| Year |
Citation |
Score |
| 2022 |
Akatay AA, Wu T, Djakbarova U, Thompson C, Cocucci E, Zandi R, Rudnick J, Kural C. Endocytosis at extremes: Formation and internalization of giant clathrin-coated pits under elevated membrane tension. Frontiers in Molecular Biosciences. 9: 959737. PMID 36213118 DOI: 10.3389/fmolb.2022.959737 |
0.478 |
|
| 2022 |
Panahandeh S, Li S, Dragnea B, Zandi R. Virus Assembly Pathways Inside a Host Cell. Acs Nano. PMID 35019271 DOI: 10.1021/acsnano.1c06335 |
0.321 |
|
| 2020 |
Dong Y, Li S, Zandi R. Effect of the charge distribution of virus coat proteins on the length of packaged RNAs. Physical Review. E. 102: 062423. PMID 33466113 DOI: 10.1103/PhysRevE.102.062423 |
0.338 |
|
| 2020 |
Panahandeh S, Li S, Marichal L, Leite Rubim R, Tresset G, Zandi R. How a Virus Circumvents Energy Barriers to Form Symmetric Shells. Acs Nano. PMID 32115940 DOI: 10.1021/Acsnano.9B08354 |
0.369 |
|
| 2020 |
Chen S, Xu J, Liu M, Rao ALN, Zandi R, Gill SS, Mohideen U. Investigation of HIV-1 Gag binding with RNAs and lipids using Atomic Force Microscopy. Plos One. 15: e0228036. PMID 32015565 DOI: 10.1371/Journal.Pone.0228036 |
0.364 |
|
| 2020 |
Zandi R, Dragnea B, Travesset A, Podgornik R. On virus growth and form Physics Reports. 847: 1-102. DOI: 10.1016/J.Physrep.2019.12.005 |
0.381 |
|
| 2018 |
Liu M, Xu J, Zandi R, Mohideen U. Measurement of entropic force from polymers attached to a pyramidal tip. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 31: 075102. PMID 30524055 DOI: 10.1088/1361-648X/Aaf51A |
0.349 |
|
| 2018 |
Panahandeh S, Li S, Zandi R. The equilibrium structure of self-assembled protein nano-cages. Nanoscale. 10: 22802-22809. PMID 30516220 DOI: 10.1039/C8Nr07202G |
0.321 |
|
| 2018 |
Li S, Roy P, Travesset A, Zandi R. Why large icosahedral viruses need scaffolding proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 30301797 DOI: 10.1073/Pnas.1807706115 |
0.396 |
|
| 2018 |
van der Holst B, Kegel WK, Zandi R, van der Schoot P. The different faces of mass action in virus assembly. Journal of Biological Physics. PMID 29616429 DOI: 10.1007/S10867-018-9487-6 |
0.418 |
|
| 2018 |
Li S, Orland H, Zandi R. Self consistent field theory of virus assembly. Journal of Physics. Condensed Matter : An Institute of Physics Journal. PMID 29460850 DOI: 10.1088/1361-648X/Aab0C6 |
0.429 |
|
| 2017 |
Li S, Erdemci-Tandogan G, van der Schoot P, Zandi R. The effect of RNA stiffness on the self-assembly of virus particles. Journal of Physics. Condensed Matter : An Institute of Physics Journal. PMID 29235442 DOI: 10.1088/1361-648X/Aaa159 |
0.76 |
|
| 2017 |
Erdemci-Tandogan G, Orland H, Zandi R. RNA Base Pairing Determines the Conformations of RNA Inside Spherical Viruses. Physical Review Letters. 119: 188102. PMID 29219580 DOI: 10.1103/Physrevlett.119.188102 |
0.749 |
|
| 2017 |
Li S, Erdemci-Tandogan G, Wagner J, van der Schoot P, Zandi R. Impact of a nonuniform charge distribution on virus assembly. Physical Review. E. 96: 022401. PMID 28950450 DOI: 10.1103/Physreve.96.022401 |
0.75 |
|
| 2017 |
Zeng C, Hernando-Pérez M, Dragnea B, Ma X, van der Schoot P, Zandi R. Contact Mechanics of a Small Icosahedral Virus. Physical Review Letters. 119: 038102. PMID 28777631 DOI: 10.1103/Physrevlett.119.038102 |
0.36 |
|
| 2016 |
Ning J, Erdemci-Tandogan G, Yufenyuy EL, Wagner J, Himes BA, Zhao G, Aiken C, Zandi R, Zhang P. In vitro protease cleavage and computer simulations reveal the HIV-1 capsid maturation pathway. Nature Communications. 7: 13689. PMID 27958264 DOI: 10.1038/Ncomms13689 |
0.72 |
|
| 2016 |
Erdemci-Tandogan G, Wagner J, van der Schoot P, Podgornik R, Zandi R. Effects of RNA branching on the electrostatic stabilization of viruses. Physical Review. E. 94: 022408. PMID 27627336 DOI: 10.1103/Physreve.94.022408 |
0.762 |
|
| 2016 |
Paquay S, Kusumaatmaja H, Wales DJ, Zandi R, van der Schoot P. Energetically favoured defects in dense packings of particles on spherical surfaces. Soft Matter. PMID 27263532 DOI: 10.1039/C6Sm00489J |
0.315 |
|
| 2016 |
Sivanandam V, Mathews D, Garmann R, Erdemci-Tandogan G, Zandi R, Rao AL. Functional analysis of the N-terminal basic motif of a eukaryotic satellite RNA virus capsid protein in replication and packaging. Scientific Reports. 6: 26328. PMID 27193742 DOI: 10.1038/Srep26328 |
0.754 |
|
| 2016 |
Erdemci-Tandogan G, Wagner J, van der Schoot P, Zandi R. The Role of Genome in the Formation of Conical Retroviral Shells. The Journal of Physical Chemistry. B. PMID 27128962 DOI: 10.1021/Acs.Jpcb.6B02712 |
0.753 |
|
| 2016 |
Hagan MF, Zandi R. Recent advances in coarse-grained modeling of virus assembly. Current Opinion in Virology. 18: 36-43. PMID 27016708 DOI: 10.1016/J.Coviro.2016.02.012 |
0.337 |
|
| 2016 |
Wagner J, Zandi R. The Irreversible Assembly of Small Symmetric Nanoshells Biophysical Journal. 110: 168a. DOI: 10.1016/J.Bpj.2015.11.934 |
0.324 |
|
| 2015 |
Wagner J, Erdemci-Tandogan G, Zandi R. Adsorption of annealed branched polymers on curved surfaces. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 27: 495101. PMID 26574170 DOI: 10.1088/0953-8984/27/49/495101 |
0.723 |
|
| 2015 |
Wagner J, Zandi R. The Robust Assembly of Small Symmetric Nanoshells. Biophysical Journal. 109: 956-65. PMID 26331253 DOI: 10.1016/J.Bpj.2015.07.041 |
0.339 |
|
| 2015 |
Kusters R, Lin HK, Zandi R, Tsvetkova I, Dragnea B, van der Schoot P. Role of charge regulation and size polydispersity in nanoparticle encapsulation by viral coat proteins. The Journal of Physical Chemistry. B. 119: 1869-80. PMID 25562399 DOI: 10.1021/Jp5108125 |
0.355 |
|
| 2015 |
Gui D, Gupta S, Xu J, Zandi R, Gill S, Huang IC, Rao AL, Mohideen U. A novel minimal in vitro system for analyzing HIV-1 Gag-mediated budding. Journal of Biological Physics. 41: 135-49. PMID 25515930 DOI: 10.1007/S10867-014-9370-Z |
0.343 |
|
| 2015 |
Rodriguez-Lopez P, Emig T, Noruzifar E, Zandi R. Effect of curvature and confinement on the Casimir-Polder interaction Physical Review A. 91. DOI: 10.1103/Physreva.91.012516 |
0.319 |
|
| 2014 |
Ando D, Zandi R, Kim YW, Colvin M, Rexach M, Gopinathan A. Nuclear pore complex protein sequences determine overall copolymer brush structure and function. Biophysical Journal. 106: 1997-2007. PMID 24806932 DOI: 10.1016/J.Bpj.2014.03.021 |
0.305 |
|
| 2014 |
Erdemci-Tandogan G, Wagner J, van der Schoot P, Podgornik R, Zandi R. RNA topology remolds electrostatic stabilization of viruses. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 89: 032707. PMID 24730874 DOI: 10.1103/Physreve.89.032707 |
0.76 |
|
| 2014 |
Banishev AA, Wagner J, Emig T, Zandi R, Mohideen U. Experimental and theoretical investigation of the angular dependence of the Casimir force between sinusoidally corrugated surfaces Physical Review B - Condensed Matter and Materials Physics. 89. DOI: 10.1103/Physrevb.89.235436 |
0.364 |
|
| 2014 |
Wagner J, Zandi R. Calculating Casimir interactions for periodic surface-relief gratings using the C method Physical Review a - Atomic, Molecular, and Optical Physics. 90. DOI: 10.1103/Physreva.90.012516 |
0.341 |
|
| 2013 |
Noruzifar E, Wagner J, Zandi R. Scattering approach for fluctuation-induced interactions at fluid interfaces. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 042314. PMID 24229179 DOI: 10.1103/Physreve.88.042314 |
0.328 |
|
| 2013 |
Van Der Schoot P, Zandi R. Impact of the topology of viral RNAs on their encapsulation by virus coat proteins Journal of Biological Physics. 39: 289-299. PMID 23860874 DOI: 10.1007/S10867-013-9307-Y |
0.407 |
|
| 2013 |
Noruzifar E, Wagner J, Zandi R. Three-body fluctuation-induced interaction at fluid interfaces: a strong deviation from the pairwise summation. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 87: 020301. PMID 23496444 DOI: 10.1103/Physreve.87.020301 |
0.311 |
|
| 2013 |
Yu Z, Dobro MJ, Woodward CL, Levandovsky A, Danielson CM, Sandrin V, Shi J, Aiken C, Zandi R, Hope TJ, Jensen GJ. Unclosed HIV-1 capsids suggest a curled sheet model of assembly. Journal of Molecular Biology. 425: 112-23. PMID 23079241 DOI: 10.1016/J.Jmb.2012.10.006 |
0.36 |
|
| 2013 |
Noruzifar E, Rodriguez-Lopez P, Emig T, Zandi R. Material dependence of the wire-particle Casimir interaction Physical Review a - Atomic, Molecular, and Optical Physics. 87. DOI: 10.1103/Physreva.87.042504 |
0.31 |
|
| 2012 |
Lin HK, Van Der Schoot P, Zandi R. Impact of charge variation on the encapsulation of nanoparticles by virus coat proteins Physical Biology. 9. PMID 23114290 DOI: 10.1088/1478-3975/9/6/066004 |
0.344 |
|
| 2012 |
Chayes L, Rudnick J, Shackell A, Zandi R. On the thinning of films (I) Physica a: Statistical Mechanics and Its Applications. 391: 2353-2380. DOI: 10.1016/J.Physa.2011.07.002 |
0.704 |
|
| 2011 |
Lin HK, Zandi R, Mohideen U, Pryadko LP. Fluctuation-induced forces between inclusions in a fluid membrane under tension. Physical Review Letters. 107: 228104. PMID 22182045 DOI: 10.1103/Physrevlett.107.228104 |
0.317 |
|
| 2010 |
Rudnick J, Zandi R, Shackell A, Abraham D. Boundary conditions and the critical Casimir force on an Ising model film: exact results in one and two dimensions. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 82: 041118. PMID 21230249 DOI: 10.1103/Physreve.82.041118 |
0.716 |
|
| 2010 |
Siber A, Zandi R, Podgornik R. Thermodynamics of nanospheres encapsulated in virus capsids. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 81: 051919. PMID 20866273 DOI: 10.1103/Physreve.81.051919 |
0.348 |
|
| 2010 |
Luque A, Zandi R, Reguera D. Optimal architectures of elongated viruses. Proceedings of the National Academy of Sciences of the United States of America. 107: 5323-8. PMID 20212146 DOI: 10.1073/Pnas.0915122107 |
0.361 |
|
| 2010 |
Zandi R, Emig T, Mohideen U. Quantum and thermal Casimir interaction between a sphere and a plate: Comparison of Drude and plasma models Physical Review B - Condensed Matter and Materials Physics. 81. DOI: 10.1103/Physrevb.81.195423 |
0.33 |
|
| 2010 |
Gopinathan A, Kim YW, Zandi R, Colvin M, Rexach M. Polymer Brushes and the Nuclear Pore Complex Biophysical Journal. 98: 308a. DOI: 10.1016/J.Bpj.2009.12.1676 |
0.318 |
|
| 2009 |
Levandovsky A, Zandi R. Nonequilibirum assembly, retroviruses, and conical structures. Physical Review Letters. 102: 198102. PMID 19518999 DOI: 10.1103/Physrevlett.102.198102 |
0.332 |
|
| 2009 |
Zandi R, Van Der Schoot P. Size regulation of ss-RNA viruses Biophysical Journal. 96: 9-20. PMID 18931258 DOI: 10.1529/Biophysj.108.137489 |
0.365 |
|
| 2008 |
Hu Y, Zandi R, Anavitarte A, Knobler CM, Gelbart WM. Packaging of a polymer by a viral capsid: the interplay between polymer length and capsid size. Biophysical Journal. 94: 1428-36. PMID 17981893 DOI: 10.1529/Biophysj.107.117473 |
0.334 |
|
| 2007 |
Van Der Schoot P, Zandi R. Kinetic theory of virus capsid assembly Physical Biology. 4: 296-304. PMID 18185007 DOI: 10.1088/1478-3975/4/4/006 |
0.347 |
|
| 2007 |
Zandi R, Shackell A, Rudnick J, Kardar M, Chayes LP. Thinning of superfluid films below the critical point. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 030601. PMID 17930191 DOI: 10.1103/Physreve.76.030601 |
0.72 |
|
| 2006 |
Zandi R, van der Schoot P, Reguera D, Kegel W, Reiss H. Classical nucleation theory of virus capsids. Biophysical Journal. 90: 1939-48. PMID 16387781 DOI: 10.1529/Biophysj.105.072975 |
0.375 |
|
| 2005 |
Zandi R, Reguera D. Mechanical properties of viral capsids. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 021917. PMID 16196614 DOI: 10.1103/Physreve.72.021917 |
0.321 |
|
| 2005 |
Zandi R, Reguera D, Bruinsma R, Gelbart W, Rudnick J. Assembly and disassembly of viral capsids Journal of Theoretical Medicine. 6: 69-72. DOI: 10.1080/10273660500149166 |
0.593 |
|
| 2004 |
Zandi R, Rudnick J, Kardar M. Casimir forces, surface fluctuations, and thinning of superfluid film. Physical Review Letters. 93: 155302. PMID 15524898 DOI: 10.1103/Physrevlett.93.155302 |
0.597 |
|
| 2004 |
Zandi R, Reguera D, Bruinsma RF, Gelbart WM, Rudnick J. Origin of icosahedral symmetry in viruses. Proceedings of the National Academy of Sciences of the United States of America. 101: 15556-60. PMID 15486087 DOI: 10.1073/Pnas.0405844101 |
0.602 |
|
| 2004 |
Zandi R, Golestanian R, Rudnick J. Electromechanical stiffening of rods and tubes Applied Physics Letters. 84: 5467-5469. DOI: 10.1063/1.1757018 |
0.607 |
|
| 2003 |
Zandi R, Rudnick J, Golestanian R. Anomalous bending of a polyelectrolyte. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 67: 061805. PMID 16241252 DOI: 10.1103/Physreve.67.061805 |
0.595 |
|
| 2003 |
Bruinsma RF, Gelbart WM, Reguera D, Rudnick J, Zandi R. Viral self-assembly as a thermodynamic process. Physical Review Letters. 90: 248101. PMID 12857229 DOI: 10.1103/Physrevlett.90.248101 |
0.594 |
|
| 2003 |
Zandi R, Reguera D, Rudnick J, Gelbart WM. What drives the translocation of stiff chains? Proceedings of the National Academy of Sciences of the United States of America. 100: 8649-53. PMID 12851462 DOI: 10.1073/Pnas.1533334100 |
0.572 |
|
| 2003 |
Zandi R, Rudnick J, Golestanian R. Probing polyelectrolyte elasticity using radial distribution function. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 67: 021803. PMID 12636704 DOI: 10.1103/Physreve.67.021803 |
0.567 |
|
| 2002 |
Zandi R, Rudnick J, Golestanian R. Radial distribution function of rod-like polyelectrolytes. The European Physical Journal. E, Soft Matter. 9: 41-6. PMID 15010928 DOI: 10.1140/Epje/I2002-10055-7 |
0.566 |
|
| 2001 |
Zandi R, Rudnick J. Constraints, histones, and the 30-nm spiral. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 64: 051918. PMID 11735979 DOI: 10.1103/Physreve.64.051918 |
0.53 |
|
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