Erica N. Larschan - Publications

Affiliations: 
Molecular Biology, Cell Biology and Biochemistry Brown University, Providence, RI 

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Ray M, Zaborowsky J, Mahableshwarkar P, Vaidyanathan S, Shum J, Viswanathan R, Huang A, Wang SH, Johnson V, Wake N, Conard AM, Conicella AE, Puterbaugh R, Fawzi NL, Larschan E. Dual DNA/RNA-binding factor regulates dynamics of hnRNP splicing condensates. Biorxiv : the Preprint Server For Biology. PMID 38260450 DOI: 10.1101/2024.01.11.575216  0.375
2023 Aguilera J, Duan J, Lee SM, Ray M, Larschan E. The CLAMP GA-binding transcription factor regulates heat stress-induced transcriptional repression by associating with 3D loop anchors. Biorxiv : the Preprint Server For Biology. PMID 37873306 DOI: 10.1101/2023.10.08.561401  0.351
2023 Ray M, Conard AM, Urban J, Mahableshwarkar P, Aguilera J, Huang A, Vaidyanathan S, Larschan E. Sex-specific splicing occurs genome-wide during early embryogenesis. Elife. 12. PMID 37466240 DOI: 10.7554/eLife.87865  0.414
2022 Calderon D, Blecher-Gonen R, Huang X, Secchia S, Kentro J, Daza RM, Martin B, Dulja A, Schaub C, Trapnell C, Larschan E, O'Connor-Giles KM, Furlong EEM, Shendure J. The continuum of embryonic development at single-cell resolution. Science (New York, N.Y.). 377: eabn5800. PMID 35926038 DOI: 10.1126/science.abn5800  0.394
2022 Bigness J, Loinaz X, Patel S, Larschan E, Singh R. Integrating Long-Range Regulatory Interactions to Predict Gene Expression Using Graph Convolutional Networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 35325548 DOI: 10.1089/cmb.2021.0316  0.63
2021 Duan J, Rieder L, Colonnetta MM, Huang A, Mckenney M, Watters S, Deshpande G, Jordan W, Fawzi N, Larschan E. CLAMP and Zelda function together to promote zygotic genome activation. Elife. 10. PMID 34342574 DOI: 10.7554/eLife.69937  0.779
2021 Jordan W, Larschan E. The zinc finger protein CLAMP promotes long-range chromatin interactions that mediate dosage compensation of the Drosophila male X-chromosome. Epigenetics & Chromatin. 14: 29. PMID 34187599 DOI: 10.1186/s13072-021-00399-3  0.385
2021 Conard AM, Goodman N, Hu Y, Perrimon N, Singh R, Lawrence C, Larschan E. TIMEOR: a web-based tool to uncover temporal regulatory mechanisms from multi-omics data. Nucleic Acids Research. PMID 34125906 DOI: 10.1093/nar/gkab384  0.717
2020 Ray M, Larschan E. Getting started: altering promoter choice as a mechanism for cell type differentiation. Genes & Development. 34: 619-620. PMID 32358039 DOI: 10.1101/Gad.338723.120  0.321
2019 Rieder LE, Jordan WT, Larschan EN. Targeting of the Dosage-Compensated Male X-Chromosome during Early Drosophila Development. Cell Reports. 29: 4268-4275.e2. PMID 31875538 DOI: 10.1016/J.Celrep.2019.11.095  0.771
2019 Duan J, Larschan EN. Dosage Compensation: How to Be Compensated…Or Not? Current Biology : Cb. 29: R1229-R1231. PMID 31794753 DOI: 10.1016/J.Cub.2019.09.065  0.362
2019 Tikhonova E, Fedotova A, Bonchuk A, Mogila V, Larschan EN, Georgiev P, Maksimenko O. The simultaneous interaction of MSL2 with CLAMP and DNA provides redundancy in the initiation of dosage compensation in Drosophila males. Development (Cambridge, England). PMID 31320325 DOI: 10.1242/Dev.179663  0.444
2019 Jordan W, Rieder LE, Larschan E. Diverse Genome Topologies Characterize Dosage Compensation across Species. Trends in Genetics : Tig. PMID 30808531 DOI: 10.1016/J.Tig.2019.02.001  0.76
2018 Kaye EG, Booker M, Kurland JV, Conicella AE, Fawzi NL, Bulyk ML, Tolstorukov MY, Larschan E. Differential Occupancy of Two GA-Binding Proteins Promotes Targeting of the Drosophila Dosage Compensation Complex to the Male X Chromosome. Cell Reports. 22: 3227-3239. PMID 29562179 DOI: 10.1016/J.Celrep.2018.02.098  0.511
2017 Urban JA, Urban JM, Kuzu G, Larschan EN. The Drosophila CLAMP protein associates with diverse proteins on chromatin. Plos One. 12: e0189772. PMID 29281702 DOI: 10.1371/Journal.Pone.0189772  0.549
2017 Urban J, Kuzu G, Bowman S, Scruggs B, Henriques T, Kingston R, Adelman K, Tolstorukov M, Larschan E. Enhanced chromatin accessibility of the dosage compensated Drosophila male X-chromosome requires the CLAMP zinc finger protein. Plos One. 12: e0186855. PMID 29077765 DOI: 10.1371/Journal.Pone.0186855  0.561
2017 Rieder LE, Koreski KP, Boltz KA, Kuzu G, Urban JA, Bowman SK, Zeidman A, Jordan WT, Tolstorukov MY, Marzluff WF, Duronio RJ, Larschan EN. Histone locus regulation by the Drosophila dosage compensation adaptor protein CLAMP. Genes & Development. PMID 28838946 DOI: 10.1101/Gad.300855.117  0.781
2017 Kaye EG, Kurbidaeva A, Wolle D, Aoki T, Schedl P, Larschan E. "Drosophila dosage compensation loci associate with a boundary forming insulator complex." Molecular and Cellular Biology. PMID 28784719 DOI: 10.1128/Mcb.00253-17  0.46
2016 Urban JA, Doherty CA, Jordan WT, Bliss JE, Feng J, Soruco MM, Rieder LE, Tsiarli MA, Larschan EN. The essential Drosophila CLAMP protein differentially regulates non-coding roX RNAs in male and females. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 27995349 DOI: 10.1007/S10577-016-9541-9  0.78
2016 Kuzu G, Kaye EG, Chery J, Siggers T, Yang L, Dobson JR, Boor S, Bliss J, Liu W, Jogl G, Rohs R, Singh ND, Bulyk ML, Tolstorukov MY, Larschan E. Expansion of GA Dinucleotide Repeats Increases the Density of CLAMP Binding Sites on the X-Chromosome to Promote Drosophila Dosage Compensation. Plos Genetics. 12: e1006120. PMID 27414415 DOI: 10.1371/Journal.Pgen.1006120  0.521
2016 Day DS, Zhang B, Stevens SM, Ferrari F, Larschan EN, Park PJ, Pu WT. Comprehensive analysis of promoter-proximal RNA polymerase II pausing across mammalian cell types. Genome Biology. 17: 120. PMID 27259512 DOI: 10.1186/S13059-016-0984-2  0.452
2016 Mieczkowski J, Cook A, Bowman SK, Mueller B, Alver BH, Kundu S, Deaton AM, Urban JA, Larschan E, Park PJ, Kingston RE, Tolstorukov MY. MNase titration reveals differences between nucleosome occupancy and chromatin accessibility. Nature Communications. 7: 11485. PMID 27151365 DOI: 10.1038/Ncomms11485  0.419
2014 Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, ... ... Larschan EN, et al. Comparative analysis of metazoan chromatin organization. Nature. 512: 449-52. PMID 25164756 DOI: 10.1038/Nature13415  0.502
2014 Rieder LE, Larschan EN. Wisdom from the fly. Trends in Genetics : Tig. 30: 479-81. PMID 25161083 DOI: 10.1016/J.Tig.2014.08.003  0.737
2014 Soruco MM, Larschan E. A new player in X identification: the CLAMP protein is a key factor in Drosophila dosage compensation. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 22: 505-15. PMID 25102930 DOI: 10.1007/S10577-014-9438-4  0.475
2014 Chery J, Larschan E. X-marks the spot: X-chromosome identification during dosage compensation. Biochimica Et Biophysica Acta. 1839: 234-40. PMID 24406325 DOI: 10.1016/J.Bbagrm.2013.12.007  0.501
2013 Soruco MM, Chery J, Bishop EP, Siggers T, Tolstorukov MY, Leydon AR, Sugden AU, Goebel K, Feng J, Xia P, Vedenko A, Bulyk ML, Park PJ, Larschan E. The CLAMP protein links the MSL complex to the X chromosome during Drosophila dosage compensation. Genes & Development. 27: 1551-6. PMID 23873939 DOI: 10.1101/Gad.214585.113  0.506
2012 Bateman JR, Larschan E, D'Souza R, Marshall LS, Dempsey KE, Johnson JE, Mellone BG, Kuroda MI. A genome-wide screen identifies genes that affect somatic homolog pairing in Drosophila. G3 (Bethesda, Md.). 2: 731-40. PMID 22870396 DOI: 10.1534/G3.112.002840  0.495
2012 Larschan E, Soruco MM, Lee OK, Peng S, Bishop E, Chery J, Goebel K, Feng J, Park PJ, Kuroda MI. Identification of chromatin-associated regulators of MSL complex targeting in Drosophila dosage compensation. Plos Genetics. 8: e1002830. PMID 22844249 DOI: 10.1371/Journal.Pgen.1002830  0.546
2012 Alekseyenko AA, Ho JW, Peng S, Gelbart M, Tolstorukov MY, Plachetka A, Kharchenko PV, Jung YL, Gorchakov AA, Larschan E, Gu T, Minoda A, Riddle NC, Schwartz YB, Elgin SC, et al. Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context. Plos Genetics. 8: e1002646. PMID 22570616 DOI: 10.1371/Journal.Pgen.1002646  0.524
2011 Larschan E, Bishop EP, Kharchenko PV, Core LJ, Lis JT, Park PJ, Kuroda MI. X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila. Nature. 471: 115-8. PMID 21368835 DOI: 10.1038/Nature09757  0.564
2011 Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, et al. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 471: 480-5. PMID 21179089 DOI: 10.1038/Nature09725  0.553
2009 Gelbart ME, Larschan E, Peng S, Park PJ, Kuroda MI. Drosophila MSL complex globally acetylates H4K16 on the male X chromosome for dosage compensation. Nature Structural & Molecular Biology. 16: 825-32. PMID 19648925 DOI: 10.1038/Nsmb.1644  0.466
2008 Alekseyenko AA, Peng S, Larschan E, Gorchakov AA, Lee OK, Kharchenko P, McGrath SD, Wang CI, Mardis ER, Park PJ, Kuroda MI. A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome. Cell. 134: 599-609. PMID 18724933 DOI: 10.1016/J.Cell.2008.06.033  0.494
2007 Larschan E, Alekseyenko AA, Gortchakov AA, Peng S, Li B, Yang P, Workman JL, Park PJ, Kuroda MI. MSL complex is attracted to genes marked by H3K36 trimethylation using a sequence-independent mechanism. Molecular Cell. 28: 121-33. PMID 17936709 DOI: 10.1016/J.Molcel.2007.08.011  0.527
2007 Peng S, Alekseyenko AA, Larschan E, Kuroda MI, Park PJ. Normalization and experimental design for ChIP-chip data. Bmc Bioinformatics. 8: 219. PMID 17592629 DOI: 10.1186/1471-2105-8-219  0.354
2007 Bai X, Larschan E, Kwon SY, Badenhorst P, Kuroda MI. Regional control of chromatin organization by noncoding roX RNAs and the NURF remodeling complex in Drosophila melanogaster Genetics. 176: 1491-1499. PMID 17507677 DOI: 10.1534/Genetics.107.071571  0.511
2006 Larschan E, Alekseyenko AA, Lai WR, Park PJ, Kuroda MI. MSL complex associates with clusters of actively transcribed genes along the Drosophila male X chromosome. Cold Spring Harbor Symposia On Quantitative Biology. 71: 385-94. PMID 17381321 DOI: 10.1101/Sqb.2006.71.026  0.529
2006 Alekseyenko AA, Larschan E, Lai WR, Park PJ, Kuroda MI. High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome. Genes & Development. 20: 848-57. PMID 16547173 DOI: 10.1101/Gad.1400206  0.566
2005 Prather DM, Larschan E, Winston F. Evidence that the elongation factor TFIIS plays a role in transcription initiation at GAL1 in Saccharomyces cerevisiae. Molecular and Cellular Biology. 25: 2650-9. PMID 15767671 DOI: 10.1128/Mcb.25.7.2650-2659.2005  0.711
2005 Larschan E, Winston F. The Saccharomyces cerevisiae Srb8-Srb11 complex functions with the SAGA complex during Gal4-activated transcription. Molecular and Cellular Biology. 25: 114-23. PMID 15601835 DOI: 10.1128/Mcb.25.1.114-123.2005  0.63
2001 Larschan E, Winston F. The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4 Genes and Development. 15: 1946-1956. PMID 11485989 DOI: 10.1101/Gad.911501  0.662
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