Xavier Darzacq - Publications

Molecular and Cell Biology University of California, Berkeley, Berkeley, CA 
Transcription regulation during cellular differentiation

25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Graham TGW, Dugast-Darzacq C, Dailey GM, Darzacq X, Tjian R. Simple, Inexpensive RNA Isolation and One-Step RT-qPCR Methods for SARS-CoV-2 Detection and General Use. Current Protocols. 1: e130. PMID 33905620 DOI: 10.1002/cpz1.130  0.72
2021 Graham TGW, Dugast-Darzacq C, Dailey GM, Nguyenla XH, Van Dis E, Esbin MN, Abidi A, Stanley SA, Darzacq X, Tjian R. Open-source RNA extraction and RT-qPCR methods for SARS-CoV-2 detection. Plos One. 16: e0246647. PMID 33534838 DOI: 10.1371/journal.pone.0246647  0.72
2020 Cattoglio C, Darzacq X, Tjian R, Hansen AS. Estimating Cellular Abundances of Halo-tagged Proteins in Live Mammalian Cells by Flow Cytometry. Bio-Protocol. 10: e3527. PMID 33654751 DOI: 10.21769/BioProtoc.3527  0.72
2020 Cattoglio C, Pustova I, Darzacq X, Tjian R, Hansen AS. Assessing Self-interaction of Mammalian Nuclear Proteins by Co-immunoprecipitation. Bio-Protocol. 10: e3526. PMID 33654750 DOI: 10.21769/BioProtoc.3526  0.72
2020 Costantino L, Hsieh TS, Lamothe R, Darzacq X, Koshland D. Cohesin residency determines chromatin loop patterns. Elife. 9. PMID 33170773 DOI: 10.7554/eLife.59889  0.72
2020 Esbin MN, Whitney ON, Chong S, Maurer A, Darzacq X, Tjian R. Overcoming the bottleneck to widespread testing: A rapid review of nucleic acid testing approaches for COVID-19 detection. Rna (New York, N.Y.). PMID 32358057 DOI: 10.1261/Rna.076232.120  0.72
2020 Hsieh TS, Cattoglio C, Slobodyanyuk E, Hansen AS, Rando OJ, Tjian R, Darzacq X. Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding. Molecular Cell. PMID 32213323 DOI: 10.1016/J.Molcel.2020.03.002  0.72
2019 Hansen AS, Amitai A, Cattoglio C, Tjian R, Darzacq X. Guided nuclear exploration increases CTCF target search efficiency. Nature Chemical Biology. PMID 31792445 DOI: 10.1038/S41589-019-0422-3  0.72
2019 McSwiggen DT, Mir M, Darzacq X, Tjian R. Evaluating phase separation in live cells: diagnosis, caveats, and functional consequences. Genes & Development. PMID 31594803 DOI: 10.1101/Gad.331520.119  0.72
2019 Hansen AS, Hsieh TS, Cattoglio C, Pustova I, Saldaña-Meyer R, Reinberg D, Darzacq X, Tjian R. Distinct Classes of Chromatin Loops Revealed by Deletion of an RNA-Binding Region in CTCF. Molecular Cell. PMID 31522987 DOI: 10.1016/J.Molcel.2019.07.039  0.72
2019 Cattoglio C, Pustova I, Walther N, Ho JJ, Hantsche-Grininger M, Inouye CJ, Hossain MJ, Dailey GM, Ellenberg J, Darzacq X, Tjian R, Hansen AS. Determining cellular CTCF and cohesin abundances to constrain 3D genome models. Elife. 8. PMID 31205001 DOI: 10.7554/Elife.40164  0.72
2019 McSwiggen DT, Hansen AS, Teves SS, Marie-Nelly H, Hao Y, Heckert AB, Umemoto KK, Dugast-Darzacq C, Tjian R, Darzacq X. Evidence for DNA-mediated nuclear compartmentalization distinct from phase separation. Elife. 8. PMID 31038454 DOI: 10.7554/Elife.47098  0.72
2019 Hollerer I, Barker JC, Jorgensen V, Tresenrider A, Dugast-Darzacq C, Chan LY, Darzacq X, Tjian R, Ünal E, Brar GA. Evidence for an Integrated Gene Repression Mechanism Based on mRNA Isoform Toggling in Human Cells. G3 (Bethesda, Md.). PMID 30723103 DOI: 10.1534/G3.118.200802  0.72
2019 Oomen ME, Hansen AS, Liu Y, Darzacq X, Dekker J. CTCF sites display cell cycle-dependent dynamics in factor binding and nucleosome positioning. Genome Research. PMID 30655336 DOI: 10.1101/gr.241547.118  0.72
2018 Boehning M, Dugast-Darzacq C, Rankovic M, Hansen AS, Yu T, Marie-Nelly H, McSwiggen DT, Kokic G, Dailey GM, Cramer P, Darzacq X, Zweckstetter M. RNA polymerase II clustering through carboxy-terminal domain phase separation. Nature Structural & Molecular Biology. PMID 30127355 DOI: 10.1038/s41594-018-0112-y  0.72
2018 Mir M, Reimer A, Stadler M, Tangara A, Hansen AS, Hockemeyer D, Eisen MB, Garcia H, Darzacq X. Single Molecule Imaging in Live Embryos Using Lattice Light-Sheet Microscopy. Methods in Molecular Biology (Clifton, N.J.). 1814: 541-559. PMID 29956254 DOI: 10.1007/978-1-4939-8591-3_32  0.72
2018 Teves SS, An L, Bhargava-Shah A, Xie L, Darzacq X, Tjian R. A stable mode of bookmarking by TBP recruits RNA Polymerase II to mitotic chromosomes. Elife. 7. PMID 29939130 DOI: 10.7554/Elife.35621  0.72
2018 Chong S, Dugast-Darzacq C, Liu Z, Dong P, Dailey GM, Cattoglio C, Heckert A, Banala S, Lavis L, Darzacq X, Tjian R. Imaging dynamic and selective low-complexity domain interactions that control gene transcription. Science (New York, N.Y.). PMID 29930090 DOI: 10.1126/Science.Aar2555  0.72
2018 Lu H, Yu D, Hansen AS, Ganguly S, Liu R, Heckert A, Darzacq X, Zhou Q. Phase-separation mechanism for C-terminal hyperphosphorylation of RNA polymerase II. Nature. PMID 29849146 DOI: 10.1038/S41586-018-0174-3  0.72
2018 Hansen AS, Woringer M, Grimm JB, Lavis LD, Tjian R, Darzacq X. Robust model-based analysis of single-particle tracking experiments with Spot-On. Elife. 7. PMID 29300163 DOI: 10.7554/Elife.33125  0.72
2017 Hansen AS, Cattoglio C, Darzacq X, Tjian R. Recent evidence that TADs and chromatin loops are dynamic structures. Nucleus (Austin, Tex.). 0. PMID 29077530 DOI: 10.1080/19491034.2017.1389365  0.72
2017 Xie L, Torigoe SE, Xiao J, Mai DH, Li L, Davis FP, Dong P, Marie-Nelly H, Grimm J, Lavis L, Darzacq X, Cattoglio C, Liu Z, Tjian R. A dynamic interplay of enhancer elements regulates Klf4 expression in naïve pluripotency. Genes & Development. 31: 1795-1808. PMID 28982762 DOI: 10.1101/Gad.303321.117  0.72
2017 Hansen AS, Pustova I, Cattoglio C, Tjian R, Darzacq X. CTCF and cohesin regulate chromatin loop stability with distinct dynamics. Elife. 6. PMID 28467304 DOI: 10.7554/eLife.25776  0.72
2016 Teves SS, An L, Hansen AS, Xie L, Darzacq X, Tjian R. A dynamic mode of mitotic bookmarking by transcription factors. Elife. 5. PMID 27855781 DOI: 10.7554/Elife.22280  0.72
2016 Abrahamsson S, Ilic R, Wisniewski J, Mehl B, Yu L, Chen L, Davanco M, Oudjedi L, Fiche JB, Hajj B, Jin X, Pulupa J, Cho C, Mir M, El Beheiry M, ... Darzacq X, et al. Multifocus microscopy with precise color multi-phase diffractive optics applied in functional neuronal imaging. Biomedical Optics Express. 7: 855-69. PMID 27231594 DOI: 10.1364/Boe.7.000855  0.56
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