Sean Eddy - Publications

Affiliations: 
Molecular & Cellular Biology Harvard University, Cambridge, MA, United States 
Area:
Computational and quantitative biology

101 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Mo A, Luo C, Davis FP, Mukamel EA, Henry GL, Nery JR, Urich MA, Picard S, Lister R, Eddy SR, Beer MA, Ecker JR, Nathans J. Epigenomic landscapes of retinal rods and cones. Elife. 5. PMID 26949250 DOI: 10.7554/Elife.11613  1
2015 Finn RD, Coggill P, Eberhardt RY, Eddy SR, Mistry J, Mitchell AL, Potter SC, Punta M, Qureshi M, Sangrador-Vegas A, Salazar GA, Tate J, Bateman A. The Pfam protein families database: towards a more sustainable future. Nucleic Acids Research. PMID 26673716 DOI: 10.1093/Nar/Gkv1344  1
2015 Rivas E, Eddy SR. Parameterizing sequence alignment with an explicit evolutionary model. Bmc Bioinformatics. 16: 406. PMID 26652060 DOI: 10.1186/S12859-015-0832-5  1
2015 Hubley R, Finn RD, Clements J, Eddy SR, Jones TA, Bao W, Smit AF, Wheeler TJ. The Dfam database of repetitive DNA families. Nucleic Acids Research. PMID 26612867 DOI: 10.1093/Nar/Gkv1272  1
2015 Mo A, Mukamel EA, Davis FP, Luo C, Henry GL, Picard S, Urich MA, Nery JR, Sejnowski TJ, Lister R, Eddy SR, Ecker JR, Nathans J. Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain. Neuron. 86: 1369-84. PMID 26087164 DOI: 10.1016/J.Neuron.2015.05.018  1
2015 Finn RD, Clements J, Arndt W, Miller BL, Wheeler TJ, Schreiber F, Bateman A, Eddy SR. HMMER web server: 2015 update. Nucleic Acids Research. 43: W30-8. PMID 25943547 DOI: 10.1093/Nar/Gkv397  1
2015 Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J, Finn RD. Rfam 12.0: updates to the RNA families database. Nucleic Acids Research. 43: D130-7. PMID 25392425 DOI: 10.1093/Nar/Gku1063  1
2014 Eddy SR. Computational analysis of conserved RNA secondary structure in transcriptomes and genomes. Annual Review of Biophysics. 43: 433-56. PMID 24895857 DOI: 10.1146/annurev-biophys-051013-022950  1
2014 Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer EL, Tate J, Punta M. Pfam: the protein families database. Nucleic Acids Research. 42: D222-30. PMID 24288371 DOI: 10.1093/Nar/Gkt1223  1
2013 Nawrocki EP, Eddy SR. Infernal 1.1: 100-fold faster RNA homology searches. Bioinformatics (Oxford, England). 29: 2933-5. PMID 24008419 DOI: 10.1093/bioinformatics/btt509  1
2013 Wheeler TJ, Eddy SR. nhmmer: DNA homology search with profile HMMs. Bioinformatics (Oxford, England). 29: 2487-9. PMID 23842809 DOI: 10.1093/Bioinformatics/Btt403  1
2013 Nawrocki EP, Eddy SR. Computational identification of functional RNA homologs in metagenomic data. Rna Biology. 10: 1170-9. PMID 23722291 DOI: 10.4161/rna.25038  1
2013 Davis FP, Eddy SR. Transcription factors that convert adult cell identity are differentially polycomb repressed. Plos One. 8: e63407. PMID 23650565 DOI: 10.1371/journal.pone.0063407  1
2013 Mistry J, Finn RD, Eddy SR, Bateman A, Punta M. Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions. Nucleic Acids Research. 41: e121. PMID 23598997 DOI: 10.1093/Nar/Gkt263  1
2013 Eddy SR. The ENCODE project: missteps overshadowing a success. Current Biology : Cb. 23: R259-61. PMID 23578867 DOI: 10.1016/j.cub.2013.03.023  1
2013 Swart EC, Bracht JR, Magrini V, Minx P, Chen X, Zhou Y, Khurana JS, Goldman AD, Nowacki M, Schotanus K, Jung S, Fulton RS, Ly A, McGrath S, Haub K, ... ... Eddy SR, et al. The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes. Plos Biology. 11: e1001473. PMID 23382650 DOI: 10.1371/Journal.Pbio.1001473  1
2013 Wheeler TJ, Clements J, Eddy SR, Hubley R, Jones TA, Jurka J, Smit AF, Finn RD. Dfam: a database of repetitive DNA based on profile hidden Markov models. Nucleic Acids Research. 41: D70-82. PMID 23203985 DOI: 10.1093/Nar/Gks1265  1
2013 Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki EP, Eddy SR, Gardner PP, Bateman A. Rfam 11.0: 10 years of RNA families. Nucleic Acids Research. 41: D226-32. PMID 23125362 DOI: 10.1093/Nar/Gks1005  1
2012 Eddy SR. The C-value paradox, junk DNA and ENCODE. Current Biology : Cb. 22: R898-9. PMID 23137679 DOI: 10.1016/j.cub.2012.10.002  1
2012 Henry GL, Davis FP, Picard S, Eddy SR. Cell type-specific genomics of Drosophila neurons. Nucleic Acids Research. 40: 9691-704. PMID 22855560 DOI: 10.1093/nar/gks671  1
2012 Rivas E, Lang R, Eddy SR. A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more. Rna (New York, N.Y.). 18: 193-212. PMID 22194308 DOI: 10.1261/Rna.030049.111  1
2012 Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, Heger A, Holm L, Sonnhammer EL, Eddy SR, Bateman A, et al. The Pfam protein families database. Nucleic Acids Research. 40: D290-301. PMID 22127870 DOI: 10.1093/Nar/Gkr1065  1
2011 Eddy SR. Accelerated Profile HMM Searches. Plos Computational Biology. 7: e1002195. PMID 22039361 DOI: 10.1371/journal.pcbi.1002195  1
2011 Kolbe DL, Eddy SR. Fast filtering for RNA homology search. Bioinformatics (Oxford, England). 27: 3102-9. PMID 21965818 DOI: 10.1093/bioinformatics/btr545  1
2011 Jung S, Swart EC, Minx PJ, Magrini V, Mardis ER, Landweber LF, Eddy SR. Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes. Nucleic Acids Research. 39: 7529-47. PMID 21715380 DOI: 10.1093/Nar/Gkr501  1
2011 Finn RD, Clements J, Eddy SR. HMMER web server: interactive sequence similarity searching. Nucleic Acids Research. 39: W29-37. PMID 21593126 DOI: 10.1093/nar/gkr367  1
2011 Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR, Bateman A. Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Research. 39: D141-5. PMID 21062808 DOI: 10.1093/Nar/Gkq1129  1
2010 Johnson LS, Eddy SR, Portugaly E. Hidden Markov model speed heuristic and iterative HMM search procedure. Bmc Bioinformatics. 11: 431. PMID 20718988 DOI: 10.1186/1471-2105-11-431  1
2010 Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A. The Pfam protein families database. Nucleic Acids Research. 38: D211-22. PMID 19920124 DOI: 10.1093/nar/gkp985  1
2009 Eddy SR. A new generation of homology search tools based on probabilistic inference. Genome Informatics. International Conference On Genome Informatics. 23: 205-11. PMID 20180275  1
2009 Davis FP, Eddy SR. A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas. Bioinformatics (Oxford, England). 25: 1647-54. PMID 19414530 DOI: 10.1093/bioinformatics/btp288  1
2009 Nawrocki EP, Kolbe DL, Eddy SR. Infernal 1.0: inference of RNA alignments. Bioinformatics (Oxford, England). 25: 1335-7. PMID 19307242 DOI: 10.1093/bioinformatics/btp157  1
2009 Kolbe DL, Eddy SR. Local RNA structure alignment with incomplete sequence. Bioinformatics (Oxford, England). 25: 1236-43. PMID 19304875 DOI: 10.1093/bioinformatics/btp154  1
2009 Jones TA, Otto W, Marz M, Eddy SR, Stadler PF. A survey of nematode SmY RNAs. Rna Biology. 6: 5-8. PMID 19106623 DOI: 10.4161/Rna.6.1.7634  1
2009 Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR, Bateman A. Rfam: updates to the RNA families database. Nucleic Acids Research. 37: D136-40. PMID 18953034 DOI: 10.1093/Nar/Gkn766  1
2008 Rivas E, Eddy SR. Probabilistic phylogenetic inference with insertions and deletions. Plos Computational Biology. 4: e1000172. PMID 18787703 DOI: 10.1371/Journal.Pcbi.1000172  1
2008 Eddy SR. A probabilistic model of local sequence alignment that simplifies statistical significance estimation. Plos Computational Biology. 4: e1000069. PMID 18516236 DOI: 10.1371/journal.pcbi.1000069  1
2008 Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A. The Pfam protein families database. Nucleic Acids Research. 36: D281-8. PMID 18039703 DOI: 10.1093/nar/gkm960  1
2007 Nawrocki EP, Eddy SR. Query-dependent banding (QDB) for faster RNA similarity searches. Plos Computational Biology. 3: e56. PMID 17397253 DOI: 10.1371/journal.pcbi.0030056  1
2006 Eddy SR. Computational analysis of RNAs. Cold Spring Harbor Symposia On Quantitative Biology. 71: 117-28. PMID 17381287 DOI: 10.1101/sqb.2006.71.003  1
2006 Dowell RD, Eddy SR. Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints. Bmc Bioinformatics. 7: 400. PMID 16952317 DOI: 10.1186/1471-2105-7-400  1
2006 Eddy SR. Genetics. Total information awareness for worm genetics. Science (New York, N.Y.). 311: 1381-2. PMID 16527956 DOI: 10.1126/science.1125655  1
2006 Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A. Pfam: clans, web tools and services. Nucleic Acids Research. 34: D247-51. PMID 16381856 DOI: 10.1093/Nar/Gkj149  1
2005 Stricklin SL, Griffiths-Jones S, Eddy SR. C. elegans noncoding RNA genes. Wormbook : the Online Review of C. Elegans Biology. 1-7. PMID 18023116 DOI: 10.1895/Wormbook.1.1.1  1
2005 Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes & Development. 19: 903-18. PMID 15805463 DOI: 10.1101/Gad.1276805  1
2005 Eddy SR. A model of the statistical power of comparative genome sequence analysis. Plos Biology. 3: e10. PMID 15660152 DOI: 10.1371/journal.pbio.0030010  1
2005 Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, Bateman A. Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Research. 33: D121-4. PMID 15608160 DOI: 10.1093/Nar/Gki081  1
2005 Eddy SR. "Antedisciplinary" Science Plos Computational Biology. 1: 0003-0004. DOI: 10.1371 /journal.pcbi.0010006  1
2004 Eddy SR. How do RNA folding algorithms work? Nature Biotechnology. 22: 1457-8. PMID 15529172 DOI: 10.1038/nbt1104-1457  1
2004 Eddy SR. What is a hidden Markov model? Nature Biotechnology. 22: 1315-6. PMID 15470472 DOI: 10.1038/nbt1004-1315  1
2004 Jiang N, Bao Z, Zhang X, Eddy SR, Wessler SR. Pack-MULE transposable elements mediate gene evolution in plants. Nature. 431: 569-73. PMID 15457261 DOI: 10.1038/Nature02953  1
2004 Starostina NG, Marshburn S, Johnson LS, Eddy SR, Terns RM, Terns MP. Circular box C/D RNAs in Pyrococcus furiosus. Proceedings of the National Academy of Sciences of the United States of America. 101: 14097-101. PMID 15375211 DOI: 10.1073/Pnas.0403520101  1
2004 Eddy SR. What is Bayesian statistics? Nature Biotechnology. 22: 1177-8. PMID 15340486 DOI: 10.1038/nbt0904-1177  1
2004 Eddy SR. Where did the BLOSUM62 alignment score matrix come from? Nature Biotechnology. 22: 1035-6. PMID 15286655 DOI: 10.1038/nbt0804-1035  1
2004 Eddy SR. What is dynamic programming? Nature Biotechnology. 22: 909-10. PMID 15229554 DOI: 10.1038/nbt0704-909  1
2004 Dowell RD, Eddy SR. Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction. Bmc Bioinformatics. 5: 71. PMID 15180907 DOI: 10.1186/1471-2105-5-71  1
2004 Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer EL, Studholme DJ, Yeats C, Eddy SR. The Pfam protein families database. Nucleic Acids Research. 32: D138-41. PMID 14681378 DOI: 10.1093/nar/gkh121  1
2003 Klein RJ, Eddy SR. RSEARCH: finding homologs of single structured RNA sequences. Bmc Bioinformatics. 4: 44. PMID 14499004 DOI: 10.1186/1471-2105-4-44  1
2003 McCutcheon JP, Eddy SR. Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics. Nucleic Acids Research. 31: 4119-28. PMID 12853629 DOI: 10.1093/nar/gkg438  1
2003 Cech TR, Eddy SR, Eisenberg D, Hersey K, Holtzman SH, Poste GH, Raikhel NV, Scheller RH, Singer DB, Waltham MC. Sharing publication-related data and materials: responsibilities of authorship in the life sciences. Plant Physiology. 132: 19-24. PMID 12746507 DOI: 10.1104/Pp.900068  1
2003 Salzberg S, Birney E, Eddy S, White O. Unrestricted free access works and must continue. Nature. 422: 801. PMID 12712164 DOI: 10.1038/422801A  1
2003 Ambros V, Bartel B, Bartel DP, Burge CB, Carrington JC, Chen X, Dreyfuss G, Eddy SR, Griffiths-Jones S, Marshall M, Matzke M, Ruvkun G, Tuschl T. A uniform system for microRNA annotation. Rna (New York, N.Y.). 9: 277-9. PMID 12592000 DOI: 10.1261/Rna.2183803  1
2003 Jiang N, Bao Z, Zhang X, Hirochika H, Eddy SR, McCouch SR, Wessler SR. An active DNA transposon family in rice. Nature. 421: 163-7. PMID 12520302 DOI: 10.1038/Nature01214  1
2003 Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. Rfam: an RNA family database. Nucleic Acids Research. 31: 439-41. PMID 12520045 DOI: 10.1093/Nar/Gkg006  1
2003 Bao Z, Eddy SR. Automated de novo identification of repeat sequence families in sequenced genomes Genome Research. 13: 1269-1276.  1
2002 Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, ... ... Eddy SR, et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420: 520-62. PMID 12466850 DOI: 10.1038/Nature01262  1
2002 Bao Z, Eddy SR. Automated de novo identification of repeat sequence families in sequenced genomes. Genome Research. 12: 1269-76. PMID 12176934 DOI: 10.1101/Gr.88502  1
2002 Eddy SR. A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure. Bmc Bioinformatics. 3: 18. PMID 12095421 DOI: 10.1186/1471-2105-3-18  1
2002 Klein RJ, Misulovin Z, Eddy SR. Noncoding RNA genes identified in AT-rich hyperthermophiles. Proceedings of the National Academy of Sciences of the United States of America. 99: 7542-7. PMID 12032319 DOI: 10.1073/pnas.112063799  1
2002 Zmasek CM, Eddy SR. RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs. Bmc Bioinformatics. 3: 14. PMID 12028595 DOI: 10.1186/1471-2105-3-14  1
2002 Eddy SR. Computational genomics of noncoding RNA genes. Cell. 109: 137-40. PMID 12007398 DOI: 10.1016/S0092-8674(02)00727-4  1
2002 Speckmann WA, Li ZH, Lowe TM, Eddy SR, Terns RM, Terns MP. Archaeal guide RNAs function in rRNA modification in the eukaryotic nucleus. Current Biology : Cb. 12: 199-203. PMID 11839271 DOI: 10.1016/S0960-9822(02)00655-3  1
2001 Rivas E, Eddy SR. Noncoding RNA gene detection using comparative sequence analysis Bmc Bioinformatics. 2. PMID 11801179 DOI: 10.1186/1471-2105-2-8  1
2001 Eddy SR. Non-coding RNA genes and the modern RNA world Nature Reviews Genetics. 2: 919-929. PMID 11733745 DOI: 10.1038/35103511  1
2001 Dowell RD, Jokerst RM, Day A, Eddy SR, Stein L. The distributed annotation system Bmc Bioinformatics [Electronic Resource]. 2: 7. PMID 11667947 DOI: 10.1186/1471-2105-2-7  1
2001 Zmasek CM, Eddy SR. A simple algorithm to infer gene duplication and speciation events on a gene tree Bioinformatics. 17: 821-828. PMID 11590098  1
2001 Rivas E, Klein RJ, Jones TA, Eddy SR. Computational identification of noncoding RNAs in E. coli by comparative genomics Current Biology. 11: 1369-1373. PMID 11553332 DOI: 10.1016/S0960-9822(01)00401-8  1
2001 Jones SJ, Riddle DL, Pouzyrev AT, Velculescu VE, Hillier L, Eddy SR, Stricklin SL, Baillie DL, Waterston R, Marra MA. Changes in gene expression associated with developmental arrest and longevity in Caenorhabditis elegans. Genome Research. 11: 1346-52. PMID 11483575 DOI: 10.1101/Gr.184401  1
2001 Zmasek CM, Eddy SR. ATV: Display and manipulation of annotated phylogenetic trees Bioinformatics. 17: 383-384. PMID 11301314 DOI: 10.1093/bioinformatics/17.4.383  1
2000 Rivas E, Eddy SR. Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs Bioinformatics. 16: 583-605. PMID 11038329 DOI: 10.1093/Bioinformatics/16.7.583  1
2000 Rivas E, Eddy SR. The language of RNA: A formal grammar that includes pseudoknots Bioinformatics. 16: 334-340. PMID 10869031 DOI: 10.1093/Bioinformatics/16.4.334  1
2000 Omer AD, Lowe TM, Russell AG, Ebhardt H, Eddy SR, Dennis PP. Homologs of small nucleolar RNAs in Archaea. Science (New York, N.Y.). 288: 517-22. PMID 10775111 DOI: 10.1126/Science.288.5465.517  1
1999 Lowe TM, Eddy SR. A computational screen for methylation guide snoRNAs in yeast Science. 283: 1168-1171. PMID 10024243 DOI: 10.1126/science.283.5405.1168  1
1999 Rivas E, Eddy SR. A dynamic programming algorithm for RNA structure prediction including pseudoknots Journal of Molecular Biology. 285: 2053-2068. PMID 9925784 DOI: 10.1006/Jmbi.1998.2436  1
1999 Bateman A, Birney E, Durbin R, Eddy SR, Finn RD, Sonnhammer ELL. Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins Nucleic Acids Research. 27: 260-262. PMID 9847196 DOI: 10.1093/Nar/27.1.260  1
1998 Eddy SR. Profile hidden Markov models Bioinformatics. 14: 755-763. PMID 9918945  1
1998 Sonnhammer ELL, Eddy SR, Birney E, Bateman A, Durbin R. Pfam: Multiple sequence alignments and HMM-profiles of protein domains Nucleic Acids Research. 26: 320-322. PMID 9399864 DOI: 10.1093/Nar/26.1.320  1
1998 Eddy SR. Multiple-alignment & -sequence searches Trends in Biotechnology. 16: XXI-XXII.  1
1997 Bateman A, Eddy SR, Mesyanzhinov VV. A member of the immunoglobulin superfamily in bacteriophage T4 Virus Genes. 14: 163-165. PMID 9237357 DOI: 10.1023/A:1007977503658  1
1997 Sonnhammer ELL, Eddy SR, Durbin R. Pfam: A comprehensive database of protein domain families based on seed alignments Proteins: Structure, Function and Genetics. 28: 405-420. PMID 9223186 DOI: 10.1002/(Sici)1097-0134(199707)28:3<405::Aid-Prot10>3.0.Co;2-L  1
1996 Bateman A, Eddy SR, Chothia C. Members of the immunoglobulin superfamily in bacteria Protein Science. 5: 1939-1941. PMID 8880921 DOI: 10.1002/Pro.5560050923  1
1996 Lowe TM, Eddy SR. TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence Nucleic Acids Research. 25: 955-964. DOI: 10.1093/nar/25.5.0955  1
1996 Eddy SR. Molecular genetics in silico Trends in Genetics. 12: 372.  1
1996 Eddy SR, MacKay DJC, Gosden SP, Craven BJ, Craven LS, Nelson JC. Is the Pope the Pope? Nature. 382: 490.  1
1995 Eddy SR. Multiple alignment using hidden Markov models Proceedings / . International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 3: 114-120. PMID 7584426  1
1995 Chalfie M, Eddy S, Hengartner MO, Hodgkin J, Kohara Y, Plasterk RH, Waterston RH, White JG. Genome maps. VI. Caenorhabditis elegans. Wall chart. Science (New York, N.Y.). 270: 415-30. PMID 7569996  1
1995 Eddy SR, Mitchison G, Durbin R. Maximum discrimination hidden Markov models of sequence consensus Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 2: 9-23. PMID 7497123 DOI: 10.1089/Cmb.1995.2.9  1
1994 Eddy SR, Durbin R. RNA sequence analysis using covariance models Nucleic Acids Research. 22: 2079-2088. PMID 8029015 DOI: 10.1093/Nar/22.11.2079  1
1992 Eddy SR, Gold L. Artificial mobile DNA element constructed from the EcoRI endonuclease gene. Proceedings of the National Academy of Sciences of the United States of America. 89: 1544-7. PMID 1311841 DOI: 10.1073/Pnas.89.5.1544  1
1991 Eddy SR, Gold L. The phage T4 nrdB intron: a deletion mutant of a version found in the wild. Genes & Development. 5: 1032-41. PMID 2044951 DOI: 10.1101/Gad.5.6.1032  1
1990 Tuerk C, Eddy S, Parma D, Gold L. Autogenous translational operator recognized by bacteriophage T4 DNA polymerase. Journal of Molecular Biology. 213: 749-61. PMID 2359122 DOI: 10.1016/S0022-2836(05)80261-X  1
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