prout T. In memoriam: Theodosius Dobzhansky1900–1975 Social Biology. 23: 101-107. DOI: 10.1080/19485565.1976.9988215  0.561
1975 Avise JC, Smith JJ, Ayala FJ. ADAPTIVE DIFFERENTIATION WITH LITTLE GENIC CHANGE BETWEEN TWO NATIVE CALIFORNIA MINNOWS. Evolution; International Journal of Organic Evolution. 29: 411-426. PMID 28563177 DOI: 10.1111/j.1558-5646.1975.tb00831.x  0.592
1975 Ayala FJ, Valentine JW, Hedgecock D, Barr LG. DEEP-SEA ASTEROIDS: HIGH GENETIC VARIABILITY IN A STABLE ENVIRONMENT. Evolution; International Journal of Organic Evolution. 29: 203-212. PMID 28555845 DOI: 10.1111/J.1558-5646.1975.Tb00201.X  0.342
1975 Marinković D, Ayala FJ. Fitness of allozyme variants in Drosophila pseudoobscura. II. Selection at the Est-5, Odh and Mdh-2 loci. Genetical Research. 24: 137-49. PMID 4452479 DOI: 10.1017/S0016672300015172  0.331
1975 Avise JC, Ayala FJ. Genetic change and rates of cladogenesis. Genetics. 81: 757-73. PMID 1213274  0.489
1975 Fontdevila A, Mendez J, Ayala FJ, McDonald J. Maintenance of allozyme polymorphisms in experimental populations of Drosophila. Nature. 255: 149-51. PMID 1128678 DOI: 10.1038/255149A0  0.715
1975 Richmond RC, Gilpin ME, Salas SP, Ayala FJ. A Search for Emergent Competitive Phenomena: The Dynamics of Multispecies Drosophila Systems Ecology. 56: 709-714. DOI: 10.2307/1935506  0.674
1975 McDonald JF, Ayala FJ. Molecular Study of Evolution—A Symposium Bioscience. 25: 812-813. DOI: 10.2307/1297232  0.435
1975 Valentine JW, Ayala FJ. Genetic variation in Frieleia halli, a deep-sea brachiopod Deep-Sea Research and Oceanographic Abstracts. 22: 37-44. DOI: 10.1016/0011-7471(75)90016-9  0.333
1975 Campbell CA, Valentine JW, Ayala FJ. High genetic variability in a population of Tridacna maxima from the Great Barrier Reef Marine Biology. 33: 341-345. DOI: 10.1007/BF00390572  0.348
1974 Ayala FJ, Tracey ML, Hedgecock D, Richmond RC. GENETIC DIFFERENTIATION DURING THE SPECIATION PROCESS IN DROSOPHILA. Evolution; International Journal of Organic Evolution. 28: 576-592. PMID 28564832 DOI: 10.1111/J.1558-5646.1974.Tb00791.X  0.714
1974 Ayala FJ, Tracey ML, Barr LG, Ehrenfeld JG. GENETIC AND REPRODUCTIVE DIFFERENTIATION OF THE SUBSPECIES, DROSOPHILA EQUINOXIALIS CARIBBENSIS. Evolution; International Journal of Organic Evolution. 28: 24-41. PMID 28563025 DOI: 10.1111/j.1558-5646.1974.tb00723.x  0.327
1974 Mcdonald JF, Ayala FJ. Genetic response to environmental heterogeneity. Nature. 250: 572-574. PMID 4845657 DOI: 10.1038/250572A0  0.533
1974 Ayala FJ, Gilpin ME. Gene frequency comparisons between taxa: support for the natural selection of protein polymorphisms. Proceedings of the National Academy of Sciences of the United States of America. 71: 4847-9. PMID 4531023 DOI: 10.1073/PNAS.71.12.4847  0.407
1974 Ayala FJ, Valentine JW, Barr LG, Zumwalt GS. Genetic variability in a temperate intertidal Phoronid, Phoronopsis viridis Biochemical Genetics. 11: 413-427. PMID 4424653 DOI: 10.1007/BF00486075  0.341
1974 Ayala FJ, Tracey ML. Genetic differentiation within and between species of the Drosophila willistoni group. Proceedings of the National Academy of Sciences of the United States of America. 71: 999-1003. PMID 4362644 DOI: 10.1073/PNAS.71.3.999  0.395
1974 Hedgecock D, Ayala FJ. Evolutionary Divergence in the Genus Taricha (Salamandridae) Copeia. 1974: 738. DOI: 10.2307/1442687  0.308
1973 Ayala FJ, Hedgecock D, Zumwalt GS, Valentine JW. GENETIC VARIATION IN TRIDACNA MAXIMA, AN ECOLOGICAL ANALOG OF SOME UNSUCCESSFUL EVOLUTIONARY LINEAGES. Evolution; International Journal of Organic Evolution. 27: 177-191. PMID 28564772 DOI: 10.1111/J.1558-5646.1973.Tb00664.X  0.372
1973 Ayala FJ, Powell JR, Tracey ML. Enzyme variability in the Drosophila Willistoni group. V. Genic variation in natural populations of Drosophila equinoxialis. Genetical Research. 20: 19-42. PMID 5084410 DOI: 10.1017/S0016672300013562  0.609
1973 Ayala FJ, Gilpin ME, Ehrenfeld JG. Competition between species: theoretical models and experimental tests. Theoretical Population Biology. 4: 331-56. PMID 4747658 DOI: 10.1016/0040-5809(73)90014-2  0.334
1973 Ayala FJ, Powell JR. Enzyme variability in the Drosophila willistoni group. VI. Levels of polymorphism and the physiological function of enzymes. Biochemical Genetics. 7: 331-45. PMID 4646770 DOI: 10.1007/BF00484832  0.611
1973 Dobzhansky T, Ayala FJ. Temporal frequency changes of enzyme and chromosomal polymorphisms in natural populations of Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 70: 680-3. PMID 4514981 DOI: 10.1073/Pnas.70.3.680  0.505
1973 Ayala FJ, Anderson WW. Evidence of natural selection in molecular evolution Nature New Biol.. 241: 274-276. PMID 4511914 DOI: 10.1038/Newbio241274A0  0.588
1973 Valentine JW, Hedgecock D, Zumwalt GS, Ayala FJ. Mass Extinctions and Genetic Polymorphism in the “Killer Clam,” Tridacna Geological Society of America Bulletin. 84: 3411-3414. DOI: 10.1130/0016-7606(1973)84<3411:Meagpi>2.0.Co;2  0.309
1972 Mourão CA, Ayala FJ, Anderson WW. Darwinian fitness and adaptedness in experimental populations of Drosophila willistoni Genetica. 43: 552-574. PMID 4657883 DOI: 10.1007/BF00115598  0.551
1972 Ayala FJ, Powell JR. Allozymes as diagnostic characters of sibling species of Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 69: 1094-6. PMID 4504321 DOI: 10.1073/PNAS.69.5.1094  0.628
1972 Ayala FJ. Ecology Population Ecology Lowell Adams Bioscience. 22: 56-56. DOI: 10.2307/1296191  0.317
1971 Ayala FJ, Powell JR, Dobzhansky T. Polymorphisms in continental and island populations of Drosophila willistoni. Proceedings of the National Academy of Sciences of the United States of America. 68: 2480-3. PMID 5289881 DOI: 10.1073/Pnas.68.10.2480  0.71
1970 Ayala FJ. An evolutionary dilemma: fitness of genotypes versus fitness of populations. Canadian Journal of Genetics and Cytology. Journal Canadien De Genetique Et De Cytologie. 11: 439-56. PMID 5356569 DOI: 10.1139/G69-053  0.329
1970 Ayala FJ, Mourão CA, Pérez-Salas S, Richmond R, Dobzhansky T. Enzyme variability in the Drosophila willistoni group. I. Genetic differentiation among sibling species. Proceedings of the National Academy of Sciences of the United States of America. 67: 225-32. PMID 5272313 DOI: 10.1073/Pnas.67.1.225  0.573
1970 Ayala FJ. Teleological Explanations in Evolutionary Biology Philosophy of Science. 37: 1-15. DOI: 10.1086/288276  0.343
1969 Ayala FJ. Evolution of fitness. V. Rate of evolution of irradiated populations of drosophila. Proceedings of the National Academy of Sciences of the United States of America. 63: 790-793. PMID 5259763 DOI: 10.1073/Pnas.63.3.790  0.351
1969 Ayala FJ. Topics in Population Genetics. Bruce Wallace. Norton, New York, 1968. x + 486 pp., illus. $14 Science. 163: 1316-1316. DOI: 10.1126/Science.163.3873.1316  0.302
1968 Ayala FJ. Genotype, Environment, and Population Numbers Science. 162: 1453-1459. PMID 5700066 DOI: 10.1126/Science.162.3861.1453  0.304
1967 Ayala FJ. Evolution of fitness, 3. Improvement of fitness in irradiated populations of Drosophila serrata. Proceedings of the National Academy of Sciences of the United States of America. 58: 1919-1923. PMID 5237489 DOI: 10.1073/Pnas.58.5.1919  0.312
1967 Ayala FJ. Dynamics of Popualations. II. Factors Controlling Population Growth and Population Size in Drosophilia Pseudoobscura and in Drosophila Melanogaster Ecology. 48: 67-75. DOI: 10.2307/1933418  0.314
1966 Ayala FJ. Dynamics of Populations. I. Factors Controlling Population Growth and Population Size in Drosophila serrata The American Naturalist. 100: 333-344. DOI: 10.1086/282426  0.303
1965 Ayala FJ. Evolution of fitness in experimental populations of Drosophila serrata. Science. 150: 903-905. PMID 5835792 DOI: 10.1126/Science.150.3698.903  0.352
1965 Ayala FJ. SIBLING SPECIES OF THE DROSOPHILA SERRATA GROUP Evolution. 19: 538-545. DOI: 10.1111/j.1558-5646.1965.tb03329.x  0.301
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