| Year |
Citation |
Score |
| 2021 |
Kapun M, Nunez JCB, Bogaerts-Márquez M, Murga-Moreno J, Paris M, Outten J, Coronado-Zamora M, Tern C, Rota-Stabelli O, García Guerreiro MP, Casillas S, Orengo DJ, Puerma E, Kankare M, Ometto L, ... ... Vieira J, et al. Drosophila Evolution over Space and Time (DEST) - A New Population Genomics Resource. Molecular Biology and Evolution. PMID 34469576 DOI: 10.1093/molbev/msab259 |
0.666 |
|
| 2021 |
Wallace MA, Coffman KA, Gilbert C, Ravindran S, Albery GF, Abbott J, Argyridou E, Bellosta P, Betancourt AJ, Colinet H, Eric K, Glaser-Schmitt A, Grath S, Jelic M, Kankare M, ... ... Vieira J, et al. The discovery, distribution, and diversity of DNA viruses associated with in Europe. Virus Evolution. 7: veab031. PMID 34408913 DOI: 10.1093/ve/veab031 |
0.631 |
|
| 2021 |
López-Fernández H, Vieira CP, Ferreira P, Gouveia P, Fdez-Riverola F, Reboiro-Jato M, Vieira J. On the Identification of Clinically Relevant Bacterial Amino Acid Changes at the Whole Genome Level Using Auto-PSS-Genome. Interdisciplinary Sciences, Computational Life Sciences. 13: 334-343. PMID 34009546 DOI: 10.1007/s12539-021-00439-2 |
0.306 |
|
| 2020 |
Brito Â, Vieira J, Vieira CP, Zhu T, Leão PN, Ramos V, Lu X, Vasconcelos VM, Gugger M, Tamagnini P. Comparative Genomics Discloses the Uniqueness and the Biosynthetic Potential of the Marine Cyanobacterium . Frontiers in Microbiology. 11: 1527. PMID 32774329 DOI: 10.3389/Fmicb.2020.01527 |
0.372 |
|
| 2020 |
Reis M, Wiegleb G, Claude J, Lata R, Horchler B, Ha NT, Reimer C, Vieira CP, Vieira J, Posnien N. Multiple loci linked to inversions are associated with eye size variation in species of the Drosophila virilis phylad. Scientific Reports. 10: 12832. PMID 32732947 DOI: 10.1038/S41598-020-69719-Z |
0.387 |
|
| 2020 |
Kapun M, Barrón MG, Staubach F, Obbard DJ, Wiberg RAW, Vieira J, Goubert C, Rota-Stabelli O, Kankare M, Bogaerts-Márquez M, Haudry A, Waidele L, Kozeretska I, Pasyukova EG, Loeschcke V, et al. Genomic analysis of European Drosophila melanogaster populations reveals longitudinal structure, continent-wide selection, and previously unknown DNA viruses. Molecular Biology and Evolution. PMID 32413142 DOI: 10.1093/Molbev/Msaa120 |
0.699 |
|
| 2019 |
Musasa ST, Mashingaidze AB, Musundire R, Aguiar AARM, Vieira J, Vieira CP. Fruit fly identification, population dynamics and fruit damage during fruiting seasons of sweet oranges in Rusitu Valley, Zimbabwe. Scientific Reports. 9: 13578. PMID 31537891 DOI: 10.1038/S41598-019-50001-W |
0.342 |
|
| 2019 |
Vieira J, Rocha S, Vázquez N, López-Fernández H, Fdez-Riverola F, Reboiro-Jato M, Vieira CP. Predicting Specificities Under the Non-self Gametophytic Self-Incompatibility Recognition Model. Frontiers in Plant Science. 10: 879. PMID 31379893 DOI: 10.3389/Fpls.2019.00879 |
0.415 |
|
| 2019 |
Vázquez N, López-Fernández H, Vieira CP, Fdez-Riverola F, Vieira J, Reboiro-Jato M. BDBM 1.0: A Desktop Application for Efficient Retrieval and Processing of High-Quality Sequence Data and Application to the Identification of the Putative Coffea S-Locus. Interdisciplinary Sciences, Computational Life Sciences. PMID 30712176 DOI: 10.1007/S12539-019-00320-3 |
0.382 |
|
| 2018 |
López-Fernández H, Duque P, Henriques S, Vázquez N, Fdez-Riverola F, Vieira CP, Reboiro-Jato M, Vieira J. Bioinformatics Protocols for Quickly Obtaining Large-Scale Data Sets for Phylogenetic Inferences. Interdisciplinary Sciences, Computational Life Sciences. PMID 30511150 DOI: 10.1007/S12539-018-0312-5 |
0.407 |
|
| 2018 |
Reis M, Vieira CP, Lata R, Posnien N, Vieira J. Origin and consequences of chromosomal inversions in the virilis group of Drosophila. Genome Biology and Evolution. PMID 30376068 DOI: 10.1093/Gbe/Evy239 |
0.446 |
|
| 2018 |
Pratas MI, Aguiar B, Vieira J, Nunes V, Teixeira V, Fonseca NA, Iezzoni A, van Nocker S, Vieira CP. Inferences on specificity recognition at the Malus×domestica gametophytic self-incompatibility system. Scientific Reports. 8: 1717. PMID 29379047 DOI: 10.1038/S41598-018-19820-1 |
0.37 |
|
| 2017 |
Brito Â, Ramos V, Mota R, Lima S, Santos A, Vieira J, Vieira CP, Kaštovský J, Vasconcelos VM, Tamagnini P. Description of new genera and species of marine cyanobacteria from the Portuguese Atlantic coast. Molecular Phylogenetics and Evolution. PMID 28279808 DOI: 10.1016/J.Ympev.2017.03.006 |
0.351 |
|
| 2016 |
Reis M, Silva AC, Vieira CP, Vieira J. The Drosophila melanogaster Muc68E Mucin Gene Influences Adult Size, Starvation Tolerance, and Cold Recovery. G3 (Bethesda, Md.). PMID 27172221 DOI: 10.1534/G3.116.029934 |
0.378 |
|
| 2015 |
Pereira SB, Mota R, Vieira CP, Vieira J, Tamagnini P. Phylum-wide analysis of genes/proteins related to the last steps of assembly and export of extracellular polymeric substances (EPS) in cyanobacteria. Scientific Reports. 5: 14835. PMID 26437902 DOI: 10.1038/Srep14835 |
0.353 |
|
| 2015 |
Reis M, Valer FB, Vieira CP, Vieira J. Drosophila americana Diapausing Females Show Features Typical of Young Flies. Plos One. 10: e0138758. PMID 26398836 DOI: 10.1371/Journal.Pone.0138758 |
0.304 |
|
| 2015 |
Aguiar B, Vieira J, Cunha AE, Vieira CP. No evidence for Fabaceae Gametophytic self-incompatibility being determined by Rosaceae, Solanaceae, and Plantaginaceae S-RNase lineage genes. Bmc Plant Biology. 15: 129. PMID 26032621 DOI: 10.1186/S12870-015-0497-2 |
0.387 |
|
| 2015 |
Aguiar B, Vieira J, Cunha AE, Fonseca NA, Iezzoni A, van Nocker S, Vieira CP. Convergent evolution at the gametophytic self-incompatibility system in Malus and Prunus. Plos One. 10: e0126138. PMID 25993016 DOI: 10.1371/Journal.Pone.0126138 |
0.382 |
|
| 2014 |
Sillero N, Reis M, Vieira CP, Vieira J, Morales-Hojas R. Niche evolution and thermal adaptation in the temperate species Drosophila americana. Journal of Evolutionary Biology. 27: 1549-61. PMID 24835376 DOI: 10.1111/Jeb.12400 |
0.354 |
|
| 2014 |
Reis M, Páscoa I, Rocha H, Aguiar B, Vieira CP, Vieira J. Genes belonging to the insulin and ecdysone signaling pathways can contribute to developmental time, lifespan and abdominal size variation in Drosophila americana. Plos One. 9: e86690. PMID 24489769 DOI: 10.1371/Journal.Pone.0086690 |
0.402 |
|
| 2013 |
Araújo AR, Reis M, Rocha H, Aguiar B, Morales-Hojas R, Macedo-Ribeiro S, Fonseca NA, Reboiro-Jato D, Reboiro-Jato M, Fdez-Riverola F, Vieira CP, Vieira J. The Drosophila melanogaster methuselah gene: a novel gene with ancient functions. Plos One. 8: e63747. PMID 23696853 DOI: 10.1371/Journal.Pone.0063747 |
0.414 |
|
| 2013 |
Aguiar B, Vieira J, Cunha AE, Fonseca NA, Reboiro-Jato D, Reboiro-Jato M, Fdez-Riverola F, Raspé O, Vieira CP. Patterns of evolution at the gametophytic self-incompatibility Sorbus aucuparia (Pyrinae) S pollen genes support the non-self recognition by multiple factors model. Journal of Experimental Botany. 64: 2423-34. PMID 23606363 DOI: 10.1093/Jxb/Ert098 |
0.359 |
|
| 2013 |
Fonseca NA, Morales-Hojas R, Reis M, Rocha H, Vieira CP, Nolte V, Schlötterer C, Vieira J. Drosophila americana as a model species for comparative studies on the molecular basis of phenotypic variation. Genome Biology and Evolution. 5: 661-79. PMID 23493635 DOI: 10.1093/Gbe/Evt037 |
0.437 |
|
| 2012 |
Morales-Hojas R, Vieira J. Phylogenetic patterns of geographical and ecological diversification in the subgenus Drosophila. Plos One. 7: e49552. PMID 23152919 DOI: 10.1371/Journal.Pone.0049552 |
0.326 |
|
| 2012 |
Reboiro-Jato D, Reboiro-Jato M, Fdez-Riverola F, Vieira CP, Fonseca NA, Vieira J. ADOPS--Automatic Detection Of Positively Selected Sites. Journal of Integrative Bioinformatics. 9: 200. PMID 22829571 DOI: 10.2390/Biecoll-Jib-2012-200 |
0.319 |
|
| 2012 |
Fonseca NA, Vieira CP, Schlötterer C, Vieira J. The DAIBAM MITE element is involved in the origin of one fixed and two polymorphic Drosophila virilis phylad inversions. Fly. 6: 71-4. PMID 22561870 DOI: 10.4161/Fly.19423 |
0.369 |
|
| 2011 |
Reis M, Vieira CP, Morales-Hojas R, Aguiar B, Rocha H, Schlötterer C, Vieira J. A comparative study of the short term cold resistance response in distantly related Drosophila species: the role of regucalcin and frost. Plos One. 6: e25520. PMID 21991316 DOI: 10.1371/Journal.Pone.0025520 |
0.394 |
|
| 2011 |
Schäfer MA, Routtu J, Vieira J, Hoikkala A, Ritchie MG, Schlötterer C. Multiple quantitative trait loci influence intra-specific variation in genital morphology between phylogenetically distinct lines of Drosophila montana. Journal of Evolutionary Biology. 24: 1879-86. PMID 21635604 DOI: 10.1111/J.1420-9101.2011.02316.X |
0.357 |
|
| 2011 |
Morales-Hojas R, Reis M, Vieira CP, Vieira J. Resolving the phylogenetic relationships and evolutionary history of the Drosophila virilis group using multilocus data. Molecular Phylogenetics and Evolution. 60: 249-58. PMID 21571080 DOI: 10.1016/J.Ympev.2011.04.022 |
0.38 |
|
| 2011 |
Reis M, Sousa-Guimarães S, Vieira CP, Sunkel CE, Vieira J. Drosophila genes that affect meiosis duration are among the meiosis related genes that are more often found duplicated. Plos One. 6: e17512. PMID 21423746 DOI: 10.1371/Journal.Pone.0017512 |
0.396 |
|
| 2010 |
Vieira J, Ferreira PG, Aguiar B, Fonseca NA, Vieira CP. Evolutionary patterns at the RNase based gametophytic self - incompatibility system in two divergent Rosaceae groups (Maloideae and Prunus). Bmc Evolutionary Biology. 10: 200. PMID 20584298 DOI: 10.1186/1471-2148-10-200 |
0.361 |
|
| 2010 |
Santos JS, Fonseca NA, Vieira CP, Vieira J, Casares F. Phylogeny of the teashirt-related zinc finger (tshz) gene family and analysis of the developmental expression of tshz2 and tshz3b in the zebrafish. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 239: 1010-8. PMID 20108322 DOI: 10.1002/Dvdy.22228 |
0.336 |
|
| 2010 |
Schäfer MA, Mazzi D, Klappert K, Kauranen H, Vieira J, Hoikkala A, Ritchie MG, Schlötterer C. A microsatellite linkage map for Drosophila montana shows large variation in recombination rates, and a courtship song trait maps to an area of low recombination. Journal of Evolutionary Biology. 23: 518-27. PMID 20040000 DOI: 10.1111/J.1420-9101.2009.01916.X |
0.355 |
|
| 2009 |
Vieira J, Fonseca NA, Vieira CP. RNase-based gametophytic self-incompatibility evolution: Questioning the hypothesis of multiple independent recruitments of the S-pollen gene. Journal of Molecular Evolution. 69: 32-41. PMID 19495553 DOI: 10.1007/S00239-009-9249-Y |
0.363 |
|
| 2009 |
Fonseca NA, Vieira CP, Vieira J. Gene classification based on amino acid motifs and residues: the DLX (distal-less) test case. Plos One. 4: e5748. PMID 19484130 DOI: 10.1371/Journal.Pone.0005748 |
0.403 |
|
| 2009 |
Morales-Hojas R, Vieira CP, Reis M, Vieira J. Comparative analysis of five immunity-related genes reveals different levels of adaptive evolution in the virilis and melanogaster groups of Drosophila. Heredity. 102: 573-8. PMID 19223926 DOI: 10.1038/Hdy.2009.11 |
0.4 |
|
| 2008 |
Cruz E, Whittington C, Krikler SH, Mascarenhas C, Lacerda R, Vieira J, Porto G. A new 500 kb haplotype associated with high CD8+ T-lymphocyte numbers predicts a less severe expression of hereditary hemochromatosis. Bmc Medical Genetics. 9: 97. PMID 18990219 DOI: 10.1186/1471-2350-9-97 |
0.307 |
|
| 2008 |
Reis M, Vieira CP, Morales-Hojas R, Vieira J. An old bilbo-like non-LTR retroelement insertion provides insight into the relationship of species of the virilis group. Gene. 425: 48-55. PMID 18775768 DOI: 10.1016/J.Gene.2008.08.010 |
0.387 |
|
| 2008 |
Vieira J, Teles E, Santos RA, Vieira CP. Recombination at Prunus S-locus region SLFL1 gene. Genetics. 180: 483-91. PMID 18757935 DOI: 10.1534/Genetics.108.087825 |
0.373 |
|
| 2008 |
Vieira J, Santos RA, Habu T, Tao R, Vieira CP. The Prunus self-incompatibility locus (S locus) is seldom rearranged. The Journal of Heredity. 99: 657-60. PMID 18703538 DOI: 10.1093/Jhered/Esn063 |
0.357 |
|
| 2008 |
Vieira J, Fonseca NA, Vieira CP. An S-RNase-based gametophytic self-incompatibility system evolved only once in eudicots. Journal of Molecular Evolution. 67: 179-90. PMID 18626680 DOI: 10.1007/S00239-008-9137-X |
0.351 |
|
| 2008 |
Fonseca NA, Vieira CP, Holland PW, Vieira J. Protein evolution of ANTP and PRD homeobox genes. Bmc Evolutionary Biology. 8: 200. PMID 18620554 DOI: 10.1186/1471-2148-8-200 |
0.397 |
|
| 2008 |
Tsukamoto T, Potter D, Tao R, Vieira CP, Vieira J, Iezzoni AF. Genetic and molecular characterization of three novel S-haplotypes in sour cherry (Prunus cerasus L.). Journal of Experimental Botany. 59: 3169-85. PMID 18617504 DOI: 10.1093/Jxb/Ern172 |
0.332 |
|
| 2008 |
Vieira J, Santos RAM, Ferreira SM, Vieira CP. Inferences on the number and frequency of S-pollen gene (SFB) specificities in the polyploid Prunus spinosa Heredity. 101: 351-358. PMID 18594559 DOI: 10.1038/Hdy.2008.60 |
0.356 |
|
| 2008 |
Morales-Hojas R, Vieira CP, Vieira J. Inferring the evolutionary history of Drosophila americana and Drosophila novamexicana using a multilocus approach and the influence of chromosomal rearrangements in single gene analyses. Molecular Ecology. 17: 2910-26. PMID 18482259 DOI: 10.1111/J.1365-294X.2008.03796.X |
0.472 |
|
| 2008 |
Vieira J, Fonseca NA, Santos RA, Habu T, Tao R, Vieira CP. The number, age, sharing and relatedness of S-locus specificities in Prunus. Genetics Research. 90: 17-26. PMID 18289397 DOI: 10.1017/S0016672307009044 |
0.387 |
|
| 2007 |
Vieira J, Cardoso CS, Pinto J, Patil K, Brazdil P, Cruz E, Mascarenhas C, Lacerda R, Gartner A, Almeida S, Alves H, Porto G. A putative gene located at the MHC class I region around the D6S105 marker contributes to the setting of CD8+ T-lymphocyte numbers in humans. International Journal of Immunogenetics. 34: 359-67. PMID 17845307 DOI: 10.1111/J.1744-313X.2007.00700.X |
0.309 |
|
| 2007 |
Vieira J, Morales-Hojas R, Santos RA, Vieira CP. Different positively selected sites at the gametophytic self-incompatibility pistil S-RNase gene in the Solanaceae and Rosaceae (Prunus, Pyrus, and Malus). Journal of Molecular Evolution. 65: 175-85. PMID 17713808 DOI: 10.1007/S00239-006-0285-6 |
0.311 |
|
| 2007 |
Morales-Hojas R, Päällysaho S, Vieira CP, Hoikkala A, Vieira J. Comparative polytene chromosome maps of D. montana and D. virilis. Chromosoma. 116: 21-7. PMID 16906413 DOI: 10.1007/S00412-006-0075-3 |
0.384 |
|
| 2006 |
Nunes MD, Santos RA, Ferreira SM, Vieira J, Vieira CP. Variability patterns and positively selected sites at the gametophytic self-incompatibility pollen SFB gene in a wild self-incompatible Prunus spinosa (Rosaceae) population. The New Phytologist. 172: 577-87. PMID 17083687 DOI: 10.1111/J.1469-8137.2006.01838.X |
0.372 |
|
| 2006 |
Morales-Hojas R, Vieira CP, Vieira J. The evolutionary history of the transposable element Penelope in the Drosophila virilis group of species. Journal of Molecular Evolution. 63: 262-73. PMID 16830099 DOI: 10.1007/S00239-005-0213-1 |
0.35 |
|
| 2006 |
Vieira CP, Almeida A, Dias JD, Vieira J. On the location of the gene(s) harbouring the advantageous variant that maintains the X/4 fusion of Drosophila americana. Genetical Research. 87: 163-74. PMID 16817999 DOI: 10.1017/S0016672306008147 |
0.376 |
|
| 2005 |
Päällysaho S, Vieira CP, Hoikkala A, Vieira J. Evidence for introgression in differentiated North-American and Finnish Drosophila montana populations. Genetica. 123: 285-93. PMID 15954499 DOI: 10.1007/S10709-004-5090-9 |
0.372 |
|
| 2004 |
Costas J, Pereira PS, Vieira CP, Pinho S, Vieira J, Casares F. Dynamics and function of intron sequences of the wingless gene during the evolution of the Drosophila genus. Evolution & Development. 6: 325-35. PMID 15330865 DOI: 10.1111/J.1525-142X.2004.04040.X |
0.426 |
|
| 2003 |
Costas J, Vieira CP, Casares F, Vieira J. Genomic characterization of a repetitive motif strongly associated with developmental genes in Drosophila. Bmc Genomics. 4: 52. PMID 14675495 DOI: 10.1186/1471-2164-4-52 |
0.389 |
|
| 2003 |
Vieira CP, Charlesworth D, Vieira J. Evidence for rare recombination at the gametophytic self-incompatibility locus. Heredity. 91: 262-7. PMID 12939627 DOI: 10.1038/Sj.Hdy.6800326 |
0.407 |
|
| 2002 |
Huttunen S, Vieira J, Hoikkala A. Nucleotide and repeat length variation at the nonA gene of the Drosophila virilis group species and its effects on male courtship song. Genetica. 115: 159-67. PMID 12403170 DOI: 10.1023/A:1020102602268 |
0.43 |
|
| 2002 |
Vieira J. Two divergent species of the virilis group, Drosophila littoralis and Drosophila virilis, share a replacement polymorphism at the fused locus. Molecular Biology and Evolution. 19: 579-81. PMID 11919301 DOI: 10.1093/Oxfordjournals.Molbev.A004115 |
0.346 |
|
| 2001 |
Vieira J, Hoikkala A. Variability levels, population size and structure of American and European Drosophila montana populations Heredity. 86: 506-511. PMID 11520351 DOI: 10.1046/J.1365-2540.2001.00863.X |
0.365 |
|
| 2001 |
Vieira J, McAllister BF, Charlesworth B. Evidence for selection at the fused1 locus of Drosophila americana. Genetics. 158: 279-90. PMID 11333236 |
0.654 |
|
| 2000 |
Vieira J, Charlesworth B. Evidence for selection at the fused locus of Drosophila virilis. Genetics. 155: 1701-9. PMID 10924468 |
0.525 |
|
| 1999 |
Vieira CP, Vieira J, Charlesworth D. Evolution of the cycloidea gene family in Antirrhinum and Misopates Molecular Biology and Evolution. 16: 1474-1483. PMID 10555278 DOI: 10.1093/Oxfordjournals.Molbev.A026059 |
0.39 |
|
| 1999 |
Vieira J, Charlesworth B. X chromosome DNA variation in Drosophila virilis. Proceedings. Biological Sciences / the Royal Society. 266: 1905-12. PMID 10535105 DOI: 10.1098/Rspb.1999.0865 |
0.582 |
|
| 1999 |
McVean GAT, Vieira J. The evolution of codon preferences in Drosophila: A maximum-likelihood approach to parameter estimation and hypothesis testing Journal of Molecular Evolution. 49: 63-75. PMID 10368435 DOI: 10.1007/Pl00006535 |
0.38 |
|
| 1998 |
Vieira J, Vieira CP, Hartl DL, Lozovskaya ER. Factors contributing to the hybrid dysgenesis syndrome in Drosophila virilis. Genetical Research. 71: 109-17. PMID 9717433 DOI: 10.1017/S001667239800322X |
0.488 |
|
| 1997 |
Vieira CP, Vieira J, Hartl DL. The evolution of small gene clusters: evidence for an independent origin of the maltase gene cluster in Drosophila virilis and Drosophila melanogaster. Molecular Biology and Evolution. 14: 985-93. PMID 9335139 DOI: 10.1093/Oxfordjournals.Molbev.A025715 |
0.533 |
|
| 1997 |
Vieira J, Vieira CP, Hartl DL, Lozovskaya ER. Discordant rates of chromosome evolution in the Drosophila virilis species group. Genetics. 147: 223-30. PMID 9286682 |
0.492 |
|
| 1997 |
Vieira J, Vieira CP, Hartl DL, Lozovskaya ER. A framework physical map of Drosophila virilis based on P1 clones: applications in genome evolution. Chromosoma. 106: 99-107. PMID 9215559 DOI: 10.1007/S004120050229 |
0.582 |
|
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