| Year |
Citation |
Score |
| 2024 |
Ray M, Zaborowsky J, Mahableshwarkar P, Vaidyanathan S, Shum J, Viswanathan R, Huang A, Wang SH, Johnson V, Wake N, Conard AM, Conicella AE, Puterbaugh R, Fawzi NL, Larschan E. Dual DNA/RNA-binding factor regulates dynamics of hnRNP splicing condensates. Biorxiv : the Preprint Server For Biology. PMID 38260450 DOI: 10.1101/2024.01.11.575216 |
0.374 |
|
| 2023 |
Aguilera J, Duan J, Lee SM, Ray M, Larschan E. The CLAMP GA-binding transcription factor regulates heat stress-induced transcriptional repression by associating with 3D loop anchors. Biorxiv : the Preprint Server For Biology. PMID 37873306 DOI: 10.1101/2023.10.08.561401 |
0.35 |
|
| 2023 |
Ray M, Conard AM, Urban J, Mahableshwarkar P, Aguilera J, Huang A, Vaidyanathan S, Larschan E. Sex-specific splicing occurs genome-wide during early embryogenesis. Elife. 12. PMID 37466240 DOI: 10.7554/eLife.87865 |
0.415 |
|
| 2022 |
Calderon D, Blecher-Gonen R, Huang X, Secchia S, Kentro J, Daza RM, Martin B, Dulja A, Schaub C, Trapnell C, Larschan E, O'Connor-Giles KM, Furlong EEM, Shendure J. The continuum of embryonic development at single-cell resolution. Science (New York, N.Y.). 377: eabn5800. PMID 35926038 DOI: 10.1126/science.abn5800 |
0.394 |
|
| 2022 |
Bigness J, Loinaz X, Patel S, Larschan E, Singh R. Integrating Long-Range Regulatory Interactions to Predict Gene Expression Using Graph Convolutional Networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 35325548 DOI: 10.1089/cmb.2021.0316 |
0.63 |
|
| 2021 |
Duan J, Rieder L, Colonnetta MM, Huang A, Mckenney M, Watters S, Deshpande G, Jordan W, Fawzi N, Larschan E. CLAMP and Zelda function together to promote zygotic genome activation. Elife. 10. PMID 34342574 DOI: 10.7554/eLife.69937 |
0.781 |
|
| 2021 |
Jordan W, Larschan E. The zinc finger protein CLAMP promotes long-range chromatin interactions that mediate dosage compensation of the Drosophila male X-chromosome. Epigenetics & Chromatin. 14: 29. PMID 34187599 DOI: 10.1186/s13072-021-00399-3 |
0.385 |
|
| 2021 |
Conard AM, Goodman N, Hu Y, Perrimon N, Singh R, Lawrence C, Larschan E. TIMEOR: a web-based tool to uncover temporal regulatory mechanisms from multi-omics data. Nucleic Acids Research. PMID 34125906 DOI: 10.1093/nar/gkab384 |
0.722 |
|
| 2020 |
Ray M, Larschan E. Getting started: altering promoter choice as a mechanism for cell type differentiation. Genes & Development. 34: 619-620. PMID 32358039 DOI: 10.1101/Gad.338723.120 |
0.321 |
|
| 2019 |
Rieder LE, Jordan WT, Larschan EN. Targeting of the Dosage-Compensated Male X-Chromosome during Early Drosophila Development. Cell Reports. 29: 4268-4275.e2. PMID 31875538 DOI: 10.1016/J.Celrep.2019.11.095 |
0.773 |
|
| 2019 |
Duan J, Larschan EN. Dosage Compensation: How to Be Compensated…Or Not? Current Biology : Cb. 29: R1229-R1231. PMID 31794753 DOI: 10.1016/J.Cub.2019.09.065 |
0.363 |
|
| 2019 |
Tikhonova E, Fedotova A, Bonchuk A, Mogila V, Larschan EN, Georgiev P, Maksimenko O. The simultaneous interaction of MSL2 with CLAMP and DNA provides redundancy in the initiation of dosage compensation in Drosophila males. Development (Cambridge, England). PMID 31320325 DOI: 10.1242/Dev.179663 |
0.444 |
|
| 2019 |
Jordan W, Rieder LE, Larschan E. Diverse Genome Topologies Characterize Dosage Compensation across Species. Trends in Genetics : Tig. PMID 30808531 DOI: 10.1016/J.Tig.2019.02.001 |
0.762 |
|
| 2018 |
Kaye EG, Booker M, Kurland JV, Conicella AE, Fawzi NL, Bulyk ML, Tolstorukov MY, Larschan E. Differential Occupancy of Two GA-Binding Proteins Promotes Targeting of the Drosophila Dosage Compensation Complex to the Male X Chromosome. Cell Reports. 22: 3227-3239. PMID 29562179 DOI: 10.1016/J.Celrep.2018.02.098 |
0.511 |
|
| 2017 |
Urban JA, Urban JM, Kuzu G, Larschan EN. The Drosophila CLAMP protein associates with diverse proteins on chromatin. Plos One. 12: e0189772. PMID 29281702 DOI: 10.1371/Journal.Pone.0189772 |
0.549 |
|
| 2017 |
Urban J, Kuzu G, Bowman S, Scruggs B, Henriques T, Kingston R, Adelman K, Tolstorukov M, Larschan E. Enhanced chromatin accessibility of the dosage compensated Drosophila male X-chromosome requires the CLAMP zinc finger protein. Plos One. 12: e0186855. PMID 29077765 DOI: 10.1371/Journal.Pone.0186855 |
0.562 |
|
| 2017 |
Rieder LE, Koreski KP, Boltz KA, Kuzu G, Urban JA, Bowman SK, Zeidman A, Jordan WT, Tolstorukov MY, Marzluff WF, Duronio RJ, Larschan EN. Histone locus regulation by the Drosophila dosage compensation adaptor protein CLAMP. Genes & Development. PMID 28838946 DOI: 10.1101/Gad.300855.117 |
0.782 |
|
| 2017 |
Kaye EG, Kurbidaeva A, Wolle D, Aoki T, Schedl P, Larschan E. "Drosophila dosage compensation loci associate with a boundary forming insulator complex." Molecular and Cellular Biology. PMID 28784719 DOI: 10.1128/Mcb.00253-17 |
0.46 |
|
| 2016 |
Urban JA, Doherty CA, Jordan WT, Bliss JE, Feng J, Soruco MM, Rieder LE, Tsiarli MA, Larschan EN. The essential Drosophila CLAMP protein differentially regulates non-coding roX RNAs in male and females. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 27995349 DOI: 10.1007/S10577-016-9541-9 |
0.782 |
|
| 2016 |
Kuzu G, Kaye EG, Chery J, Siggers T, Yang L, Dobson JR, Boor S, Bliss J, Liu W, Jogl G, Rohs R, Singh ND, Bulyk ML, Tolstorukov MY, Larschan E. Expansion of GA Dinucleotide Repeats Increases the Density of CLAMP Binding Sites on the X-Chromosome to Promote Drosophila Dosage Compensation. Plos Genetics. 12: e1006120. PMID 27414415 DOI: 10.1371/Journal.Pgen.1006120 |
0.522 |
|
| 2016 |
Day DS, Zhang B, Stevens SM, Ferrari F, Larschan EN, Park PJ, Pu WT. Comprehensive analysis of promoter-proximal RNA polymerase II pausing across mammalian cell types. Genome Biology. 17: 120. PMID 27259512 DOI: 10.1186/S13059-016-0984-2 |
0.451 |
|
| 2016 |
Mieczkowski J, Cook A, Bowman SK, Mueller B, Alver BH, Kundu S, Deaton AM, Urban JA, Larschan E, Park PJ, Kingston RE, Tolstorukov MY. MNase titration reveals differences between nucleosome occupancy and chromatin accessibility. Nature Communications. 7: 11485. PMID 27151365 DOI: 10.1038/Ncomms11485 |
0.419 |
|
| 2014 |
Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, ... ... Larschan EN, et al. Comparative analysis of metazoan chromatin organization. Nature. 512: 449-52. PMID 25164756 DOI: 10.1038/Nature13415 |
0.503 |
|
| 2014 |
Rieder LE, Larschan EN. Wisdom from the fly. Trends in Genetics : Tig. 30: 479-81. PMID 25161083 DOI: 10.1016/J.Tig.2014.08.003 |
0.74 |
|
| 2014 |
Soruco MM, Larschan E. A new player in X identification: the CLAMP protein is a key factor in Drosophila dosage compensation. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 22: 505-15. PMID 25102930 DOI: 10.1007/S10577-014-9438-4 |
0.475 |
|
| 2014 |
Chery J, Larschan E. X-marks the spot: X-chromosome identification during dosage compensation. Biochimica Et Biophysica Acta. 1839: 234-40. PMID 24406325 DOI: 10.1016/J.Bbagrm.2013.12.007 |
0.501 |
|
| 2013 |
Soruco MM, Chery J, Bishop EP, Siggers T, Tolstorukov MY, Leydon AR, Sugden AU, Goebel K, Feng J, Xia P, Vedenko A, Bulyk ML, Park PJ, Larschan E. The CLAMP protein links the MSL complex to the X chromosome during Drosophila dosage compensation. Genes & Development. 27: 1551-6. PMID 23873939 DOI: 10.1101/Gad.214585.113 |
0.506 |
|
| 2012 |
Bateman JR, Larschan E, D'Souza R, Marshall LS, Dempsey KE, Johnson JE, Mellone BG, Kuroda MI. A genome-wide screen identifies genes that affect somatic homolog pairing in Drosophila. G3 (Bethesda, Md.). 2: 731-40. PMID 22870396 DOI: 10.1534/G3.112.002840 |
0.496 |
|
| 2012 |
Larschan E, Soruco MM, Lee OK, Peng S, Bishop E, Chery J, Goebel K, Feng J, Park PJ, Kuroda MI. Identification of chromatin-associated regulators of MSL complex targeting in Drosophila dosage compensation. Plos Genetics. 8: e1002830. PMID 22844249 DOI: 10.1371/Journal.Pgen.1002830 |
0.546 |
|
| 2012 |
Alekseyenko AA, Ho JW, Peng S, Gelbart M, Tolstorukov MY, Plachetka A, Kharchenko PV, Jung YL, Gorchakov AA, Larschan E, Gu T, Minoda A, Riddle NC, Schwartz YB, Elgin SC, et al. Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context. Plos Genetics. 8: e1002646. PMID 22570616 DOI: 10.1371/Journal.Pgen.1002646 |
0.524 |
|
| 2011 |
Larschan E, Bishop EP, Kharchenko PV, Core LJ, Lis JT, Park PJ, Kuroda MI. X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila. Nature. 471: 115-8. PMID 21368835 DOI: 10.1038/Nature09757 |
0.564 |
|
| 2011 |
Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, et al. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 471: 480-5. PMID 21179089 DOI: 10.1038/Nature09725 |
0.553 |
|
| 2009 |
Gelbart ME, Larschan E, Peng S, Park PJ, Kuroda MI. Drosophila MSL complex globally acetylates H4K16 on the male X chromosome for dosage compensation. Nature Structural & Molecular Biology. 16: 825-32. PMID 19648925 DOI: 10.1038/Nsmb.1644 |
0.467 |
|
| 2008 |
Alekseyenko AA, Peng S, Larschan E, Gorchakov AA, Lee OK, Kharchenko P, McGrath SD, Wang CI, Mardis ER, Park PJ, Kuroda MI. A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome. Cell. 134: 599-609. PMID 18724933 DOI: 10.1016/J.Cell.2008.06.033 |
0.494 |
|
| 2007 |
Larschan E, Alekseyenko AA, Gortchakov AA, Peng S, Li B, Yang P, Workman JL, Park PJ, Kuroda MI. MSL complex is attracted to genes marked by H3K36 trimethylation using a sequence-independent mechanism. Molecular Cell. 28: 121-33. PMID 17936709 DOI: 10.1016/J.Molcel.2007.08.011 |
0.527 |
|
| 2007 |
Peng S, Alekseyenko AA, Larschan E, Kuroda MI, Park PJ. Normalization and experimental design for ChIP-chip data. Bmc Bioinformatics. 8: 219. PMID 17592629 DOI: 10.1186/1471-2105-8-219 |
0.354 |
|
| 2007 |
Bai X, Larschan E, Kwon SY, Badenhorst P, Kuroda MI. Regional control of chromatin organization by noncoding roX RNAs and the NURF remodeling complex in Drosophila melanogaster Genetics. 176: 1491-1499. PMID 17507677 DOI: 10.1534/Genetics.107.071571 |
0.511 |
|
| 2006 |
Larschan E, Alekseyenko AA, Lai WR, Park PJ, Kuroda MI. MSL complex associates with clusters of actively transcribed genes along the Drosophila male X chromosome. Cold Spring Harbor Symposia On Quantitative Biology. 71: 385-94. PMID 17381321 DOI: 10.1101/Sqb.2006.71.026 |
0.529 |
|
| 2006 |
Alekseyenko AA, Larschan E, Lai WR, Park PJ, Kuroda MI. High-resolution ChIP-chip analysis reveals that the Drosophila MSL complex selectively identifies active genes on the male X chromosome. Genes & Development. 20: 848-57. PMID 16547173 DOI: 10.1101/Gad.1400206 |
0.566 |
|
| 2005 |
Prather DM, Larschan E, Winston F. Evidence that the elongation factor TFIIS plays a role in transcription initiation at GAL1 in Saccharomyces cerevisiae. Molecular and Cellular Biology. 25: 2650-9. PMID 15767671 DOI: 10.1128/Mcb.25.7.2650-2659.2005 |
0.713 |
|
| 2005 |
Larschan E, Winston F. The Saccharomyces cerevisiae Srb8-Srb11 complex functions with the SAGA complex during Gal4-activated transcription. Molecular and Cellular Biology. 25: 114-23. PMID 15601835 DOI: 10.1128/Mcb.25.1.114-123.2005 |
0.63 |
|
| 2001 |
Larschan E, Winston F. The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4 Genes and Development. 15: 1946-1956. PMID 11485989 DOI: 10.1101/Gad.911501 |
0.662 |
|
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