| Year |
Citation |
Score |
| 2020 |
Hochstetter A, Vernekar R, Austin RH, Becker H, Beech JP, Fedosov DA, Gompper G, Kim SC, Smith JT, Stolovitzky G, Tegenfeldt JO, Wunsch BH, Zeming KK, Krüger T, Inglis DW. Deterministic Lateral Displacement: Challenges and Perspectives. Acs Nano. PMID 32844655 DOI: 10.1021/Acsnano.0C05186 |
0.308 |
|
| 2020 |
Yang M, Petralia F, Li Z, Li H, Ma W, Song X, Kim S, Lee H, Yu H, Lee B, Bae S, Heo E, Kaczmarczyk J, Stępniak P, Warchoł M, ... ... Stolovitzky G, et al. Crowdsourced Assessment of the of Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics. Cell Systems. PMID 32710834 DOI: 10.1016/J.Cels.2020.06.013 |
0.309 |
|
| 2019 |
Choobdar S, Ahsen ME, Crawford J, Tomasoni M, Fang T, Lamparter D, Lin J, Hescott B, Hu X, Mercer J, Natoli T, Narayan R, Subramanian A, Zhang JD, ... Stolovitzky G, et al. Assessment of network module identification across complex diseases. Nature Methods. 16: 843-852. PMID 31471613 DOI: 10.1038/S41592-019-0509-5 |
0.311 |
|
| 2017 |
Hansen J, Meretzky D, Woldesenbet S, Stolovitzky G, Iyengar R. A flexible ontology for inference of emergent whole cell function from relationships between subcellular processes. Scientific Reports. 7: 17689. PMID 29255142 DOI: 10.1038/S41598-017-16627-4 |
0.303 |
|
| 2017 |
Gönen M, Weir BA, Cowley GS, Vazquez F, Guan Y, Jaiswal A, Karasuyama M, Uzunangelov V, Wang T, Tsherniak A, Howell S, Marbach D, Hoff B, Norman TC, Airola A, ... ... Stolovitzky G, et al. A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines. Cell Systems. PMID 28988802 DOI: 10.1016/J.Cels.2017.09.004 |
0.316 |
|
| 2017 |
Keller A, Gerkin RC, Guan Y, Dhurandhar A, Turu G, Szalai B, Mainland JD, Ihara Y, Yu CW, Wolfinger R, Vens C, Schietgat L, De Grave K, Norel R, ... Stolovitzky G, et al. Predicting human olfactory perception from chemical features of odor molecules. Science (New York, N.Y.). PMID 28219971 DOI: 10.1126/Science.Aal2014 |
0.474 |
|
| 2016 |
Hill SM, Heiser LM, Cokelaer T, Unger M, Nesser NK, Carlin DE, Zhang Y, Sokolov A, Paull EO, Wong CK, Graim K, Bivol A, Wang H, Zhu F, Afsari B, ... ... Stolovitzky G, et al. Inferring causal molecular networks: empirical assessment through a community-based effort. Nature Methods. PMID 26901648 DOI: 10.1038/Nmeth.3773 |
0.327 |
|
| 2016 |
Chen X, Bashir A, Stolovitzky G, Losic B. Abstract LB-286: Dynamic alternative splicing correlates with drug synergy and induces novel gene regulatory networks in MCF7 Cancer Research. 76. DOI: 10.1158/1538-7445.Am2016-Lb-286 |
0.311 |
|
| 2016 |
Chen X, Stolovitzky G, Losic B. Abstract 790: Coupled dynamics of drug synergy, gene expression, and alternative splicing in combination therapies in breast cancer Cancer Research. 76: 790-790. DOI: 10.1158/1538-7445.Am2016-790 |
0.306 |
|
| 2015 |
Cokelaer T, Bansal M, Bare C, Bilal E, Bot BM, Chaibub Neto E, Eduati F, Gönen M, Hill SM, Hoff B, Karr JR, Küffner R, Menden MP, Meyer P, Norel R, ... ... Stolovitzky G, et al. DREAMTools: a Python package for scoring collaborative challenges. F1000research. 4: 1030. PMID 27134723 DOI: 10.12688/F1000Research.7118.2 |
0.306 |
|
| 2015 |
Prill RJ, Vogel R, Cecchi GA, Altan-Bonnet G, Stolovitzky G. Noise-driven causal inference in biomolecular networks. Plos One. 10: e0125777. PMID 26030907 DOI: 10.1371/Journal.Pone.0125777 |
0.506 |
|
| 2015 |
Prill RJ, Vogel R, Cecchi GA, Altan-Bonnet G, Stolovitzky G. Noise-driven causal inference in biomolecular networks Plos One. 10. DOI: 10.1371/journal.pone.0125777 |
0.392 |
|
| 2014 |
Meyer P, Cecchi G, Stolovitzky G. Spatial localization of the first and last enzymes effectively connects active metabolic pathways in bacteria. Bmc Systems Biology. 8: 131. PMID 25495800 DOI: 10.1186/S12918-014-0131-1 |
0.458 |
|
| 2014 |
Meyer P, Cokelaer T, Chandran D, Kim KH, Loh PR, Tucker G, Lipson M, Berger B, Kreutz C, Raue A, Steiert B, Timmer J, Bilal E, Dream Six and Seven Parameter Estimation Consortium, Sauro HM, ... Stolovitzky G, et al. Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach. Bmc Systems Biology. 8: 13. PMID 24507381 DOI: 10.1186/1752-0509-8-13 |
0.331 |
|
| 2013 |
Ansari S, Binder J, Boue S, Di Fabio A, Hayes W, Hoeng J, Iskandar A, Kleiman R, Norel R, O'Neel B, Peitsch MC, Poussin C, Pratt D, Rhrissorrakrai K, ... ... Stolovitzky G, et al. On Crowd-verification of Biological Networks. Bioinformatics and Biology Insights. 7: 307-25. PMID 24151423 DOI: 10.4137/Bbi.S12932 |
0.317 |
|
| 2013 |
Meyer P, Siwo G, Zeevi D, Sharon E, Norel R, Segal E, Stolovitzky G. Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach. Genome Research. 23: 1928-37. PMID 23950146 DOI: 10.1101/Gr.157420.113 |
0.316 |
|
| 2013 |
Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, Saez-Rodriguez J, Cokelaer T, Vedenko A, Talukder S, Bussemaker HJ, Morris QD, Bulyk ML, Stolovitzky G, et al. Evaluation of methods for modeling transcription factor sequence specificity. Nature Biotechnology. 31: 126-34. PMID 23354101 DOI: 10.1038/Nbt.2486 |
0.302 |
|
| 2012 |
Marbach D, Costello JC, Küffner R, Vega NM, Prill RJ, Camacho DM, Allison KR, Kellis M, Collins JJ, Stolovitzky G. Wisdom of crowds for robust gene network inference. Nature Methods. 9: 796-804. PMID 22796662 DOI: 10.1038/Nmeth.2016 |
0.335 |
|
| 2011 |
Prill RJ, Saez-Rodriguez J, Alexopoulos LG, Sorger PK, Stolovitzky G. Crowdsourcing network inference: the DREAM predictive signaling network challenge. Science Signaling. 4: mr7. PMID 21900204 DOI: 10.1126/Scisignal.2002212 |
0.326 |
|
| 2010 |
Fernández Slezak D, Suárez C, Cecchi GA, Marshall G, Stolovitzky G. When the optimal is not the best: parameter estimation in complex biological models. Plos One. 5: e13283. PMID 21049094 DOI: 10.1371/Journal.Pone.0013283 |
0.481 |
|
| 2010 |
Marbach D, Prill RJ, Schaffter T, Mattiussi C, Floreano D, Stolovitzky G. Revealing strengths and weaknesses of methods for gene network inference. Proceedings of the National Academy of Sciences of the United States of America. 107: 6286-91. PMID 20308593 DOI: 10.1073/Pnas.0913357107 |
0.323 |
|
| 2010 |
Prill RJ, Marbach D, Saez-Rodriguez J, Sorger PK, Alexopoulos LG, Xue X, Clarke ND, Altan-Bonnet G, Stolovitzky G. Towards a rigorous assessment of systems biology models: the DREAM3 challenges. Plos One. 5: e9202. PMID 20186320 DOI: 10.1371/Journal.Pone.0009202 |
0.355 |
|
| 2009 |
Stolovitzky G, Prill RJ, Califano A. Lessons from the DREAM2 Challenges. Annals of the New York Academy of Sciences. 1158: 159-95. PMID 19348640 DOI: 10.1111/J.1749-6632.2009.04497.X |
0.334 |
|
| 2008 |
Ma'ayan A, Cecchi GA, Wagner J, Rao AR, Iyengar R, Stolovitzky G. Ordered cyclic motifs contribute to dynamic stability in biological and engineered networks. Proceedings of the National Academy of Sciences of the United States of America. 105: 19235-40. PMID 19033453 DOI: 10.1073/Pnas.0805344105 |
0.487 |
|
| 2007 |
Stolovitzky G, Monroe D, Califano A. Dialogue on reverse-engineering assessment and methods: the DREAM of high-throughput pathway inference. Annals of the New York Academy of Sciences. 1115: 1-22. PMID 17925349 DOI: 10.1196/Annals.1407.021 |
0.319 |
|
| 2007 |
Margolin AA, Palomero T, Ferrando AA, Califano A, Stolovitzky G. ChIP-on-chip significance analysis reveals ubiquitous transcription factor binding Bmc Bioinformatics. 8. DOI: 10.1186/1471-2105-8-S8-S2 |
0.304 |
|
| 2005 |
Bhanot G, Alexe G, Levine AJ, Stolovitzky G. Robust diagnosis of non-Hodgkin lymphoma phenotypes validated on gene expression data from different laboratories. Genome Informatics. International Conference On Genome Informatics. 16: 233-44. PMID 16362926 DOI: 10.11234/Gi1990.16.233 |
0.309 |
|
| 2005 |
Basso K, Margolin AA, Stolovitzky G, Klein U, Dalla-Favera R, Califano A. Reverse engineering of regulatory networks in human B cells. Nature Genetics. 37: 382-90. PMID 15778709 DOI: 10.1038/Ng1532 |
0.316 |
|
| 2005 |
Rice JJ, Tu Y, Stolovitzky G. Reconstructing biological networks using conditional correlation analysis. Bioinformatics (Oxford, England). 21: 765-73. PMID 15486043 DOI: 10.1093/Bioinformatics/Bti064 |
0.303 |
|
| 1998 |
Shivashankar GV, Stolovitzky G, Libchaber A. Backscattering from a tethered bead as a probe of DNA flexibility Applied Physics Letters. 73: 291-293. DOI: 10.1063/1.121798 |
0.455 |
|
| 1998 |
Magnasco MO, Stolovitzky G. Feynman's ratchet and pawl Journal of Statistical Physics. 93: 615-632. DOI: 10.1023/B:Joss.0000033245.43421.14 |
0.545 |
|
| 1996 |
Stolovitzky G, Cecchi G. Efficiency of DNA replication in the polymerase chain reaction. Proceedings of the National Academy of Sciences of the United States of America. 93: 12947-52. PMID 8917524 DOI: 10.1073/Pnas.93.23.12947 |
0.488 |
|
| 1995 |
Faucheux LP, Stolovitzky G, Libchaber A. Periodic forcing of a Brownian particle. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 51: 5239-5250. PMID 9963256 DOI: 10.1103/Physreve.51.5239 |
0.498 |
|
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