Jeffery Cox - Publications

Molecular and Cell Biology University of California, Berkeley, Berkeley, CA 
Professor of Immunology and Pathogenesis

48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hoffpauir CT, Bell SL, West KO, Jing T, Wagner AR, Torres-Odio S, Cox JS, West AP, Li P, Patrick KL, Watson RO. TRIM14 Is a Key Regulator of the Type I IFN Response during Infection. Journal of Immunology (Baltimore, Md. : 1950). PMID 32404352 DOI: 10.4049/jimmunol.1901511  0.68
2018 Penn BH, Netter Z, Johnson JR, Von Dollen J, Jang GM, Johnson T, Ohol YM, Maher C, Bell SL, Geiger K, Golovkine G, Du X, Choi A, Parry T, Mohapatra BC, ... ... Cox JS, et al. An Mtb-Human Protein-Protein Interaction Map Identifies a Switch between Host Antiviral and Antibacterial Responses. Molecular Cell. 71: 637-648.e5. PMID 30118682 DOI: 10.1016/j.molcel.2018.07.010  0.48
2017 Mitchell G, Cheng MI, Chen C, Nguyen BN, Whiteley AT, Kianian S, Cox JS, Green DR, McDonald KL, Portnoy DA. Listeria monocytogenes triggers noncanonical autophagy upon phagocytosis, but avoids subsequent growth-restricting xenophagy. Proceedings of the National Academy of Sciences of the United States of America. PMID 29279409 DOI: 10.1073/pnas.1716055115  0.48
2017 Alumasa JN, Manzanillo PS, Peterson ND, Lundrigan T, Baughn AD, Cox JS, Keiler KC. Ribosome Rescue Inhibitors Kill Actively Growing and Non-replicating Persister Mycobacterium tuberculosis Cells. Acs Infectious Diseases. PMID 28762275 DOI: 10.1021/acsinfecdis.7b00028  0.68
2015 Mirrashidi KM, Elwell CA, Verschueren E, Johnson JR, Frando A, Von Dollen J, Rosenberg O, Gulbahce N, Jang G, Johnson T, Jäger S, Gopalakrishnan AM, Sherry J, Dunn JD, Olive A, ... ... Cox JS, et al. Global Mapping of the Inc-Human Interactome Reveals that Retromer Restricts Chlamydia Infection. Cell Host & Microbe. PMID 26118995 DOI: 10.1016/j.chom.2015.06.004  0.48
2015 Watson RO, Bell SL, MacDuff DA, Kimmey JM, Diner EJ, Olivas J, Vance RE, Stallings CL, Virgin HW, Cox JS. The Cytosolic Sensor cGAS Detects Mycobacterium tuberculosis DNA to Induce Type I Interferons and Activate Autophagy. Cell Host & Microbe. 17: 811-9. PMID 26048136 DOI: 10.1016/j.chom.2015.05.004  0.48
2015 Rosenberg OS, Dovala D, Li X, Connolly L, Bendebury A, Finer-Moore J, Holton J, Cheng Y, Stroud RM, Cox JS. Substrates Control Multimerization and Activation of the Multi-Domain ATPase Motor of Type VII Secretion. Cell. 161: 501-12. PMID 25865481 DOI: 10.1016/j.cell.2015.03.040  0.48
2014 Ekiert DC, Cox JS. Structure of a PE-PPE-EspG complex from Mycobacterium tuberculosis reveals molecular specificity of ESX protein secretion. Proceedings of the National Academy of Sciences of the United States of America. 111: 14758-63. PMID 25275011 DOI: 10.1073/pnas.1409345111  0.48
2014 Lohse MB, Rosenberg OS, Cox JS, Stroud RM, Finer-Moore JS, Johnson AD. Structure of a new DNA-binding domain which regulates pathogenesis in a wide variety of fungi. Proceedings of the National Academy of Sciences of the United States of America. 111: 10404-10. PMID 24994900 DOI: 10.1073/pnas.1410110111  0.48
2013 Zacharia VM, Manzanillo PS, Nair VR, Marciano DK, Kinch LN, Grishin NV, Cox JS, Shiloh MU. cor, a novel carbon monoxide resistance gene, is essential for Mycobacterium tuberculosis pathogenesis. Mbio. 4: e00721-13. PMID 24255121 DOI: 10.1128/mBio.00721-13  0.48
2013 Manzanillo PS, Ayres JS, Watson RO, Collins AC, Souza G, Rae CS, Schneider DS, Nakamura K, Shiloh MU, Cox JS. The ubiquitin ligase parkin mediates resistance to intracellular pathogens. Nature. 501: 512-6. PMID 24005326 DOI: 10.1038/nature12566  0.48
2013 Nguyen KD, Fentress SJ, Qiu Y, Yun K, Cox JS, Chawla A. Circadian gene Bmal1 regulates diurnal oscillations of Ly6C(hi) inflammatory monocytes. Science (New York, N.Y.). 341: 1483-8. PMID 23970558 DOI: 10.1126/science.1240636  0.48
2013 Eisele NA, Ruby T, Jacobson A, Manzanillo PS, Cox JS, Lam L, Mukundan L, Chawla A, Monack DM. Salmonella require the fatty acid regulator PPARδ for the establishment of a metabolic environment essential for long-term persistence. Cell Host & Microbe. 14: 171-82. PMID 23954156 DOI: 10.1016/j.chom.2013.07.010  0.48
2013 Stanley SA, Cox JS. Host-pathogen interactions during Mycobacterium tuberculosis infections. Current Topics in Microbiology and Immunology. 374: 211-41. PMID 23881288 DOI: 10.1007/82_2013_332  0.48
2012 Watson RO, Manzanillo PS, Cox JS. Extracellular M. tuberculosis DNA targets bacteria for autophagy by activating the host DNA-sensing pathway. Cell. 150: 803-15. PMID 22901810 DOI: 10.1016/j.cell.2012.06.040  0.68
2012 Manzanillo PS, Shiloh MU, Portnoy DA, Cox JS. Mycobacterium tuberculosis activates the DNA-dependent cytosolic surveillance pathway within macrophages. Cell Host & Microbe. 11: 469-80. PMID 22607800 DOI: 10.1016/j.chom.2012.03.007  0.48
2012 Gilmore SA, Schelle MW, Holsclaw CM, Leigh CD, Jain M, Cox JS, Leary JA, Bertozzi CR. Sulfolipid-1 biosynthesis restricts Mycobacterium tuberculosis growth in human macrophages. Acs Chemical Biology. 7: 863-70. PMID 22360425 DOI: 10.1021/cb200311s  0.48
2011 Rosenberg OS, Dovey C, Tempesta M, Robbins RA, Finer-Moore JS, Stroud RM, Cox JS. EspR, a key regulator of Mycobacterium tuberculosis virulence, adopts a unique dimeric structure among helix-turn-helix proteins Proceedings of the National Academy of Sciences of the United States of America. 108: 13450-13455. PMID 21795602 DOI: 10.1073/pnas.1110242108  0.48
2010 Ouellet H, Guan S, Johnston JB, Chow ED, Kells PM, Burlingame AL, Cox JS, Podust LM, de Montellano PR. Mycobacterium tuberculosis CYP125A1, a steroid C27 monooxygenase that detoxifies intracellularly generated cholest-4-en-3-one. Molecular Microbiology. 77: 730-42. PMID 20545858 DOI: 10.1111/j.1365-2958.2010.07243.x  0.48
2010 Ohol YM, Goetz DH, Chan K, Shiloh MU, Craik CS, Cox JS. Mycobacterium tuberculosis MycP1 protease plays a dual role in regulation of ESX-1 secretion and virulence. Cell Host & Microbe. 7: 210-20. PMID 20227664 DOI: 10.1016/j.chom.2010.02.006  0.48
2009 Bitter W, Houben EN, Bottai D, Brodin P, Brown EJ, Cox JS, Derbyshire K, Fortune SM, Gao LY, Liu J, Gey van Pittius NC, Pym AS, Rubin EJ, Sherman DR, Cole ST, et al. Systematic genetic nomenclature for type VII secretion systems. Plos Pathogens. 5: e1000507. PMID 19876390 DOI: 10.1371/journal.ppat.1000507  0.48
2009 Champion PA, Champion MM, Manzanillo P, Cox JS. ESX-1 secreted virulence factors are recognized by multiple cytosolic AAA ATPases in pathogenic mycobacteria. Molecular Microbiology. 73: 950-62. PMID 19682254 DOI: 10.1111/j.1365-2958.2009.06821.x  0.4
2008 Grundner C, Cox JS, Alber T. Protein tyrosine phosphatase PtpA is not required for Mycobacterium tuberculosis growth in mice. Fems Microbiology Letters. 287: 181-4. PMID 18752626 DOI: 10.1111/j.1574-6968.2008.01309.x  0.48
2008 Raghavan S, Manzanillo P, Chan K, Dovey C, Cox JS. Secreted transcription factor controls Mycobacterium tuberculosis virulence. Nature. 454: 717-21. PMID 18685700 DOI: 10.1038/nature07219  0.44
2008 Koo IC, Wang C, Raghavan S, Morisaki JH, Cox JS, Brown EJ. ESX-1-dependent cytolysis in lysosome secretion and inflammasome activation during mycobacterial infection. Cellular Microbiology. 10: 1866-78. PMID 18503637 DOI: 10.1111/j.1462-5822.2008.01177.x  0.44
2008 Shiloh MU, Manzanillo P, Cox JS. Mycobacterium tuberculosis senses host-derived carbon monoxide during macrophage infection. Cell Host & Microbe. 3: 323-30. PMID 18474359 DOI: 10.1016/j.chom.2008.03.007  0.48
2008 Leber JH, Crimmins GT, Raghavan S, Meyer-Morse NP, Cox JS, Portnoy DA. Distinct TLR- and NLR-mediated transcriptional responses to an intracellular pathogen. Plos Pathogens. 4: e6. PMID 18193943 DOI: 10.1371/journal.ppat.0040006  0.48
2007 Kumar P, Schelle MW, Jain M, Lin FL, Petzold CJ, Leavell MD, Leary JA, Cox JS, Bertozzi CR. PapA1 and PapA2 are acyltransferases essential for the biosynthesis of the Mycobacterium tuberculosis virulence factor sulfolipid-1. Proceedings of the National Academy of Sciences of the United States of America. 104: 11221-6. PMID 17592143 DOI: 10.1073/pnas.0611649104  0.48
2007 Voehringer D, Stanley SA, Cox JS, Completo GC, Lowary TL, Locksley RM. Nippostrongylus brasiliensis: identification of intelectin-1 and -2 as Stat6-dependent genes expressed in lung and intestine during infection. Experimental Parasitology. 116: 458-66. PMID 17420014 DOI: 10.1016/j.exppara.2007.02.015  0.48
2007 Greenstein AE, MacGurn JA, Baer CE, Falick AM, Cox JS, Alber T. M. tuberculosis Ser/Thr protein kinase D phosphorylates an anti-anti-sigma factor homolog. Plos Pathogens. 3: e49. PMID 17411339 DOI: 10.1371/journal.ppat.0030049  0.48
2007 Jain M, Petzold CJ, Schelle MW, Leavell MD, Mougous JD, Bertozzi CR, Leary JA, Cox JS. Lipidomics reveals control of Mycobacterium tuberculosis virulence lipids via metabolic coupling. Proceedings of the National Academy of Sciences of the United States of America. 104: 5133-8. PMID 17360366 DOI: 10.1073/pnas.0610634104  0.48
2007 Stanley SA, Johndrow JE, Manzanillo P, Cox JS. The Type I IFN response to infection with Mycobacterium tuberculosis requires ESX-1-mediated secretion and contributes to pathogenesis. Journal of Immunology (Baltimore, Md. : 1950). 178: 3143-52. PMID 17312162  0.48
2006 Champion PA, Stanley SA, Champion MM, Brown EJ, Cox JS. C-terminal signal sequence promotes virulence factor secretion in Mycobacterium tuberculosis. Science (New York, N.Y.). 313: 1632-6. PMID 16973880 DOI: 10.1126/science.1131167  0.48
2006 Mougous JD, Senaratne RH, Petzold CJ, Jain M, Lee DH, Schelle MW, Leavell MD, Cox JS, Leary JA, Riley LW, Bertozzi CR. A sulfated metabolite produced by stf3 negatively regulates the virulence of Mycobacterium tuberculosis. Proceedings of the National Academy of Sciences of the United States of America. 103: 4258-63. PMID 16537518 DOI: 10.1073/pnas.0510861103  0.48
2005 MacGurn JA, Raghavan S, Stanley SA, Cox JS. A non-RD1 gene cluster is required for Snm secretion in Mycobacterium tuberculosis. Molecular Microbiology. 57: 1653-63. PMID 16135231 DOI: 10.1111/j.1365-2958.2005.04800.x  0.48
2004 Hisert KB, Kirksey MA, Gomez JE, Sousa AO, Cox JS, Jacobs WR, Nathan CF, McKinney JD. Identification of Mycobacterium tuberculosis counterimmune (cim) mutants in immunodeficient mice by differential screening. Infection and Immunity. 72: 5315-21. PMID 15322028 DOI: 10.1128/IAI.72.9.5315-5321.2004  0.48
2004 Ng VH, Cox JS, Sousa AO, MacMicking JD, McKinney JD. Role of KatG catalase-peroxidase in mycobacterial pathogenesis: countering the phagocyte oxidative burst. Molecular Microbiology. 52: 1291-302. PMID 15165233 DOI: 10.1111/j.1365-2958.2004.04078.x  0.48
2004 Shamu CE, Cox JS, Walter P. The unfolded-protein-response pathway in yeast. Trends in Cell Biology. 4: 56-60. PMID 14731868 DOI: 10.1016/0962-8924(94)90011-6  0.56
2003 Stanley SA, Raghavan S, Hwang WW, Cox JS. Acute infection and macrophage subversion by Mycobacterium tuberculosis require a specialized secretion system. Proceedings of the National Academy of Sciences of the United States of America. 100: 13001-6. PMID 14557536 DOI: 10.1073/pnas.2235593100  0.48
2003 Gao LY, Laval F, Lawson EH, Groger RK, Woodruff A, Morisaki JH, Cox JS, Daffe M, Brown EJ. Requirement for kasB in Mycobacterium mycolic acid biosynthesis, cell wall impermeability and intracellular survival: implications for therapy. Molecular Microbiology. 49: 1547-63. PMID 12950920 DOI: 10.1046/j.1365-2958.2003.03667.x  0.48
2003 Converse SE, Mougous JD, Leavell MD, Leary JA, Bertozzi CR, Cox JS. MmpL8 is required for sulfolipid-1 biosynthesis and Mycobacterium tuberculosis virulence. Proceedings of the National Academy of Sciences of the United States of America. 100: 6121-6. PMID 12724526 DOI: 10.1073/pnas.1030024100  0.48
2003 Gao LY, Groger R, Cox JS, Beverley SM, Lawson EH, Brown EJ. Transposon mutagenesis of Mycobacterium marinum identifies a locus linking pigmentation and intracellular survival. Infection and Immunity. 71: 922-9. PMID 12540574 DOI: 10.1128/IAI.71.2.922-929.2003  0.48
2002 Cox JS. The Bugs amongst Us Cell. 111: 448-450. DOI: 10.1016/S0092-8674(02)01120-0  0.4
2000 Glickman MS, Cox JS, Jacobs WR. A novel mycolic acid cyclopropane synthetase is required for cording, persistence, and virulence of Mycobacterium tuberculosis. Molecular Cell. 5: 717-27. PMID 10882107 DOI: 10.1016/S1097-2765(00)80250-6  0.52
1997 Cox JS, Chapman RE, Walter P. The unfolded protein response coordinates the production of endoplasmic reticulum protein and endoplasmic reticulum membrane. Molecular Biology of the Cell. 8: 1805-14. PMID 9307975 DOI: 10.1091/mbc.8.9.1805  0.56
1996 Sidrauski C, Cox JS, Walter P. tRNA ligase is required for regulated mRNA splicing in the unfolded protein response. Cell. 87: 405-13. PMID 8898194 DOI: 10.1016/S0092-8674(00)81361-6  0.88
1996 Cox JS, Walter P. A novel mechanism for regulating activity of a transcription factor that controls the unfolded protein response. Cell. 87: 391-404. PMID 8898193 DOI: 10.1016/S0092-8674(00)81360-4  0.84
1993 Cox JS, Shamu CE, Walter P. Transcriptional induction of genes encoding endoplasmic reticulum resident proteins requires a transmembrane protein kinase. Cell. 73: 1197-206. PMID 8513503 DOI: 10.1016/0092-8674(93)90648-A  0.6
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