Thomas D. Petes - Related publications

Affiliations: 
1977-1988 microbiology University of Chicago, Chicago, IL 
 1988-2004 Genetics & Molecular Biology University of North Carolina, Chapel Hill, Chapel Hill, NC 
 2004- Molecular Genetics and Microbiology Duke University, Durham, NC 
Area:
Genetics
Website:
https://mgm.duke.edu/faculty-and-research/primary-faculty/thomas-d-petes-phd/
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Kot P, Yasuhara T, Shibata A, Hirakawa M, Abe Y, Yamauchi M, Matsuda N. Mechanism of chromosome rearrangement arising from single-strand breaks. Biochemical and Biophysical Research Communications. 572: 191-196. PMID 34375929 DOI: 10.1016/j.bbrc.2021.08.001   
2021 Yoshida K, Fujita M. DNA damage responses that enhance resilience to replication stress. Cellular and Molecular Life Sciences : Cmls. PMID 34463774 DOI: 10.1007/s00018-021-03926-3   
2021 Lu R, Zhang H, Jiang YN, Wang ZQ, Sun L, Zhou ZW. Post-Translational Modification of MRE11: Its Implication in DDR and Diseases. Genes. 12. PMID 34440334 DOI: 10.3390/genes12081158   
2021 Han P, Ma Y, Fu Z, Guo Z, Xie J, Wu Y, Yuan YJ. A DNA Inversion System in Eukaryotes Established via Laboratory Evolution. Acs Synthetic Biology. PMID 34420293 DOI: 10.1021/acssynbio.1c00132   
2021 Polleys EJ, Freudenreich CH. Homologous recombination within repetitive DNA. Current Opinion in Genetics & Development. 71: 143-153. PMID 34464817 DOI: 10.1016/j.gde.2021.08.005   
2021 Yasmin T, Azeroglu B, Cockram CA, Leach DRF. Distribution of Holliday junctions and repair forks during Escherichia coli DNA double-strand break repair. Plos Genetics. 17: e1009717. PMID 34432790 DOI: 10.1371/journal.pgen.1009717   
2021 Lal PB, Wells F, Myers KS, Banerjee R, Guss AM, Kiley PJ. Improving mobilization of foreign DNA into ZM4 by removal of multiple restriction systems. Applied and Environmental Microbiology. AEM0080821. PMID 34288704 DOI: 10.1128/AEM.00808-21   
2021 Carlier F, Nguyen TS, Mazur AK, Gladyshev E. Modulation of C-to-T mutation by recombination-independent pairing of closely-positioned DNA repeats. Biophysical Journal. PMID 34509507 DOI: 10.1016/j.bpj.2021.09.014   
2021 Branzei D, Szakal B. DNA helicases in homologous recombination repair. Current Opinion in Genetics & Development. 71: 27-33. PMID 34271541 DOI: 10.1016/j.gde.2021.06.009   
2021 Hu W, Wang Y, Yang B, Lin C, Yu H, Liu G, Deng Z, Ou HY, He X. Bacterial YedK represses plasmid DNA replication and transformation through its DNA single-strand binding activity. Microbiological Research. 252: 126852. PMID 34454309 DOI: 10.1016/j.micres.2021.126852   
2021 Anton BP, Roberts RJ. Beyond Restriction Modification: Epigenomic Roles of DNA Methylation in Prokaryotes. Annual Review of Microbiology. PMID 34314594 DOI: 10.1146/annurev-micro-040521-035040   
2021 Simoneau A, Zou L. An extending ATR-CHK1 circuitry: the replication stress response and beyond. Current Opinion in Genetics & Development. 71: 92-98. PMID 34329853 DOI: 10.1016/j.gde.2021.07.003   
2021 Wiegmans AP, Ward A, Ivanova E, Duijf PHG, Adams MN, Najib IM, Van Oosterhout R, Sadowski MC, Kelly G, Morrical SW, O'Byrne K, Lee JS, Richard DJ. Genome instability and pressure on non-homologous end joining drives chemotherapy resistance via a DNA repair crisis switch in triple negative breast cancer. Nar Cancer. 3: zcab022. PMID 34316709 DOI: 10.1093/narcan/zcab022   
2021 Zhao F, Kim W, Gao H, Liu C, Zhang Y, Chen Y, Deng M, Zhou Q, Huang J, Hu Q, Chen SH, Nowsheen S, Kloeber JA, Qin B, Yin P, et al. ASTE1 promotes shieldin-complex-mediated DNA repair by attenuating end resection. Nature Cell Biology. PMID 34354233 DOI: 10.1038/s41556-021-00723-9   
2021 Wang J. Genome Analysis of Programmed DNA Elimination in Parasitic Nematodes. Methods in Molecular Biology (Clifton, N.J.). 2369: 251-261. PMID 34313993 DOI: 10.1007/978-1-0716-1681-9_14   
2021 Ackerson SM, Romney C, Schuck PL, Stewart JA. To Join or Not to Join: Decision Points Along the Pathway to Double-Strand Break Repair vs. Chromosome End Protection. Frontiers in Cell and Developmental Biology. 9: 708763. PMID 34322492 DOI: 10.3389/fcell.2021.708763   
2021 Serra-Cardona A, Yu C, Zhang X, Hua X, Yao Y, Zhou J, Gan H, Zhang Z. A mechanism for Rad53 to couple leading- and lagging-strand DNA synthesis under replication stress in budding yeast. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34531325 DOI: 10.1073/pnas.2109334118   
2021 Xuan J, Gitareja K, Brajanovski N, Sanij E. Harnessing the Nucleolar DNA Damage Response in Cancer Therapy. Genes. 12. PMID 34440328 DOI: 10.3390/genes12081156   
2021 Wassing IE, Graham E, Saayman X, Rampazzo L, Ralf C, Bassett A, Esashi F. The RAD51 recombinase protects mitotic chromatin in human cells. Nature Communications. 12: 5380. PMID 34508092 DOI: 10.1038/s41467-021-25643-y   
2021 Dhingra N, Zhao X. Advances in SUMO-based regulation of homologous recombination. Current Opinion in Genetics & Development. 71: 114-119. PMID 34333341 DOI: 10.1016/j.gde.2021.07.007   
2021 Clarke RS, Ha KP, Edwards AM. RexAB promotes the survival of exposed to multiple classes of antibiotics. Antimicrobial Agents and Chemotherapy. AAC0059421. PMID 34310219 DOI: 10.1128/AAC.00594-21   
2021 Mahapatra K, Banerjee S, De S, Mitra M, Roy P, Roy S. An Insight Into the Mechanism of Plant Organelle Genome Maintenance and Implications of Organelle Genome in Crop Improvement: An Update. Frontiers in Cell and Developmental Biology. 9: 671698. PMID 34447743 DOI: 10.3389/fcell.2021.671698   
2021 Gao Y, Zheng Y, Sanche L. Low-Energy Electron Damage to Condensed-Phase DNA and Its Constituents. International Journal of Molecular Sciences. 22. PMID 34360644 DOI: 10.3390/ijms22157879   
2021 Mir US, Bhat A, Mushtaq A, Pandita S, Altaf M, Pandita TK. Role of histone acetyltransferases MOF and Tip60 in genome stability. Dna Repair. 107: 103205. PMID 34399315 DOI: 10.1016/j.dnarep.2021.103205   
2021 Jia W, Kim SH, Scalf MA, Tonzi P, Millikin RJ, Guns WM, Liu L, Mastrocola AS, Smith LM, Huang TT, Tibbetts RS. Fused in sarcoma (FUS) regulates DNA replication timing and kinetics. The Journal of Biological Chemistry. 101049. PMID 34375640 DOI: 10.1016/j.jbc.2021.101049   
2021 Wiktor J, Gynnå AH, Leroy P, Larsson J, Coceano G, Testa I, Elf J. RecA finds homologous DNA by reduced dimensionality search. Nature. PMID 34471288 DOI: 10.1038/s41586-021-03877-6   
2021 Cha SW. Generating Nonmosaic Mutants in Using CRISPR-Cas in Oocytes. Cold Spring Harbor Protocols. PMID 34244351 DOI: 10.1101/pdb.prot106989   
2021 Cha SW. Generating Nonmosaic Mutants in Using CRISPR-Cas in Oocytes. Cold Spring Harbor Protocols. PMID 34244351 DOI: 10.1101/pdb.prot106989   
2021 Lin T, Zhang L, Wu M, Jiang D, Li Z, Yang Z. Repair of Hypoxanthine in DNA Revealed by DNA Glycosylases and Endonucleases From Hyperthermophilic Archaea. Frontiers in Microbiology. 12: 736915. PMID 34531846 DOI: 10.3389/fmicb.2021.736915   
2021 Jagannathan M, Yamashita YM. Defective satellite DNA clustering into chromocenters underlies hybrid incompatibility in Drosophila. Molecular Biology and Evolution. PMID 34302471 DOI: 10.1093/molbev/msab221   
2021 Jagannathan M, Yamashita YM. Defective satellite DNA clustering into chromocenters underlies hybrid incompatibility in Drosophila. Molecular Biology and Evolution. PMID 34302471 DOI: 10.1093/molbev/msab221   
2021 Singh AK, Kumar SL, Beniwal R, Mohanty A, Kushwaha B, Rao HBDP. Local DNA synthesis is critical for DNA repair during oocyte maturation. Journal of Cell Science. PMID 34415018 DOI: 10.1242/jcs.257774   
2021 Jung KW, Jung JH, Park HY. Functional Roles of Homologous Recombination and Non-Homologous End Joining in DNA Damage Response and Microevolution in . Journal of Fungi (Basel, Switzerland). 7. PMID 34356945 DOI: 10.3390/jof7070566   
2021 Fujita T, Nagata S, Fujii H. Protein or ribonucleoprotein-mediated blocking of recombinase polymerase amplification enables the discrimination of nucleotide and epigenetic differences between cell populations. Communications Biology. 4: 988. PMID 34413466 DOI: 10.1038/s42003-021-02503-5   
2021 Foo TK, Vincelli G, Huselid E, Her J, Zheng H, Simhadri S, Wang M, Huo Y, Li T, Yu X, Li H, Zhao W, Bunting SF, Xia B. ATR/ATM-mediated phosphorylation of BRCA1 T1394 promotes homologous recombinational repair and G2/M checkpoint maintenance. Cancer Research. PMID 34301763 DOI: 10.1158/0008-5472.CAN-20-2723   
2021 Dhar GA, Saha S, Mitra P, Nag Chaudhuri R. DNA methylation and regulation of gene expression: Guardian of our health. The Nucleus : An International Journal of Cytology and Allied Topics. 1-12. PMID 34421129 DOI: 10.1007/s13237-021-00367-y   
2021 Ueno H, Sawada H, Soga N, Sano M, Nara S, Tabata KV, Su'etsugu M, Noji H. Amplification of over 100 kbp DNA from Single Template Molecules in Femtoliter Droplets. Acs Synthetic Biology. PMID 34406762 DOI: 10.1021/acssynbio.0c00584   
2021 Ogunbunmi ET, Roznowski AP, Fane BA. The Effects of Packaged, but Misguided, Single-Stranded DNA Genomes Are Transmitted to the Outer Surface of the øX174 Capsid. Journal of Virology. JVI0088321. PMID 34232738 DOI: 10.1128/JVI.00883-21   
2021 Berger M, Wortmann L, Buchgraber P, Lücking U, Zitzmann-Kolbe S, Wengner AM, Bader B, Bömer U, Briem H, Eis K, Rehwinkel H, Bartels F, Moosmayer D, Eberspächer U, Lienau P, et al. BAY-8400: A Novel Potent and Selective DNA-PK Inhibitor which Shows Synergistic Efficacy in Combination with Targeted Alpha Therapies. Journal of Medicinal Chemistry. PMID 34428039 DOI: 10.1021/acs.jmedchem.1c00762   
2021 Yoshua SB, Watson GD, Howard JAL, Velasco-Berrelleza V, Leake MC, Noy A. Integration host factor bends and bridges DNA in a multiplicity of binding modes with varying specificity. Nucleic Acids Research. PMID 34352078 DOI: 10.1093/nar/gkab641   
2021 Liu M, Zhang W, Xin C, Yin J, Shang Y, Ai C, Li J, Meng FL, Hu J. Global detection of DNA repair outcomes induced by CRISPR-Cas9. Nucleic Acids Research. PMID 34365511 DOI: 10.1093/nar/gkab686   
2021 Fernandez A, O'Leary C, O'Byrne KJ, Burgess J, Richard DJ, Suraweera A. Epigenetic Mechanisms in DNA Double Strand Break Repair: A Clinical Review. Frontiers in Molecular Biosciences. 8: 685440. PMID 34307454 DOI: 10.3389/fmolb.2021.685440   
2021 Kemiha S, Poli J, Lin YL, Lengronne A, Pasero P. Toxic R-loops: Cause or consequence of replication stress? Dna Repair. 107: 103199. PMID 34399314 DOI: 10.1016/j.dnarep.2021.103199   
2021 Ge J, Ngo LP, Kaushal S, Tay IJ, Thadhani E, Kay JE, Mazzucato P, Chow DN, Fessler JL, Weingeist DM, Sobol RW, Samson LD, Floyd SR, Engelward BP. CometChip enables parallel analysis of multiple DNA repair activities. Dna Repair. 106: 103176. PMID 34365116 DOI: 10.1016/j.dnarep.2021.103176   
2021 Fan H, Huang LY, Tong X, Yang LJ, Shi JJ, Jiao J, Xu HQ, Li YC, Wang DY. A competitive PCR-based method to detect a single copy of T-DNA insertion in transformants. Physiologia Plantarum. PMID 34310717 DOI: 10.1111/ppl.13513   
2021 Fan H, Huang LY, Tong X, Yang LJ, Shi JJ, Jiao J, Xu HQ, Li YC, Wang DY. A competitive PCR-based method to detect a single copy of T-DNA insertion in transformants. Physiologia Plantarum. PMID 34310717 DOI: 10.1111/ppl.13513   
2021 Atkin ND, Raimer HM, Wang Z, Zang C, Wang YH. Assessing acute myeloid leukemia susceptibility in rearrangement-driven patients by DNA breakage at topoisomerase II and CCCTC-binding factor/cohesin binding sites. Genes, Chromosomes & Cancer. PMID 34405474 DOI: 10.1002/gcc.22993   
2021 Taylor LJ, Dothard MI, Rubel MA, Allen AA, Hwang Y, Roche AM, Graham-Wooten J, Fitzgerald AS, Khatib LA, Ranciaro A, Thompson SR, Beggs WR, Campbell MC, Mokone GG, Mpoloka SW, et al. Redondovirus diversity and evolution on global, individual, and molecular scales. Journal of Virology. JVI0081721. PMID 34406857 DOI: 10.1128/JVI.00817-21   
2021 Wang Q, Xu J, Pu X, Lv H, Liu Y, Ma H, Wu F, Wang Q, Feng X, Liu T, Tang Q, Liu Y, Lu Y. Maize DNA Methylation in Response to Drought Stress Is Involved in Target Gene Expression and Alternative Splicing. International Journal of Molecular Sciences. 22. PMID 34361051 DOI: 10.3390/ijms22158285   
2021 Lee SY, Kim JJ, Miller KM. Bromodomain proteins: protectors against endogenous DNA damage and facilitators of genome integrity. Experimental & Molecular Medicine. PMID 34548613 DOI: 10.1038/s12276-021-00673-0