| Year |
Citation |
Score |
| 2024 |
Levine ZC, Sene A, Mkandawire W, Deme AB, Ndiaye T, Sy M, Gaye A, Diedhiou Y, Mbaye AM, Ndiaye IM, Gomis J, Ndiop M, Sene D, Faye Paye M, MacInnis BL, ... ... Park DJ, et al. Investigating the etiologies of non-malarial febrile illness in Senegal using metagenomic sequencing. Nature Communications. 15: 747. PMID 38272885 DOI: 10.1038/s41467-024-44800-7 |
0.567 |
|
| 2023 |
Welch NL, Zhu M, Hua C, Weller J, Mirhashemi ME, Nguyen TG, Mantena S, Bauer MR, Shaw BM, Ackerman CM, Thakku SG, Tse MW, Kehe J, Uwera MM, Eversley JS, ... ... Park DJ, et al. Author Correction: Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants. Nature Medicine. PMID 37946059 DOI: 10.1038/s41591-023-02684-y |
0.494 |
|
| 2023 |
Specht IOA, Petros BA, Moreno GK, Brock-Fisher T, Krasilnikova LA, Schifferli M, Yang K, Cronan P, Glennon O, Schaffner SF, Park DJ, MacInnis BL, Ozonoff A, Fry B, Mitzenmacher MD, et al. Inferring Viral Transmission Pathways from Within-Host Variation. Medrxiv : the Preprint Server For Health Sciences. PMID 37873325 DOI: 10.1101/2023.10.14.23297039 |
0.589 |
|
| 2023 |
Levine ZC, Sene A, Mkandawire W, Deme AB, Ndiaye T, Sy M, Gaye A, Diedhiou Y, Mbaye AM, Ndiaye I, Gomis J, Ndiop M, Sene D, Paye MF, MacInnis B, ... ... Park DJ, et al. Improving diagnosis of non-malarial fevers in Senegal: and the contribution of tick-borne bacteria. Medrxiv : the Preprint Server For Health Sciences. PMID 37662407 DOI: 10.1101/2023.08.24.23294564 |
0.557 |
|
| 2023 |
Oguzie JU, Petros BA, Oluniyi PE, Mehta SB, Eromon PE, Nair P, Adewale-Fasoro O, Ifoga PD, Odia I, Pastusiak A, Gbemisola OS, Aiyepada JO, Uyigue EA, Edamhande AP, Blessing O, ... ... Park DJ, et al. Metagenomic surveillance uncovers diverse and novel viral taxa in febrile patients from Nigeria. Nature Communications. 14: 4693. PMID 37542071 DOI: 10.1038/s41467-023-40247-4 |
0.59 |
|
| 2023 |
Chen NFG, Chaguza C, Gagne L, Doucette M, Smole S, Buzby E, Hall J, Ash S, Harrington R, Cofsky S, Clancy S, Kapsak CJ, Sevinsky J, Libuit K, Park DJ, et al. Development of an amplicon-based sequencing approach in response to the global emergence of mpox. Plos Biology. 21: e3002151. PMID 37310918 DOI: 10.1371/journal.pbio.3002151 |
0.352 |
|
| 2023 |
Adams G, Moreno GK, Petros BA, Uddin R, Levine Z, Kotzen B, Messer KS, Dobbins ST, DeRuff KC, Loreth CM, Brock-Fisher T, Schaffner SF, Chaluvadi S, Kanjilal S, Luban J, ... ... Park DJ, et al. Viral Lineages in the 2022 RSV Surge in the United States. The New England Journal of Medicine. PMID 36812457 DOI: 10.1056/NEJMc2216153 |
0.467 |
|
| 2023 |
Normandin E, Rudy M, Barkas N, Schaffner SF, Levine Z, Padera RF, Babadi M, Mukerji SS, Park DJ, MacInnis BL, Siddle KJ, Sabeti PC, Solomon IH. High-depth sequencing characterization of viral dynamics across tissues in fatal COVID-19 reveals compartmentalized infection. Nature Communications. 14: 574. PMID 36732505 DOI: 10.1038/s41467-022-34256-y |
0.538 |
|
| 2023 |
Adams G, Moreno GK, Petros BA, Uddin R, Levine Z, Kotzen B, Messer K, Dobbins ST, DeRuff KC, Loreth C, Brock-Fisher T, Schaffner SF, Chaluvadi S, Kanjilal S, Luban J, ... ... Park D, et al. The 2022 RSV surge was driven by multiple viral lineages. Medrxiv : the Preprint Server For Health Sciences. PMID 36656774 DOI: 10.1101/2023.01.04.23284195 |
0.59 |
|
| 2022 |
Chen NFG, Chaguza C, Gagne L, Doucette M, Smole S, Buzby E, Hall J, Ash S, Harrington R, Cofsky S, Clancy S, Kapsak CJ, Sevinsky J, Libuit K, Park DJ, et al. Multi-site validation of an amplicon-based sequencing approach for human monkeypox virus. Medrxiv : the Preprint Server For Health Sciences. PMID 36299420 DOI: 10.1101/2022.10.14.22280783 |
0.367 |
|
| 2022 |
Petros BA, Paull JS, Tomkins-Tinch CH, Loftness BC, DeRuff KC, Nair P, Gionet GL, Benz A, Brock-Fisher T, Hughes M, Yurkovetskiy L, Mulaudzi S, Leenerman E, Nyalile T, Moreno GK, ... ... Park DJ, et al. Multimodal surveillance of SARS-CoV-2 at a university enables development of a robust outbreak response framework. Med (New York, N.Y.). PMID 36198312 DOI: 10.1016/j.medj.2022.09.003 |
0.491 |
|
| 2022 |
Xiaoli L, Hagey JV, Park DJ, Gulvik CA, Young EL, Alikhan NF, Lawsin A, Hassell N, Knipe K, Oakeson KF, Retchless AC, Shakya M, Lo CC, Chain P, Page AJ, et al. Benchmark datasets for SARS-CoV-2 surveillance bioinformatics. Peerj. 10: e13821. PMID 36093336 DOI: 10.7717/peerj.13821 |
0.341 |
|
| 2022 |
Karthikeyan S, Levy JI, De Hoff P, Humphrey G, Birmingham A, Jepsen K, Farmer S, Tubb HM, Valles T, Tribelhorn CE, Tsai R, Aigner S, Sathe S, Moshiri N, Henson B, ... ... Park D, et al. Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission. Nature. PMID 35798029 DOI: 10.1038/s41586-022-05049-6 |
0.385 |
|
| 2022 |
Obermeyer F, Jankowiak M, Barkas N, Schaffner SF, Pyle JD, Yurkovetskiy L, Bosso M, Park DJ, Babadi M, MacInnis BL, Luban J, Sabeti PC, Lemieux JE. Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness. Science (New York, N.Y.). abm1208. PMID 35608456 DOI: 10.1126/science.abm1208 |
0.515 |
|
| 2022 |
Earnest R, Uddin R, Matluk N, Renzette N, Turbett SE, Siddle KJ, Loreth C, Adams G, Tomkins-Tinch CH, Petrone ME, Rothman JE, Breban MI, Koch RT, Billig K, Fauver JR, ... ... Park DJ, et al. Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA. Cell Reports. Medicine. 3: 100583. PMID 35480627 DOI: 10.1016/j.xcrm.2022.100583 |
0.499 |
|
| 2022 |
Karthikeyan S, Levy JI, De Hoff P, Humphrey G, Birmingham A, Jepsen K, Farmer S, Tubb HM, Valles T, Tribelhorn CE, Tsai R, Aigner S, Sathe S, Moshiri N, Henson B, ... ... Park D, et al. Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission. Medrxiv : the Preprint Server For Health Sciences. PMID 35411350 DOI: 10.1101/2021.12.21.21268143 |
0.385 |
|
| 2022 |
Obermeyer F, Jankowiak M, Barkas N, Schaffner SF, Pyle JD, Yurkovetskiy L, Bosso M, Park DJ, Babadi M, MacInnis BL, Luban J, Sabeti PC, Lemieux JE. Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness. Medrxiv : the Preprint Server For Health Sciences. PMID 35194619 DOI: 10.1101/2021.09.07.21263228 |
0.516 |
|
| 2022 |
Welch NL, Zhu M, Hua C, Weller J, Mirhashemi ME, Nguyen TG, Mantena S, Bauer MR, Shaw BM, Ackerman CM, Thakku SG, Tse MW, Kehe J, Uwera MM, Eversley JS, ... ... Park DJ, et al. Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants. Nature Medicine. PMID 35130561 DOI: 10.1038/s41591-022-01734-1 |
0.567 |
|
| 2021 |
Siddle KJ, Krasilnikova LA, Moreno GK, Schaffner SF, Vostok J, Fitzgerald NA, Lemieux JE, Barkas N, Loreth C, Specht I, Tomkins-Tinch CH, Paull JS, Schaeffer B, Taylor BP, Loftness B, ... ... Park DJ, et al. Transmission from vaccinated individuals in a large SARS-CoV-2 Delta variant outbreak. Cell. PMID 35051367 DOI: 10.1016/j.cell.2021.12.027 |
0.511 |
|
| 2021 |
Lagerborg KA, Normandin E, Bauer MR, Adams G, Figueroa K, Loreth C, Gladden-Young A, Shaw BM, Pearlman LR, Berenzy D, Dewey HB, Kales S, Dobbins ST, Shenoy ES, Hooper D, ... ... Park DJ, et al. Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows. Nature Microbiology. PMID 34907347 DOI: 10.1038/s41564-021-01019-2 |
0.567 |
|
| 2021 |
Siddle KJ, Krasilnikova LA, Moreno GK, Schaffner SF, Vostok J, Fitzgerald NA, Lemieux JE, Barkas N, Loreth C, Specht I, Tomkins-Tinch CH, Silbert J, Schaeffer B, Taylor BP, Loftness B, ... ... Park DJ, et al. Evidence of transmission from fully vaccinated individuals in a large outbreak of the SARS-CoV-2 Delta variant in Provincetown, Massachusetts. Medrxiv : the Preprint Server For Health Sciences. PMID 34704102 DOI: 10.1101/2021.10.20.21265137 |
0.55 |
|
| 2021 |
Earnest R, Uddin R, Matluk N, Renzette N, Siddle KJ, Loreth C, Adams G, Tomkins-Tinch CH, Petrone ME, Rothman JE, Breban MI, Koch RT, Billig K, Fauver JR, Vogels CBF, ... ... Park DJ, et al. Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA. Medrxiv : the Preprint Server For Health Sciences. PMID 34642698 DOI: 10.1101/2021.10.06.21264641 |
0.506 |
|
| 2021 |
Piantadosi A, Mukerji SS, Ye S, Leone MJ, Freimark LM, Park D, Adams G, Lemieux J, Kanjilal S, Solomon IH, Ahmed AA, Goldstein R, Ganesh V, Ostrem B, Cummins KC, et al. Enhanced Virus Detection and Metagenomic Sequencing in Patients with Meningitis and Encephalitis. Mbio. 12: e0114321. PMID 34465023 DOI: 10.1128/mBio.01143-21 |
0.554 |
|
| 2021 |
Botti-Lodovico Y, Nair P, Nosamiefan D, Stremlau M, Schaffner S, Agignoae SV, Aiyepada JO, Ajogbasile FV, Akpede GO, Alhasan F, Andersen KG, Asogun DA, Ayodeji OO, Badiane AS, Barnes K, ... ... Park DJ, et al. The Origins and Future of Sentinel: An Early-Warning System for Pandemic Preemption and Response. Viruses. 13. PMID 34452470 DOI: 10.3390/v13081605 |
0.554 |
|
| 2021 |
Gaye A, Ndiaye T, Sy M, Deme AB, Thiaw AB, Sene A, Ndiaye C, Diedhiou Y, Mbaye AM, Ndiaye I, Tomkins-Tinch C, Gomis JF, Badiane AS, MacInnis B, Park DJ, et al. Genomic investigation of a dengue virus outbreak in Thiès, Senegal, in 2018. Scientific Reports. 11: 10321. PMID 33990632 DOI: 10.1038/s41598-021-89070-1 |
0.632 |
|
| 2021 |
Tomkins-Tinch CH, Daly JS, Gladden-Young A, Theodoropoulos NM, Madaio MP, Yu N, Vanguri VK, Siddle KJ, Adams G, Krasilnikova LA, Movahedi B, Bozorgzadeh A, Simin K, Lemieux JE, Luban J, ... Park DJ, et al. SARS-CoV-2 Reinfection in a Liver Transplant Recipient. Annals of Internal Medicine. PMID 33872044 DOI: 10.7326/L21-0108 |
0.377 |
|
| 2021 |
Lagerborg KA, Normandin E, Bauer MR, Adams G, Figueroa K, Loreth C, Gladden-Young A, Shaw B, Pearlman L, Shenoy ES, Hooper D, Pierce VM, Zachary KC, Park DJ, MacInnis BL, et al. DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencing. Biorxiv : the Preprint Server For Biology. PMID 33758855 DOI: 10.1101/2021.03.16.435654 |
0.566 |
|
| 2020 |
Lemieux JE, Siddle KJ, Shaw BM, Loreth C, Schaffner SF, Gladden-Young A, Adams G, Fink T, Tomkins-Tinch CH, Krasilnikova LA, DeRuff KC, Rudy M, Bauer MR, Lagerborg KA, Normandin E, ... ... Park DJ, et al. Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events. Science (New York, N.Y.). PMID 33303686 DOI: 10.1126/science.abe3261 |
0.554 |
|
| 2020 |
Normandin E, Solomon IH, Zamirpour S, Lemieux J, Freije CA, Mukerji SS, Tomkins-Tinch C, Park D, Sabeti PC, Piantadosi A. Powassan Virus Neuropathology and Genomic Diversity in Patients With Fatal Encephalitis. Open Forum Infectious Diseases. 7: ofaa392. PMID 33094116 DOI: 10.1093/Ofid/Ofaa392 |
0.611 |
|
| 2020 |
Lemieux J, Siddle KJ, Shaw BM, Loreth C, Schaffner S, Gladden-Young A, Adams G, Fink T, Tomkins-Tinch CH, Krasilnikova LA, Deruff KC, Rudy M, Bauer MR, Lagerborg KA, Normandin E, ... ... Park DJ, et al. Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events. Medrxiv : the Preprint Server For Health Sciences. PMID 32869040 DOI: 10.1101/2020.08.23.20178236 |
0.553 |
|
| 2020 |
Barnes KG, Lachenauer AE, Nitido A, Siddiqui S, Gross R, Beitzel B, Siddle KJ, Freije CA, Dighero-Kemp B, Mehta SB, Carter A, Uwanibe J, Ajogbasile F, Olumade T, Odia I, ... ... Park DJ, et al. Deployable CRISPR-Cas13a diagnostic tools to detect and report Ebola and Lassa virus cases in real-time. Nature Communications. 11: 4131. PMID 32807807 DOI: 10.1038/S41467-020-17994-9 |
0.587 |
|
| 2020 |
Gaye A, Sy M, Ndiaye T, Siddle KJ, Park DJ, Deme AB, Mbaye A, Dieye B, Ndiaye YD, Neafsey DE, Early A, Farrell T, Yade MS, Diallo MA, Diongue K, et al. Amplicon deep sequencing of kelch13 in Plasmodium falciparum isolates from Senegal. Malaria Journal. 19: 134. PMID 32228566 DOI: 10.1186/S12936-020-03193-W |
0.36 |
|
| 2020 |
Wohl S, Metsky HC, Schaffner SF, Piantadosi A, Burns M, Lewnard JA, Chak B, Krasilnikova LA, Siddle KJ, Matranga CB, Bankamp B, Hennigan S, Sabina B, Byrne EH, McNall RJ, ... ... Park DJ, et al. Combining genomics and epidemiology to track mumps virus transmission in the United States. Plos Biology. 18: e3000611. PMID 32045407 DOI: 10.1371/Journal.Pbio.3000611 |
0.639 |
|
| 2019 |
Ye SH, Siddle KJ, Park DJ, Sabeti PC. Benchmarking Metagenomics Tools for Taxonomic Classification. Cell. 178: 779-794. PMID 31398336 DOI: 10.1016/J.Cell.2019.07.010 |
0.529 |
|
| 2019 |
Metsky HC, Siddle KJ, Gladden-Young A, Qu J, Yang DK, Brehio P, Goldfarb A, Piantadosi A, Wohl S, Carter A, Lin AE, Barnes KG, Tully DC, Corleis B, Hennigan S, ... ... Park DJ, et al. Capturing sequence diversity in metagenomes with comprehensive and scalable probe design. Nature Biotechnology. 37: 160-168. PMID 30718881 DOI: 10.1038/S41587-018-0006-X |
0.62 |
|
| 2018 |
Piantadosi A, Freije CA, Gosmann C, Ye S, Park D, Schaffner SF, Tully DC, Allen TM, Dong KL, Sabeti PC, Kwon DS. Metagenomic sequencing of HIV-1 in the blood and female genital tract reveals little quasispecies diversity during acute infection. Journal of Virology. PMID 30381486 DOI: 10.1128/Jvi.00804-18 |
0.537 |
|
| 2018 |
Siddle KJ, Eromon P, Barnes KG, Mehta S, Oguzie JU, Odia I, Schaffner SF, Winnicki SM, Shah RR, Qu J, Wohl S, Brehio P, Iruolagbe C, Aiyepada J, Uyigue E, ... ... Park DJ, et al. Genomic Analysis of Lassa Virus during an Increase in Cases in Nigeria in 2018. The New England Journal of Medicine. PMID 30332564 DOI: 10.1056/Nejmoa1804498 |
0.647 |
|
| 2018 |
Choi K, Ryu H, Siddle KJ, Piantadosi A, Freimark L, Park DJ, Sabeti P, Han J. Negative Selection by Spiral Inertial Microfluidics Improves Viral Recovery and Sequencing from Blood. Analytical Chemistry. PMID 29536737 DOI: 10.1021/Acs.Analchem.7B05200 |
0.587 |
|
| 2018 |
Piantadosi A, Mukerji S, Ye S, Lemieux J, Friemark L, Park D, Adams G, Leone M, Goldberg M, Cho T, Rosenberg E, Sabeti P. A53 Systematic application of metagenomics NGS to identify and sequence viral pathogens in infections of the central nervous system Virus Evolution. 4. DOI: 10.1093/Ve/Vey010.052 |
0.562 |
|
| 2017 |
Metsky HC, Matranga CB, Wohl S, Schaffner SF, Freije CA, Winnicki SM, West K, Qu J, Baniecki ML, Gladden-Young A, Lin AE, Tomkins-Tinch CH, Ye SH, Park DJ, Luo CY, et al. Zika virus evolution and spread in the Americas. Nature. PMID 28538734 DOI: 10.1038/Nature22402 |
0.662 |
|
| 2017 |
Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, ... ... Park DJ, et al. Genomic epidemiology reveals multiple introductions of Zika virus into the United States. Nature. PMID 28538723 DOI: 10.1038/Nature22400 |
0.644 |
|
| 2017 |
Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, Park DJ, Ladner JT, Arias A, Asogun D, Bielejec F, Caddy SL, Cotten M, D'Ambrozio J, Dellicour S, et al. Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nature. PMID 28405027 DOI: 10.1038/Nature22040 |
0.62 |
|
| 2016 |
Rambaut A, Dudas G, de Carvalho LM, Park DJ, Yozwiak NL, Holmes EC, Andersen KG. Comment on "Mutation rate and genotype variation of Ebola virus from Mali case sequences". Science (New York, N.Y.). 353: 658. PMID 27516592 DOI: 10.1126/Science.Aaf3823 |
0.361 |
|
| 2016 |
Goba A, Khan SH, Fonnie M, Fullah M, Moigboi A, Kovoma A, Sinnah V, Yoko N, Rogers H, Safai S, Momoh M, Koroma V, Kamara FK, Konowu E, Yillah M, ... ... Park DJ, et al. An Outbreak of Ebola Virus Disease in the Lassa Fever Zone. The Journal of Infectious Diseases. PMID 27402779 DOI: 10.1093/Infdis/Jiw239 |
0.572 |
|
| 2016 |
Folarin OA, Ehichioya D, Schaffner SF, Winnicki SM, Wohl S, Eromon P, West KL, Gladden-Young A, Oyejide NE, Matranga CB, Deme AB, James A, Tomkins-Tinch C, Onyewurunwa K, Ladner JT, ... ... Park DJ, et al. Ebola Virus Epidemiology and Evolution in Nigeria. The Journal of Infectious Diseases. PMID 27377746 DOI: 10.1093/Infdis/Jiw190 |
0.646 |
|
| 2015 |
Ladner JT, Wiley MR, Mate S, Dudas G, Prieto K, Lovett S, Nagle ER, Beitzel B, Gilbert ML, Fakoli L, Diclaro JW, Schoepp RJ, Fair J, Kuhn JH, Hensley LE, ... Park DJ, et al. Evolution and Spread of Ebola Virus in Liberia, 2014-2015. Cell Host & Microbe. 18: 659-669. PMID 26651942 DOI: 10.1016/J.Chom.2015.11.008 |
0.644 |
|
| 2015 |
Park DJ, Dudas G, Wohl S, Goba A, Whitmer SL, Andersen KG, Sealfon RS, Ladner JT, Kugelman JR, Matranga CB, Winnicki SM, Qu J, Gire SK, Gladden-Young A, Jalloh S, et al. Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone. Cell. 161: 1516-26. PMID 26091036 DOI: 10.1016/J.Cell.2015.06.007 |
0.65 |
|
| 2015 |
Kugelman JR, Wiley MR, Mate S, Ladner JT, Beitzel B, Fakoli L, Taweh F, Prieto K, Diclaro JW, Minogue T, Schoepp RJ, Schaecher KE, Pettitt J, Bateman S, Fair J, ... ... Park DJ, et al. Monitoring of Ebola Virus Makona Evolution through Establishment of Advanced Genomic Capability in Liberia. Emerging Infectious Diseases. 21: 1135-43. PMID 26079255 DOI: 10.3201/Eid2107.150522 |
0.627 |
|
| 2015 |
Baniecki ML, Faust AL, Schaffner SF, Park DJ, Galinsky K, Daniels RF, Hamilton E, Ferreira MU, Karunaweera ND, Serre D, Zimmerman PA, Sá JM, Wellems TE, Musset L, Legrand E, et al. Development of a single nucleotide polymorphism barcode to genotype Plasmodium vivax infections. Plos Neglected Tropical Diseases. 9: e0003539. PMID 25781890 DOI: 10.1371/Journal.Pntd.0003539 |
0.599 |
|
| 2015 |
Kugelman JR, Sanchez-Lockhart M, Andersen KG, Gire S, Park DJ, Sealfon R, Lin AE, Wohl S, Sabeti PC, Kuhn JH, Palacios GF. Evaluation of the potential impact of Ebola virus genomic drift on the efficacy of sequence-based candidate therapeutics. Mbio. 6. PMID 25604787 DOI: 10.1128/Mbio.02227-14 |
0.616 |
|
| 2014 |
Kuhn JH, Andersen KG, Baize S, Bào Y, Bavari S, Berthet N, Blinkova O, Brister JR, Clawson AN, Fair J, Gabriel M, Garry RF, Gire SK, Goba A, Gonzalez JP, ... ... Park DJ, et al. Nomenclature- and database-compatible names for the two Ebola virus variants that emerged in Guinea and the Democratic Republic of the Congo in 2014. Viruses. 6: 4760-99. PMID 25421896 DOI: 10.3390/V6114760 |
0.642 |
|
| 2014 |
Schieffelin JS, Shaffer JG, Goba A, Gbakie M, Gire SK, Colubri A, Sealfon RS, Kanneh L, Moigboi A, Momoh M, Fullah M, Moses LM, Brown BL, Andersen KG, Winnicki S, ... ... Park DJ, et al. Clinical illness and outcomes in patients with Ebola in Sierra Leone. The New England Journal of Medicine. 371: 2092-100. PMID 25353969 DOI: 10.1056/NEJMoa1411680 |
0.494 |
|
| 2014 |
Kuhn JH, Andersen KG, Bào Y, Bavari S, Becker S, Bennett RS, Bergman NH, Blinkova O, Bradfute S, Brister JR, Bukreyev A, Chandran K, Chepurnov AA, Davey RA, Dietzgen RG, ... ... Park DJ, et al. Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names. Viruses. 6: 3663-82. PMID 25256396 DOI: 10.3390/V6093663 |
0.613 |
|
| 2014 |
Gire SK, Goba A, Andersen KG, Sealfon RS, Park DJ, Kanneh L, Jalloh S, Momoh M, Fullah M, Dudas G, Wohl S, Moses LM, Yozwiak NL, Winnicki S, Matranga CB, et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science (New York, N.Y.). 345: 1369-72. PMID 25214632 DOI: 10.1126/Science.1259657 |
0.65 |
|
| 2014 |
Deme AB, Park DJ, Bei AK, Sarr O, Badiane AS, Gueye Pel H, Ahouidi A, Ndir O, Mboup S, Wirth DF, Ndiaye D, Volkman SK. Analysis of pfhrp2 genetic diversity in Senegal and implications for use of rapid diagnostic tests. Malaria Journal. 13: 34. PMID 24472178 DOI: 10.1186/1475-2875-13-34 |
0.34 |
|
| 2013 |
Chang HH, Moss EL, Park DJ, Ndiaye D, Mboup S, Volkman SK, Sabeti PC, Wirth DF, Neafsey DE, Hartl DL. Malaria life cycle intensifies both natural selection and random genetic drift. Proceedings of the National Academy of Sciences of the United States of America. 110: 20129-34. PMID 24259712 DOI: 10.1073/Pnas.1319857110 |
0.542 |
|
| 2013 |
Grossman SR, Andersen KG, Shlyakhter I, Tabrizi S, Winnicki S, Yen A, Park DJ, Griesemer D, Karlsson EK, Wong SH, Cabili M, Adegbola RA, Bamezai RN, Hill AV, Vannberg FO, et al. Identifying recent adaptations in large-scale genomic data. Cell. 152: 703-13. PMID 23415221 DOI: 10.1016/J.Cell.2013.01.035 |
0.595 |
|
| 2012 |
Park DJ, Lukens AK, Neafsey DE, Schaffner SF, Chang HH, Valim C, Ribacke U, Van Tyne D, Galinsky K, Galligan M, Becker JS, Ndiaye D, Mboup S, Wiegand RC, Hartl DL, et al. Sequence-based association and selection scans identify drug resistance loci in the Plasmodium falciparum malaria parasite. Proceedings of the National Academy of Sciences of the United States of America. 109: 13052-7. PMID 22826220 DOI: 10.1073/Pnas.1210585109 |
0.598 |
|
| 2012 |
Chang HH, Park DJ, Galinsky KJ, Schaffner SF, Ndiaye D, Ndir O, Mboup S, Wiegand RC, Volkman SK, Sabeti PC, Wirth DF, Neafsey DE, Hartl DL. Genomic sequencing of Plasmodium falciparum malaria parasites from Senegal reveals the demographic history of the population. Molecular Biology and Evolution. 29: 3427-39. PMID 22734050 DOI: 10.1093/Molbev/Mss161 |
0.586 |
|
| 2012 |
Amambua-Ngwa A, Park DJ, Volkman SK, Barnes KG, Bei AK, Lukens AK, Sene P, Van Tyne D, Ndiaye D, Wirth DF, Conway DJ, Neafsey DE, Schaffner SF. SNP genotyping identifies new signatures of selection in a deep sample of West African Plasmodium falciparum malaria parasites. Molecular Biology and Evolution. 29: 3249-53. PMID 22688945 DOI: 10.1093/Molbev/Mss151 |
0.381 |
|
| 2012 |
Volkman SK, Neafsey DE, Schaffner SF, Park DJ, Wirth DF. Harnessing genomics and genome biology to understand malaria biology. Nature Reviews. Genetics. 13: 315-28. PMID 22495435 DOI: 10.1038/Nrg3187 |
0.416 |
|
| 2012 |
Milner DA, Vareta J, Valim C, Montgomery J, Daniels RF, Volkman SK, Neafsey DE, Park DJ, Schaffner SF, Mahesh NC, Barnes KG, Rosen DM, Lukens AK, Van Tyne D, Wiegand RC, et al. Human cerebral malaria and Plasmodium falciparum genotypes in Malawi. Malaria Journal. 11: 35. PMID 22314206 DOI: 10.1186/1475-2875-11-35 |
0.55 |
|
| 2012 |
Volkman SK, Ndiaye D, Diakite M, Koita OA, Nwakanma D, Daniels RF, Park DJ, Neafsey DE, Muskavitch MA, Krogstad DJ, Sabeti PC, Hartl DL, Wirth DF. Application of genomics to field investigations of malaria by the international centers of excellence for malaria research. Acta Tropica. 121: 324-32. PMID 22182668 DOI: 10.1016/J.Actatropica.2011.12.002 |
0.593 |
|
| 2011 |
Broadbent KM, Park D, Wolf AR, Van Tyne D, Sims JS, Ribacke U, Volkman S, Duraisingh M, Wirth D, Sabeti PC, Rinn JL. A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs. Genome Biology. 12: R56. PMID 21689454 DOI: 10.1186/Gb-2011-12-6-R56 |
0.685 |
|
| 2011 |
Van Tyne D, Park DJ, Schaffner SF, Neafsey DE, Angelino E, Cortese JF, Barnes KG, Rosen DM, Lukens AK, Daniels RF, Milner DA, Johnson CA, Shlyakhter I, Grossman SR, Becker JS, et al. Identification and functional validation of the novel antimalarial resistance locus PF10_0355 in Plasmodium falciparum. Plos Genetics. 7: e1001383. PMID 21533027 DOI: 10.1371/Journal.Pgen.1001383 |
0.595 |
|
| 2010 |
Neafsey DE, Lawniczak MK, Park DJ, Redmond SN, Coulibaly MB, Traoré SF, Sagnon N, Costantini C, Johnson C, Wiegand RC, Collins FH, Lander ES, Wirth DF, Kafatos FC, Besansky NJ, et al. SNP genotyping defines complex gene-flow boundaries among African malaria vector mosquitoes. Science (New York, N.Y.). 330: 514-7. PMID 20966254 DOI: 10.1126/Science.1193036 |
0.412 |
|
| 2010 |
Neafsey DE, Barker BM, Sharpton TJ, Stajich JE, Park DJ, Whiston E, Hung CY, McMahan C, White J, Sykes S, Heiman D, Young S, Zeng Q, Abouelleil A, Aftuck L, et al. Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control. Genome Research. 20: 938-46. PMID 20516208 DOI: 10.1101/Gr.103911.109 |
0.447 |
|
| 2009 |
Lambreghts R, Shi M, Belden WJ, Decaprio D, Park D, Henn MR, Galagan JE, Bastürkmen M, Birren BW, Sachs MS, Dunlap JC, Loros JJ. A high-density single nucleotide polymorphism map for Neurospora crassa. Genetics. 181: 767-81. PMID 19015548 DOI: 10.1534/Genetics.108.089292 |
0.326 |
|
| 2008 |
Neafsey DE, Schaffner SF, Volkman SK, Park D, Montgomery P, Milner DA, Lukens A, Rosen D, Daniels R, Houde N, Cortese JF, Tyndall E, Gates C, Stange-Thomann N, Sarr O, et al. Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparum population divergence. Genome Biology. 9: R171. PMID 19077304 DOI: 10.1186/Gb-2008-9-12-R171 |
0.591 |
|
| 2008 |
Daniels R, Volkman SK, Milner DA, Mahesh N, Neafsey DE, Park DJ, Rosen D, Angelino E, Sabeti PC, Wirth DF, Wiegand RC. A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking. Malaria Journal. 7: 223. PMID 18959790 DOI: 10.1186/1475-2875-7-223 |
0.548 |
|
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