| Year |
Citation |
Score |
| 2024 |
Graham TGW, Ferrie JJ, Dailey GM, Tjian R, Darzacq X. Correction: Detecting molecular interactions in live-cell single-molecule imaging with proximity-assisted photoactivation (PAPA). Elife. 13. PMID 38375862 DOI: 10.7554/eLife.97099 |
0.474 |
|
| 2023 |
Ferrie JJ, Karr JP, Graham TGW, Dailey GM, Zhang G, Tjian R, Darzacq X. p300 is an obligate integrator of combinatorial transcription factor inputs. Molecular Cell. PMID 38159566 DOI: 10.1016/j.molcel.2023.12.004 |
0.566 |
|
| 2023 |
Zhou J, Cattoglio C, Shao Y, Tirumala HP, Vetralla C, Bajikar SS, Li Y, Chen H, Wang Q, Wu Z, Tang B, Zahabiyon M, Bajic A, Meng X, Ferrie JJ, ... ... Darzacq X, et al. A novel pathogenic mutation of MeCP2 impairs chromatin association independent of protein levels. Genes & Development. PMID 37890975 DOI: 10.1101/gad.350733.123 |
0.44 |
|
| 2023 |
Maurer AC, Benyamini B, Fan VB, Whitney ON, Dailey GM, Darzacq X, Weitzman MD, Tjian R. Double-Strand Break Repair Pathways Differentially Affect Processing and Transduction by Dual AAV Vectors. Biorxiv : the Preprint Server For Biology. PMID 37790316 DOI: 10.1101/2023.09.19.558438 |
0.445 |
|
| 2023 |
Dahal L, Graham TG, Dailey GM, Heckert A, Tjian R, Darzacq X. Surprising Features of Nuclear Receptor Interaction Networks Revealed by Live Cell Single Molecule Imaging. Biorxiv : the Preprint Server For Biology. PMID 37745337 DOI: 10.1101/2023.09.16.558083 |
0.529 |
|
| 2023 |
Ferrie JJ, Karr JP, Graham TGW, Dailey GM, Zhang G, Tjian R, Darzacq X. p300 Is an Obligate Integrator of Combinatorial Transcription Factor Inputs. Biorxiv : the Preprint Server For Biology. PMID 37292840 DOI: 10.1101/2023.05.18.541220 |
0.567 |
|
| 2023 |
Dahal L, Walther N, Tjian R, Darzacq X, Graham TGW. Single-molecule tracking (SMT): a window into live-cell transcription biochemistry. Biochemical Society Transactions. PMID 36876879 DOI: 10.1042/BST20221242 |
0.527 |
|
| 2022 |
Hsieh TS, Cattoglio C, Slobodyanyuk E, Hansen AS, Darzacq X, Tjian R. Enhancer-promoter interactions and transcription are largely maintained upon acute loss of CTCF, cohesin, WAPL or YY1. Nature Genetics. 54: 1919-1932. PMID 36471071 DOI: 10.1038/s41588-022-01223-8 |
0.792 |
|
| 2022 |
Chen Y, Cattoglio C, Dailey GM, Zhu Q, Tjian R, Darzacq X. Mechanisms governing target search and binding dynamics of hypoxia-inducible factors. Elife. 11. PMID 36322456 DOI: 10.7554/eLife.75064 |
0.545 |
|
| 2022 |
Ferrie JJ, Karr JP, Tjian R, Darzacq X. "Structure"-function relationships in eukaryotic transcription factors: The role of intrinsically disordered regions in gene regulation. Molecular Cell. 82: 3970-3984. PMID 36265487 DOI: 10.1016/j.molcel.2022.09.021 |
0.541 |
|
| 2022 |
Graham TGW, Ferrie JJ, Dailey GM, Tjian R, Darzacq X. Detecting molecular interactions in live-cell single-molecule imaging with proximity-assisted photoactivation (PAPA). Elife. 11. PMID 35976226 DOI: 10.7554/eLife.76870 |
0.515 |
|
| 2022 |
Chong S, Graham TGW, Dugast-Darzacq C, Dailey GM, Darzacq X, Tjian R. Tuning levels of low-complexity domain interactions to modulate endogenous oncogenic transcription. Molecular Cell. PMID 35483357 DOI: 10.1016/j.molcel.2022.04.007 |
0.558 |
|
| 2022 |
Karr JP, Ferrie JJ, Tjian R, Darzacq X. The transcription factor activity gradient (TAG) model: contemplating a contact-independent mechanism for enhancer-promoter communication. Genes & Development. 36: 7-16. PMID 34969825 DOI: 10.1101/gad.349160.121 |
0.497 |
|
| 2022 |
Darzacq X, Tjian R. Weak multivalent biomolecular interactions: a strength versus numbers tug of war with implications for phase partitioning. Rna (New York, N.Y.). 28: 48-51. PMID 34772790 DOI: 10.1261/rna.079004.121 |
0.526 |
|
| 2021 |
Herbst DA, Esbin MN, Louder RK, Dugast-Darzacq C, Dailey GM, Fang Q, Darzacq X, Tjian R, Nogales E. Structure of the human SAGA coactivator complex. Nature Structural & Molecular Biology. PMID 34811519 DOI: 10.1038/s41594-021-00682-7 |
0.467 |
|
| 2021 |
Graham TGW, Dugast-Darzacq C, Dailey GM, Darzacq X, Tjian R. Simple, Inexpensive RNA Isolation and One-Step RT-qPCR Methods for SARS-CoV-2 Detection and General Use. Current Protocols. 1: e130. PMID 33905620 DOI: 10.1002/cpz1.130 |
0.492 |
|
| 2021 |
Sawicka A, Villamil G, Lidschreiber M, Darzacq X, Dugast-Darzacq C, Schwalb B, Cramer P. Transcription activation depends on the length of the RNA polymerase II C-terminal domain. The Embo Journal. e107015. PMID 33555055 DOI: 10.15252/embj.2020107015 |
0.331 |
|
| 2021 |
Graham TGW, Dugast-Darzacq C, Dailey GM, Nguyenla XH, Van Dis E, Esbin MN, Abidi A, Stanley SA, Darzacq X, Tjian R. Open-source RNA extraction and RT-qPCR methods for SARS-CoV-2 detection. Plos One. 16: e0246647. PMID 33534838 DOI: 10.1371/journal.pone.0246647 |
0.466 |
|
| 2020 |
Cattoglio C, Darzacq X, Tjian R, Hansen AS. Estimating Cellular Abundances of Halo-tagged Proteins in Live Mammalian Cells by Flow Cytometry. Bio-Protocol. 10: e3527. PMID 33654751 DOI: 10.21769/BioProtoc.3527 |
0.468 |
|
| 2020 |
Cattoglio C, Pustova I, Darzacq X, Tjian R, Hansen AS. Assessing Self-interaction of Mammalian Nuclear Proteins by Co-immunoprecipitation. Bio-Protocol. 10: e3526. PMID 33654750 DOI: 10.21769/BioProtoc.3526 |
0.471 |
|
| 2020 |
Costantino L, Hsieh TS, Lamothe R, Darzacq X, Koshland D. Cohesin residency determines chromatin loop patterns. Elife. 9. PMID 33170773 DOI: 10.7554/eLife.59889 |
0.77 |
|
| 2020 |
Wang AS, Chen LC, Wu RA, Hao Y, McSwiggen DT, Heckert AB, Richardson CD, Gowen BG, Kazane KR, Vu JT, Wyman SK, Shin JJ, Darzacq X, Walter JC, Corn JE. The Histone Chaperone FACT Induces Cas9 Multi-turnover Behavior and Modifies Genome Manipulation in Human Cells. Molecular Cell. PMID 32603710 DOI: 10.1016/J.Molcel.2020.06.014 |
0.336 |
|
| 2020 |
Esbin MN, Whitney ON, Chong S, Maurer A, Darzacq X, Tjian R. Overcoming the bottleneck to widespread testing: A rapid review of nucleic acid testing approaches for COVID-19 detection. Rna (New York, N.Y.). PMID 32358057 DOI: 10.1261/Rna.076232.120 |
0.402 |
|
| 2020 |
Hsieh TS, Cattoglio C, Slobodyanyuk E, Hansen AS, Rando OJ, Tjian R, Darzacq X. Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding. Molecular Cell. PMID 32213323 DOI: 10.1016/J.Molcel.2020.03.002 |
0.774 |
|
| 2019 |
Hansen AS, Amitai A, Cattoglio C, Tjian R, Darzacq X. Guided nuclear exploration increases CTCF target search efficiency. Nature Chemical Biology. PMID 31792445 DOI: 10.1038/S41589-019-0422-3 |
0.506 |
|
| 2019 |
McSwiggen DT, Mir M, Darzacq X, Tjian R. Evaluating phase separation in live cells: diagnosis, caveats, and functional consequences. Genes & Development. PMID 31594803 DOI: 10.1101/Gad.331520.119 |
0.712 |
|
| 2019 |
Parker MW, Bell M, Mir M, Kao JA, Darzacq X, Botchan MR, Berger JM. A new class of disordered elements controls DNA replication through initiator self-assembly. Elife. 8. PMID 31560342 DOI: 10.7554/Elife.48562 |
0.666 |
|
| 2019 |
Hansen AS, Hsieh TS, Cattoglio C, Pustova I, Saldaña-Meyer R, Reinberg D, Darzacq X, Tjian R. Distinct Classes of Chromatin Loops Revealed by Deletion of an RNA-Binding Region in CTCF. Molecular Cell. PMID 31522987 DOI: 10.1016/J.Molcel.2019.07.039 |
0.792 |
|
| 2019 |
Cattoglio C, Pustova I, Walther N, Ho JJ, Hantsche-Grininger M, Inouye CJ, Hossain MJ, Dailey GM, Ellenberg J, Darzacq X, Tjian R, Hansen AS. Determining cellular CTCF and cohesin abundances to constrain 3D genome models. Elife. 8. PMID 31205001 DOI: 10.7554/Elife.40164 |
0.525 |
|
| 2019 |
McSwiggen DT, Hansen AS, Teves SS, Marie-Nelly H, Hao Y, Heckert AB, Umemoto KK, Dugast-Darzacq C, Tjian R, Darzacq X. Evidence for DNA-mediated nuclear compartmentalization distinct from phase separation. Elife. 8. PMID 31038454 DOI: 10.7554/Elife.47098 |
0.535 |
|
| 2019 |
Hollerer I, Barker JC, Jorgensen V, Tresenrider A, Dugast-Darzacq C, Chan LY, Darzacq X, Tjian R, Ünal E, Brar GA. Evidence for an Integrated Gene Repression Mechanism Based on mRNA Isoform Toggling in Human Cells. G3 (Bethesda, Md.). PMID 30723103 DOI: 10.1534/G3.118.200802 |
0.55 |
|
| 2018 |
Mir M, Stadler MR, Ortiz SA, Hannon CE, Harrison MM, Darzacq X, Eisen MB. Dynamic multifactor hubs interact transiently with sites of active transcription in embryos. Elife. 7. PMID 30589412 DOI: 10.7554/Elife.40497 |
0.717 |
|
| 2018 |
Mir M, Reimer A, Stadler M, Tangara A, Hansen AS, Hockemeyer D, Eisen MB, Garcia H, Darzacq X. Single Molecule Imaging in Live Embryos Using Lattice Light-Sheet Microscopy. Methods in Molecular Biology (Clifton, N.J.). 1814: 541-559. PMID 29956254 DOI: 10.1007/978-1-4939-8591-3_32 |
0.688 |
|
| 2018 |
Teves SS, An L, Bhargava-Shah A, Xie L, Darzacq X, Tjian R. A stable mode of bookmarking by TBP recruits RNA Polymerase II to mitotic chromosomes. Elife. 7. PMID 29939130 DOI: 10.7554/Elife.35621 |
0.599 |
|
| 2018 |
Chong S, Dugast-Darzacq C, Liu Z, Dong P, Dailey GM, Cattoglio C, Heckert A, Banala S, Lavis L, Darzacq X, Tjian R. Imaging dynamic and selective low-complexity domain interactions that control gene transcription. Science (New York, N.Y.). PMID 29930090 DOI: 10.1126/Science.Aar2555 |
0.594 |
|
| 2018 |
Hansen AS, Woringer M, Grimm JB, Lavis LD, Tjian R, Darzacq X. Robust model-based analysis of single-particle tracking experiments with Spot-On. Elife. 7. PMID 29300163 DOI: 10.7554/Elife.33125 |
0.459 |
|
| 2017 |
Hansen AS, Cattoglio C, Darzacq X, Tjian R. Recent evidence that TADs and chromatin loops are dynamic structures. Nucleus (Austin, Tex.). 0. PMID 29077530 DOI: 10.1080/19491034.2017.1389365 |
0.536 |
|
| 2017 |
Xie L, Torigoe SE, Xiao J, Mai DH, Li L, Davis FP, Dong P, Marie-Nelly H, Grimm J, Lavis L, Darzacq X, Cattoglio C, Liu Z, Tjian R. A dynamic interplay of enhancer elements regulates Klf4 expression in naïve pluripotency. Genes & Development. 31: 1795-1808. PMID 28982762 DOI: 10.1101/Gad.303321.117 |
0.568 |
|
| 2017 |
Mir M, Reimer A, Haines JE, Li XY, Stadler M, Garcia H, Eisen MB, Darzacq X. Dense Bicoid hubs accentuate binding along the morphogen gradient. Genes & Development. 31: 1784-1794. PMID 28982761 DOI: 10.1101/Gad.305078.117 |
0.695 |
|
| 2017 |
Woringer M, Darzacq X, Zimmer C, Mir M. Faster and less phototoxic 3D fluorescence microscopy using a versatile compressed sensing scheme. Optics Express. 25: 13668-13683. PMID 28788909 DOI: 10.1364/OE.25.013668 |
0.624 |
|
| 2017 |
Strom AR, Emelyanov AV, Mir M, Fyodorov DV, Darzacq X, Karpen GH. Phase separation drives heterochromatin domain formation. Nature. PMID 28636597 DOI: 10.1016/J.Bpj.2017.11.2460 |
0.696 |
|
| 2017 |
Wichner SM, Mann VR, Powers AS, Segal MA, Mir M, Bandaria JN, DeWitt MA, Darzacq X, Yildiz A, Cohen BE. Covalent Protein Labeling and Improved Single Molecule Optical Properties of Aqueous CdSe/CdS Quantum Dots. Acs Nano. PMID 28618223 DOI: 10.1021/Acsnano.7B01470 |
0.638 |
|
| 2017 |
Hansen AS, Pustova I, Cattoglio C, Tjian R, Darzacq X. CTCF and cohesin regulate chromatin loop stability with distinct dynamics. Elife. 6. PMID 28467304 DOI: 10.7554/eLife.25776 |
0.548 |
|
| 2017 |
Qin P, Parlak M, Kuscu C, Bandaria J, Mir M, Szlachta K, Singh R, Darzacq X, Yildiz A, Adli M. Live cell imaging of low- and non-repetitive chromosome loci using CRISPR-Cas9. Nature Communications. 8: 14725. PMID 28290446 DOI: 10.1038/Ncomms14725 |
0.715 |
|
| 2016 |
Teves SS, An L, Hansen AS, Xie L, Darzacq X, Tjian R. A dynamic mode of mitotic bookmarking by transcription factors. Elife. 5. PMID 27855781 DOI: 10.7554/Elife.22280 |
0.541 |
|
| 2016 |
Abrahamsson S, Ilic R, Wisniewski J, Mehl B, Yu L, Chen L, Davanco M, Oudjedi L, Fiche JB, Hajj B, Jin X, Pulupa J, Cho C, Mir M, El Beheiry M, ... Darzacq X, et al. Multifocus microscopy with precise color multi-phase diffractive optics applied in functional neuronal imaging. Biomedical Optics Express. 7: 855-69. PMID 27231594 DOI: 10.1364/Boe.7.000855 |
0.643 |
|
| 2016 |
Coleman RA, Liu Z, Darzacq X, Tjian R, Singer RH, Lionnet T. Imaging Transcription: Past, Present, and Future. Cold Spring Harbor Symposia On Quantitative Biology. PMID 26763984 DOI: 10.1101/Sqb.2015.80.027201 |
0.668 |
|
| 2016 |
Abrahamsson S, Ilic R, Wisniewski J, Mehl B, Yu L, Chen L, Davanco M, Oudjedi L, Fiche JB, Hajj B, Jin X, Pulupa J, Cho C, Mir M, El Beheiry M, ... Darzacq X, et al. Multifocus microscopy with precise color multiphase diffractive optics applied in functional neuronal imaging Biomedical Optics Express. 7: 855-869. DOI: 10.1364/BOE.7.000855 |
0.639 |
|
| 2014 |
Senecal A, Munsky B, Proux F, Ly N, Braye FE, Zimmer C, Mueller F, Darzacq X. Transcription factors modulate c-Fos transcriptional bursts. Cell Reports. 8: 75-83. PMID 24981864 DOI: 10.1016/J.Celrep.2014.05.053 |
0.321 |
|
| 2014 |
Izeddin I, Récamier V, Bosanac L, Cissé II, Boudarene L, Dugast-Darzacq C, Proux F, Bénichou O, Voituriez R, Bensaude O, Dahan M, Darzacq X. Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus. Elife. 3. PMID 24925319 DOI: 10.7554/Elife.02230 |
0.323 |
|
| 2013 |
Mouaikel J, Causse SZ, Rougemaille M, Daubenton-Carafa Y, Blugeon C, Lemoine S, Devaux F, Darzacq X, Libri D. High-frequency promoter firing links THO complex function to heavy chromatin formation. Cell Reports. 5: 1082-94. PMID 24210826 DOI: 10.1016/j.celrep.2013.10.013 |
0.32 |
|
| 2012 |
Normanno D, Dahan M, Darzacq X. Intra-nuclear mobility and target search mechanisms of transcription factors: a single-molecule perspective on gene expression. Biochimica Et Biophysica Acta. 1819: 482-93. PMID 22342464 DOI: 10.1016/j.bbagrm.2012.02.001 |
0.351 |
|
| 2012 |
Cisse II, Izeddin I, Causse S, El Beheiry M, Dugast-Darzacq C, Muresan L, Recamier V, Dahan M, Darzacq X. From Single-Molecule Interactions to Population-Level Dynamics: Understanding the Complex Organization of RNA Pol II in the Nucleus of Living Cells Biophysical Journal. 102: 475a. DOI: 10.1016/J.Bpj.2011.11.2607 |
0.313 |
|
| 2012 |
Izeddin I, Récamier V, Cissé II, Bosanac L, Boudarene L, Proux F, Dugast-Darzacq C, Bénichou O, Voituriez R, Dahan M, Darzacq X. Dynamics of Nuclear Protein Exploration Revealed by Intracellular Single Particle Tracking PALM Biophysical Journal. 102: 385a. DOI: 10.1016/J.Bpj.2011.11.2108 |
0.322 |
|
| 2011 |
Brody Y, Neufeld N, Bieberstein N, Causse SZ, Böhnlein EM, Neugebauer KM, Darzacq X, Shav-Tal Y. The in vivo kinetics of RNA polymerase II elongation during co-transcriptional splicing. Plos Biology. 9: e1000573. PMID 21264352 DOI: 10.1371/journal.pbio.1000573 |
0.334 |
|
| 2011 |
Lionnet T, Czaplinski K, Darzacq X, Shav-Tal Y, Wells AL, Chao JA, Park HY, de Turris V, Lopez-Jones M, Singer RH. A transgenic mouse for in vivo detection of endogenous labeled mRNA. Nature Methods. 8: 165-70. PMID 21240280 DOI: 10.1038/Nmeth.1551 |
0.518 |
|
| 2010 |
Spiluttini B, Gu B, Belagal P, Smirnova AS, Nguyen VT, Hébert C, Schmidt U, Bertrand E, Darzacq X, Bensaude O. Splicing-independent recruitment of U1 snRNP to a transcription unit in living cells. Journal of Cell Science. 123: 2085-93. PMID 20519584 DOI: 10.1242/Jcs.061358 |
0.353 |
|
| 2009 |
Darzacq X, Yao J, Larson DR, Causse SZ, Bosanac L, de Turris V, Ruda VM, Lionnet T, Zenklusen D, Guglielmi B, Tjian R, Singer RH. Imaging transcription in living cells. Annual Review of Biophysics. 38: 173-96. PMID 19416065 DOI: 10.1146/Annurev.Biophys.050708.133728 |
0.764 |
|
| 2009 |
Singer RH, Shav-Tal Y, Darzacq X, de Turris V, Chao J, Gruenwald D, Lionnet T, Shenoy S. Using fluorescent proteins to analyze gene expression in real-time Biophysical Journal. 96: 205a. DOI: 10.1016/J.Bpj.2008.12.1832 |
0.569 |
|
| 2008 |
Darzacq X, Singer RH. The dynamic range of transcription. Molecular Cell. 30: 545-6. PMID 18538652 DOI: 10.1016/j.molcel.2008.05.009 |
0.498 |
|
| 2007 |
Garcia M, Darzacq X, Devaux F, Singer RH, Jacq C. Yeast mitochondrial transcriptomics. Methods in Molecular Biology (Clifton, N.J.). 372: 505-28. PMID 18314748 DOI: 10.1007/978-1-59745-365-3_35 |
0.482 |
|
| 2007 |
Darzacq X, Shav-Tal Y, de Turris V, Brody Y, Shenoy SM, Phair RD, Singer RH. In vivo dynamics of RNA polymerase II transcription. Nature Structural & Molecular Biology. 14: 796-806. PMID 17676063 DOI: 10.1038/Nsmb1280 |
0.586 |
|
| 2007 |
Garcia M, Darzacq X, Delaveau T, Jourdren L, Singer RH, Jacq C. Mitochondria-associated yeast mRNAs and the biogenesis of molecular complexes. Molecular Biology of the Cell. 18: 362-8. PMID 17108321 DOI: 10.1091/Mbc.E06-09-0827 |
0.458 |
|
| 2007 |
Darzacq X, Singer RH, Shav-Tal Y. Dissecting cellular activity from single genes to single mRNAs Chemical Analysis. 172: 29-39. DOI: 10.1002/9780470119501.ch2 |
0.448 |
|
| 2006 |
Kittur N, Darzacq X, Roy S, Singer RH, Meier UT. Dynamic association and localization of human H/ACA RNP proteins. Rna (New York, N.Y.). 12: 2057-62. PMID 17135485 DOI: 10.1261/rna.249306 |
0.504 |
|
| 2006 |
Shav-Tal Y, Darzacq X, Singer RH. Gene expression within a dynamic nuclear landscape. The Embo Journal. 25: 3469-79. PMID 16900099 DOI: 10.1038/sj.emboj.7601226 |
0.495 |
|
| 2006 |
Darzacq X, Kittur N, Roy S, Shav-Tal Y, Singer RH, Meier UT. Stepwise RNP assembly at the site of H/ACA RNA transcription in human cells. The Journal of Cell Biology. 173: 207-18. PMID 16618814 DOI: 10.1083/jcb.200601105 |
0.534 |
|
| 2006 |
Richard P, Kiss AM, Darzacq X, Kiss T. Cotranscriptional recognition of human intronic box H/ACA snoRNAs occurs in a splicing-independent manner. Molecular and Cellular Biology. 26: 2540-9. PMID 16537900 DOI: 10.1128/MCB.26.7.2540-2549.2006 |
0.549 |
|
| 2005 |
Darzacq X, Singer RH, Shav-Tal Y. Dynamics of transcription and mRNA export. Current Opinion in Cell Biology. 17: 332-9. PMID 15901505 DOI: 10.1016/j.ceb.2005.04.004 |
0.54 |
|
| 2005 |
Shav-Tal Y, Blechman J, Darzacq X, Montagna C, Dye BT, Patton JG, Singer RH, Zipori D. Dynamic sorting of nuclear components into distinct nucleolar caps during transcriptional inhibition. Molecular Biology of the Cell. 16: 2395-413. PMID 15758027 DOI: 10.1091/Mbc.E04-11-0992 |
0.556 |
|
| 2004 |
Shav-Tal Y, Singer RH, Darzacq X. Imaging gene expression in single living cells. Nature Reviews. Molecular Cell Biology. 5: 855-61. PMID 15459666 DOI: 10.1038/nrm1494 |
0.481 |
|
| 2004 |
Shav-Tal Y, Darzacq X, Shenoy SM, Fusco D, Janicki SM, Spector DL, Singer RH. Dynamics of single mRNPs in nuclei of living cells. Science (New York, N.Y.). 304: 1797-800. PMID 15205532 DOI: 10.1126/Science.1099754 |
0.742 |
|
| 2003 |
Darzacq X, Powrie E, Gu W, Singer RH, Zenklusen D. RNA asymmetric distribution and daughter/mother differentiation in yeast. Current Opinion in Microbiology. 6: 614-20. PMID 14662358 DOI: 10.1016/J.Mib.2003.10.005 |
0.742 |
|
| 2003 |
Richard P, Darzacq X, Bertrand E, Jády BE, Verheggen C, Kiss T. A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs. The Embo Journal. 22: 4283-93. PMID 12912925 DOI: 10.1093/emboj/cdg394 |
0.565 |
|
| 2003 |
Jády BE, Darzacq X, Tucker KE, Matera AG, Bertrand E, Kiss T. Modification of Sm small nuclear RNAs occurs in the nucleoplasmic Cajal body following import from the cytoplasm. The Embo Journal. 22: 1878-88. PMID 12682020 DOI: 10.1093/Emboj/Cdg187 |
0.571 |
|
| 2002 |
Kiss AM, Jády BE, Darzacq X, Verheggen C, Bertrand E, Kiss T. A Cajal body-specific pseudouridylation guide RNA is composed of two box H/ACA snoRNA-like domains. Nucleic Acids Research. 30: 4643-9. PMID 12409454 |
0.55 |
|
| 2002 |
Darzacq X, Jády BE, Verheggen C, Kiss AM, Bertrand E, Kiss T. Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. The Embo Journal. 21: 2746-56. PMID 12032087 DOI: 10.1093/emboj/21.11.2746 |
0.554 |
|
| 2001 |
Kiss T, Darzacq X. Nucleolus: An «old» cellular organelle with new functions | Plus d'un siècle après sa découverte, un nouveau regard sur le nucléole Medecine/Sciences. 17: 730-736. |
0.31 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2018 |
Woringer M, Darzacq X. Protein motion in the nucleus: from anomalous diffusion to weak interactions. Biochemical Society Transactions. 46: 945-956. PMID 30065106 DOI: 10.1042/BST20170310 |
0.297 |
|
| 2014 |
Nawroth I, Mueller F, Basyuk E, Beerens N, Rahbek UL, Darzacq X, Bertrand E, Kjems J, Schmidt U. Stable assembly of HIV-1 export complexes occurs cotranscriptionally. Rna (New York, N.Y.). 20: 1-8. PMID 24255166 DOI: 10.1261/Rna.038182.113 |
0.297 |
|
| 2014 |
Woringer M, Darzacq X, Izeddin I. Geometry of the nucleus: a perspective on gene expression regulation. Current Opinion in Chemical Biology. 20: 112-9. PMID 24981829 DOI: 10.1016/j.cbpa.2014.05.009 |
0.295 |
|
| 2016 |
Tantale K, Mueller F, Kozulic-Pirher A, Lesne A, Victor JM, Robert MC, Capozi S, Chouaib R, Bäcker V, Mateos-Langerak J, Darzacq X, Zimmer C, Basyuk E, Bertrand E. A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting. Nature Communications. 7: 12248. PMID 27461529 DOI: 10.1038/ncomms12248 |
0.292 |
|
| 2018 |
Lu H, Yu D, Hansen AS, Ganguly S, Liu R, Heckert A, Darzacq X, Zhou Q. Phase-separation mechanism for C-terminal hyperphosphorylation of RNA polymerase II. Nature. PMID 29849146 DOI: 10.1038/S41586-018-0174-3 |
0.292 |
|
| 2019 |
Oomen ME, Hansen AS, Liu Y, Darzacq X, Dekker J. CTCF sites display cell cycle-dependent dynamics in factor binding and nucleosome positioning. Genome Research. PMID 30655336 DOI: 10.1101/Gr.241547.118 |
0.29 |
|
| 2011 |
Richard E, Causse S, Spriet C, Fourré N, Trinel D, Darzacq X, Vandenbunder B, Heliot L. Short exposure to the DNA intercalator DRAQ5 dislocates the transcription machinery and induces cell death. Photochemistry and Photobiology. 87: 256-61. PMID 21175643 DOI: 10.1111/j.1751-1097.2010.00852.x |
0.289 |
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| 2023 |
Collombet S, Rall I, Dugast-Darzacq C, Heckert A, Halavatyi A, Le Saux A, Dailey G, Darzacq X, Heard E. RNA polymerase II depletion from the inactive X chromosome territory is not mediated by physical compartmentalization. Nature Structural & Molecular Biology. PMID 37291424 DOI: 10.1038/s41594-023-01008-5 |
0.28 |
|
| 2018 |
Bardales JA, Wieser E, Kawaji H, Murakawa Y, Darzacq X. Selective Activation of Alternative Core Promoters by Wnt-Responsive Enhancers. Genes. 9. PMID 29882899 DOI: 10.3390/genes9060270 |
0.278 |
|
| 2013 |
Cisse II, Izeddin I, Causse SZ, Boudarene L, Senecal A, Muresan L, Dugast-Darzacq C, Hajj B, Dahan M, Darzacq X. Real-time dynamics of RNA polymerase II clustering in live human cells. Science (New York, N.Y.). 341: 664-7. PMID 23828889 DOI: 10.1126/Science.1239053 |
0.276 |
|
| 2015 |
Normanno D, Boudarène L, Dugast-Darzacq C, Chen J, Richter C, Proux F, Bénichou O, Voituriez R, Darzacq X, Dahan M. Probing the target search of DNA-binding proteins in mammalian cells using TetR as model searcher. Nature Communications. 6: 7357. PMID 26151127 DOI: 10.1038/ncomms8357 |
0.273 |
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| 2010 |
Napolitano G, Amente S, Castiglia V, Gargano B, Ruda V, Darzacq X, Bensaude O, Majello B, Lania L. Caffeine prevents transcription inhibition and P-TEFb/7SK dissociation following UV-induced DNA damage. Plos One. 5: e11245. PMID 20574533 DOI: 10.1371/Journal.Pone.0011245 |
0.271 |
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| 2018 |
Boehning M, Dugast-Darzacq C, Rankovic M, Hansen AS, Yu T, Marie-Nelly H, McSwiggen DT, Kokic G, Dailey GM, Cramer P, Darzacq X, Zweckstetter M. RNA polymerase II clustering through carboxy-terminal domain phase separation. Nature Structural & Molecular Biology. PMID 30127355 DOI: 10.1038/s41594-018-0112-y |
0.271 |
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| 2013 |
Haimovich G, Medina DA, Causse SZ, Garber M, Millán-Zambrano G, Barkai O, Chávez S, Pérez-OrtÃn JE, Darzacq X, Choder M. Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis. Cell. 153: 1000-11. PMID 23706738 DOI: 10.1016/j.cell.2013.05.012 |
0.27 |
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| 2014 |
Mota S, Vieira N, Barbosa S, Delaveau T, Torchet C, Le Saux A, Garcia M, Pereira A, Lemoine S, Coulpier F, Darzacq X, Benard L, Casal M, Devaux F, Paiva S. Role of the DHH1 gene in the regulation of monocarboxylic acids transporters expression in Saccharomyces cerevisiae. Plos One. 9: e111589. PMID 25365506 DOI: 10.1371/Journal.Pone.0111589 |
0.259 |
|
| 2014 |
Récamier V, Izeddin I, Bosanac L, Dahan M, Proux F, Darzacq X. Single cell correlation fractal dimension of chromatin: a framework to interpret 3D single molecule super-resolution. Nucleus (Austin, Tex.). 5: 75-84. PMID 24637833 DOI: 10.4161/nucl.28227 |
0.259 |
|
| 2017 |
Sun Y, Leong NT, Jiang T, Tangara A, Darzacq X, Drubin DG. Switch-like Arp2/3 activation upon WASP and WIP recruitment to an apparent threshold level by multivalent linker proteins in vivo. Elife. 6. PMID 28813247 DOI: 10.7554/Elife.29140 |
0.25 |
|
| 2011 |
Izeddin I, Darzacq X, Dahan M. [Imaging of single molecules in live cells]. MéDecine Sciences : M/S. 27: 547-52. PMID 21609678 DOI: 10.1051/medsci/2011275022 |
0.242 |
|
| 1999 |
Ganot P, Jády BE, Bortolin ML, Darzacq X, Kiss T. Nucleolar factors direct the 2'-O-ribose methylation and pseudouridylation of U6 spliceosomal RNA. Molecular and Cellular Biology. 19: 6906-17. PMID 10490628 |
0.238 |
|
| 2021 |
Seong BKA, Dharia NV, Lin S, Donovan KA, Chong S, Robichaud A, Conway A, Hamze A, Ross L, Alexe G, Adane B, Nabet B, Ferguson FM, Stolte B, Wang EJ, ... ... Darzacq X, et al. TRIM8 modulates the EWS/FLI oncoprotein to promote survival in Ewing sarcoma. Cancer Cell. PMID 34329586 DOI: 10.1016/j.ccell.2021.07.003 |
0.23 |
|
| 2011 |
Normanno D, Boudarene L, Dugast-Darzacq C, Darzacq X, Dahan M. Probing Target Search Mechanisms of Transcription Factors in Human Cells Biophysical Journal. 100: 64a. DOI: 10.1016/j.bpj.2010.12.550 |
0.229 |
|
| 2000 |
Darzacq X, Kiss T. Processing of intron-encoded box C/D small nucleolar RNAs lacking a 5',3'-terminal stem structure. Molecular and Cellular Biology. 20: 4522-31. PMID 10848579 DOI: 10.1128/MCB.20.13.4522-4531.2000 |
0.219 |
|
| 2012 |
Izeddin I, El Beheiry M, Andilla J, Ciepielewski D, Darzacq X, Dahan M. PSF shaping using adaptive optics for three-dimensional single-molecule super-resolution imaging and tracking. Optics Express. 20: 4957-67. PMID 22418300 DOI: 10.1364/OE.20.004957 |
0.217 |
|
| 2013 |
Clouvel G, Jasaitis A, Sillibourne J, Izeddin I, El Beheiry M, Levecq X, Dahan M, Bornens M, Darzacq X. Dual-color 3D PALM/dSTORM imaging of centrosomal proteins using MicAO 3DSR Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8590. DOI: 10.1117/12.2001986 |
0.209 |
|
| 2022 |
Heckert A, Dahal L, Tijan R, Darzacq X. Recovering mixtures of fast-diffusing states from short single-particle trajectories. Elife. 11. PMID 36066004 DOI: 10.7554/eLife.70169 |
0.208 |
|
| 2011 |
Sillibourne JE, Specht CG, Izeddin I, Hurbain I, Tran P, Triller A, Darzacq X, Dahan M, Bornens M. Assessing the localization of centrosomal proteins by PALM/STORM nanoscopy. Cytoskeleton (Hoboken, N.J.). 68: 619-27. PMID 21976302 DOI: 10.1002/Cm.20536 |
0.195 |
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| 2015 |
Noizet M, Lagoutte E, Gratigny M, Bouschbacher M, Lazareth I, Roest Crollius H, Darzacq X, Dugast-Darzacq C. Master regulators in primary skin fibroblast fate reprogramming in a human ex-vivo model of chronic wounds. Wound Repair and Regeneration : Official Publication of the Wound Healing Society [and] the European Tissue Repair Society. PMID 26663515 DOI: 10.1111/wrr.12392 |
0.192 |
|
| 2009 |
Izeddin I, Specht CG, Darzacq X, Triller A, Zimmer C, Dahan M. Imaging Actin Filaments in Synaptic Spines Beyond the Diffraction Limit of Light Biophysical Journal. 96: 637a. DOI: 10.1016/j.bpj.2008.12.3367 |
0.184 |
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| 2017 |
Chiba K, Lorbeer FK, Shain AH, McSwiggen DT, Schruf E, Oh A, Ryu J, Darzacq X, Bastian BC, Hockemeyer D. Mutations in the promoter of the telomerase gene TERT contribute to tumorigenesis by a two-step mechanism. Science (New York, N.Y.). PMID 28818973 DOI: 10.1126/Science.Aao0535 |
0.184 |
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| 2013 |
Normanno D, Boudaréne L, Dugast-Darzacq C, Darzacq X, Dahan M. How DNA-Binding Proteins find their Target Sites in Human Cells Biophysical Journal. 104: 541a-542a. DOI: 10.1016/J.BPJ.2012.11.2999 |
0.183 |
|
| 2017 |
Miné-Hattab J, Recamier V, Izeddin I, Rothstein R, Darzacq X. Multi-scale tracking reveals scale-dependent chromatin dynamics after DNA damage. Molecular Biology of the Cell. PMID 28794266 DOI: 10.1091/Mbc.E17-05-0317 |
0.183 |
|
| 2013 |
Mueller F, Senecal A, Tantale K, Marie-Nelly H, Ly N, Collin O, Basyuk E, Bertrand E, Darzacq X, Zimmer C. FISH-quant: automatic counting of transcripts in 3D FISH images. Nature Methods. 10: 277-8. PMID 23538861 DOI: 10.1038/nmeth.2406 |
0.182 |
|
| 2013 |
Abrahamsson S, Chen J, Hajj B, Stallinga S, Katsov AY, Wisniewski J, Mizuguchi G, Soule P, Mueller F, Dugast Darzacq C, Darzacq X, Wu C, Bargmann CI, Agard DA, Dahan M, et al. Fast multicolor 3D imaging using aberration-corrected multifocus microscopy. Nature Methods. 10: 60-3. PMID 23223154 DOI: 10.1038/Nmeth.2277 |
0.164 |
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| 2014 |
Hajj B, El Beheiry M, Izeddin I, Darzacq X, Dahan M. Accessing the third dimension in localization-based super-resolution microscopy. Physical Chemistry Chemical Physics : Pccp. 16: 16340-8. PMID 24901106 DOI: 10.1039/c4cp01380h |
0.163 |
|
| 2011 |
Izeddin I, Specht CG, Lelek M, Darzacq X, Triller A, Zimmer C, Dahan M. Super-resolution dynamic imaging of dendritic spines using a low-affinity photoconvertible actin probe. Plos One. 6: e15611. PMID 21264214 DOI: 10.1371/journal.pone.0015611 |
0.16 |
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| 2013 |
Specht CG, Izeddin I, Rodriguez PC, El Beheiry M, Rostaing P, Darzacq X, Dahan M, Triller A. Quantitative nanoscopy of inhibitory synapses: counting gephyrin molecules and receptor binding sites. Neuron. 79: 308-21. PMID 23889935 DOI: 10.1016/j.neuron.2013.05.013 |
0.144 |
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| 2020 |
Chen Z, Shaw A, Wilson H, Woringer M, Darzacq X, Marqusee S, Wang Q, Bustamante C. Single-molecule diffusometry reveals no catalysis-induced diffusion enhancement of alkaline phosphatase as proposed by FCS experiments. Proceedings of the National Academy of Sciences of the United States of America. PMID 32817484 DOI: 10.1073/Pnas.2006900117 |
0.119 |
|
| 2018 |
Miné-Hattab J, Darzacq X. [Chromatin mobility upon DNA damage: a multi-scale story]. Medecine Sciences : M/S. 34: 778-781. PMID 30451666 DOI: 10.1051/medsci/2018214 |
0.107 |
|
| 1998 |
N'Diaye EN, Darzacq X, Astarie-Dequeker C, Daffeé M, Calafat J, Maridonneau-Parini I. Fusion of azurophil granules with phagosomes and activation of the tyrosine kinase Hck are specifically inhibited during phagocytosis of mycobacteria by human neutrophils Journal of Immunology. 161: 4983-4991. PMID 9794435 |
0.079 |
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| 2014 |
Petkovic M, Jemaiel A, Daste F, Specht CG, Izeddin I, Vorkel D, Verbavatz JM, Darzacq X, Triller A, Pfenninger KH, Tareste D, Jackson CL, Galli T. The SNARE Sec22b has a non-fusogenic function in plasma membrane expansion. Nature Cell Biology. 16: 434-44. PMID 24705552 DOI: 10.1038/Ncb2937 |
0.058 |
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