Jeffry D. Sander, Ph.D. - Publications

Affiliations: 
2008 Genetics, Development and Cell Biology Iowa State University, Ames, IA, United States 
Area:
Bioinformatics Biology

38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Hubbard BP, Badran AH, Zuris JA, Guilinger JP, Davis KM, Chen L, Tsai SQ, Sander JD, Joung JK, Liu DR. Continuous directed evolution of DNA-binding proteins to improve TALEN specificity. Nature Methods. 12: 939-42. PMID 26258293 DOI: 10.1038/nmeth.3515  0.48
2015 Rogers JM, Barrera LA, Reyon D, Sander JD, Kellis M, Joung JK, Bulyk ML. Context influences on TALE-DNA binding revealed by quantitative profiling. Nature Communications. 6: 7440. PMID 26067805 DOI: 10.1038/ncomms8440  0.48
2015 Gjini E, Mansour MR, Sander JD, Moritz N, Nguyen AT, Kesarsing M, Gans E, He S, Chen S, Ko M, Kuang YY, Yang S, Zhou Y, Rodig S, Zon LI, et al. A zebrafish model of myelodysplastic syndrome produced through tet2 genomic editing. Molecular and Cellular Biology. 35: 789-804. PMID 25512612 DOI: 10.1128/MCB.00971-14  0.48
2014 Sander JD, Joung JK. CRISPR-Cas systems for editing, regulating and targeting genomes. Nature Biotechnology. 32: 347-55. PMID 24584096 DOI: 10.1038/nbt.2842  0.48
2014 Guilinger JP, Pattanayak V, Reyon D, Tsai SQ, Sander JD, Joung JK, Liu DR. Broad specificity profiling of TALENs results in engineered nucleases with improved DNA-cleavage specificity Nature Methods. 11: 429-435. PMID 24531420 DOI: 10.1038/nmeth.2845  0.48
2014 Fu Y, Sander JD, Reyon D, Cascio VM, Joung JK. Improving CRISPR-Cas nuclease specificity using truncated guide RNAs. Nature Biotechnology. 32: 279-84. PMID 24463574 DOI: 10.1038/nbt.2808  0.48
2013 Maeder ML, Angstman JF, Richardson ME, Linder SJ, Cascio VM, Tsai SQ, Ho QH, Sander JD, Reyon D, Bernstein BE, Costello JF, Wilkinson MF, Joung JK. Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins. Nature Biotechnology. 31: 1137-42. PMID 24108092 DOI: 10.1038/nbt.2726  0.48
2013 Qi Y, Li X, Zhang Y, Starker CG, Baltes NJ, Zhang F, Sander JD, Reyon D, Joung JK, Voytas DF. Targeted deletion and inversion of tandemly arrayed genes in Arabidopsis thaliana using zinc finger nucleases. G3 (Bethesda, Md.). 3: 1707-15. PMID 23979943 DOI: 10.1534/g3.113.006270  0.48
2013 Sander JD, Ramirez CL, Linder SJ, Pattanayak V, Shoresh N, Ku M, Foden JA, Reyon D, Bernstein BE, Liu DR, Joung JK. In silico abstraction of zinc finger nuclease cleavage profiles reveals an expanded landscape of off-target sites. Nucleic Acids Research. 41: e181. PMID 23945932 DOI: 10.1093/nar/gkt716  0.48
2013 Hwang WY, Fu Y, Reyon D, Maeder ML, Kaini P, Sander JD, Joung JK, Peterson RT, Yeh JR. Heritable and precise zebrafish genome editing using a CRISPR-Cas system. Plos One. 8: e68708. PMID 23874735 DOI: 10.1371/journal.pone.0068708  0.48
2013 Reyon D, Maeder ML, Khayter C, Tsai SQ, Foley JE, Sander JD, Joung JK. Engineering customized TALE nucleases (TALENs) and TALE transcription factors by fast ligation-based automatable solid-phase high-throughput (FLASH) assembly. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 12.16. PMID 23821439 DOI: 10.1002/0471142727.mb1216s103  0.48
2013 Fu Y, Foden JA, Khayter C, Maeder ML, Reyon D, Joung JK, Sander JD. High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nature Biotechnology. 31: 822-6. PMID 23792628 DOI: 10.1038/nbt.2623  0.48
2013 Li X, Burnight ER, Cooney AL, Malani N, Brady T, Sander JD, Staber J, Wheelan SJ, Joung JK, McCray PB, Bushman FD, Sinn PL, Craig NL. piggyBac transposase tools for genome engineering. Proceedings of the National Academy of Sciences of the United States of America. 110: E2279-87. PMID 23723351 DOI: 10.1073/pnas.1305987110  0.48
2013 Maeder ML, Linder SJ, Reyon D, Angstman JF, Fu Y, Sander JD, Joung JK. Robust, synergistic regulation of human gene expression using TALE activators. Nature Methods. 10: 243-5. PMID 23396285 DOI: 10.1038/nmeth.2366  0.48
2013 Hwang WY, Fu Y, Reyon D, Maeder ML, Tsai SQ, Sander JD, Peterson RT, Yeh JR, Joung JK. Efficient genome editing in zebrafish using a CRISPR-Cas system. Nature Biotechnology. 31: 227-9. PMID 23360964 DOI: 10.1038/nbt.2501  0.48
2013 Joung JK, Sander JD. TALENs: a widely applicable technology for targeted genome editing. Nature Reviews. Molecular Cell Biology. 14: 49-55. PMID 23169466 DOI: 10.1038/nrm3486  0.48
2012 Reyon D, Khayter C, Regan MR, Joung JK, Sander JD. Engineering designer transcription activator-like effector nucleases (TALENs) by REAL or REAL-Fast assembly. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 12.15. PMID 23026907 DOI: 10.1002/0471142727.mb1215s100  0.48
2012 Cade L, Reyon D, Hwang WY, Tsai SQ, Patel S, Khayter C, Joung JK, Sander JD, Peterson RT, Yeh JR. Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs. Nucleic Acids Research. 40: 8001-10. PMID 22684503 DOI: 10.1093/nar/gks518  0.48
2012 Moore FE, Reyon D, Sander JD, Martinez SA, Blackburn JS, Khayter C, Ramirez CL, Joung JK, Langenau DM. Improved somatic mutagenesis in zebrafish using transcription activator-like effector nucleases (TALENs). Plos One. 7: e37877. PMID 22655075 DOI: 10.1371/journal.pone.0037877  0.48
2012 Reyon D, Tsai SQ, Khayter C, Foden JA, Sander JD, Joung JK. FLASH assembly of TALENs for high-throughput genome editing. Nature Biotechnology. 30: 460-5. PMID 22484455 DOI: 10.1038/nbt.2170  0.48
2011 Sander JD, Maeder ML, Joung JK. Engineering designer nucleases with customized cleavage specificities. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit12.13. PMID 21987054 DOI: 10.1002/0471142727.mb1213s96  0.48
2011 Sander JD, Yeh JR, Peterson RT, Joung JK. Engineering zinc finger nucleases for targeted mutagenesis of zebrafish. Methods in Cell Biology. 104: 51-8. PMID 21924156 DOI: 10.1016/B978-0-12-374814-0.00003-3  0.48
2011 Sander JD, Cade L, Khayter C, Reyon D, Peterson RT, Joung JK, Yeh JR. Targeted gene disruption in somatic zebrafish cells using engineered TALENs. Nature Biotechnology. 29: 697-8. PMID 21822241 DOI: 10.1038/nbt.1934  0.48
2011 Curtin SJ, Zhang F, Sander JD, Haun WJ, Starker C, Baltes NJ, Reyon D, Dahlborg EJ, Goodwin MJ, Coffman AP, Dobbs D, Joung JK, Voytas DF, Stupar RM. Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases. Plant Physiology. 156: 466-73. PMID 21464476 DOI: 10.1104/pp.111.172981  0.48
2011 Reyon D, Kirkpatrick JR, Sander JD, Zhang F, Voytas DF, Joung JK, Dobbs D, Coffman CR. ZFNGenome: a comprehensive resource for locating zinc finger nuclease target sites in model organisms. Bmc Genomics. 12: 83. PMID 21276248 DOI: 10.1186/1471-2164-12-83  0.48
2011 Sander JD, Dahlborg EJ, Goodwin MJ, Cade L, Zhang F, Cifuentes D, Curtin SJ, Blackburn JS, Thibodeau-Beganny S, Qi Y, Pierick CJ, Hoffman E, Maeder ML, Khayter C, Reyon D, et al. Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA). Nature Methods. 8: 67-9. PMID 21151135 DOI: 10.1038/nmeth.1542  0.48
2010 Sander JD, Reyon D, Maeder ML, Foley JE, Thibodeau-Beganny S, Li X, Regan MR, Dahlborg EJ, Goodwin MJ, Fu F, Voytas DF, Joung JK, Dobbs D. Predicting success of oligomerized pool engineering (OPEN) for zinc finger target site sequences. Bmc Bioinformatics. 11: 543. PMID 21044337 DOI: 10.1186/1471-2105-11-543  0.48
2010 Sander JD, Maeder ML, Reyon D, Voytas DF, Joung JK, Dobbs D. ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool. Nucleic Acids Research. 38: W462-8. PMID 20435679 DOI: 10.1093/nar/gkq319  0.48
2009 Maeder ML, Thibodeau-Beganny S, Sander JD, Voytas DF, Joung JK. Oligomerized pool engineering (OPEN): an 'open-source' protocol for making customized zinc-finger arrays. Nature Protocols. 4: 1471-501. PMID 19798082 DOI: 10.1038/nprot.2009.98  0.48
2009 Foley JE, Yeh JR, Maeder ML, Reyon D, Sander JD, Peterson RT, Joung JK. Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN). Plos One. 4: e4348. PMID 19198653 DOI: 10.1371/journal.pone.0004348  0.48
2009 Sander JD, Zaback P, Joung JK, Voytas DF, Dobbs D. An affinity-based scoring scheme for predicting DNA-binding activities of modularly assembled zinc-finger proteins. Nucleic Acids Research. 37: 506-15. PMID 19056825 DOI: 10.1093/nar/gkn962  0.48
2009 Fu F, Sander JD, Maeder M, Thibodeau-Beganny S, Joung JK, Dobbs D, Miller L, Voytas DF. Zinc Finger Database (ZiFDB): a repository for information on C2H2 zinc fingers and engineered zinc-finger arrays. Nucleic Acids Research. 37: D279-83. PMID 18812396 DOI: 10.1093/nar/gkn606  0.48
2008 Maeder ML, Thibodeau-Beganny S, Osiak A, Wright DA, Anthony RM, Eichtinger M, Jiang T, Foley JE, Winfrey RJ, Townsend JA, Unger-Wallace E, Sander JD, Müller-Lerch F, Fu F, Pearlberg J, et al. Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification. Molecular Cell. 31: 294-301. PMID 18657511 DOI: 10.1016/j.molcel.2008.06.016  0.48
2008 Ramirez CL, Foley JE, Wright DA, Müller-Lerch F, Rahman SH, Cornu TI, Winfrey RJ, Sander JD, Fu F, Townsend JA, Cathomen T, Voytas DF, Joung JK. Unexpected failure rates for modular assembly of engineered zinc fingers. Nature Methods. 5: 374-5. PMID 18446154 DOI: 10.1038/nmeth0508-374  0.48
2008 Lee JH, Hamilton M, Gleeson C, Caragea C, Zaback P, Sander JD, Li X, Wu F, Terribilini M, Honavar V, Dobbs D. Striking similarities in diverse telomerase proteins revealed by combining structure prediction and machine learning approaches. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 501-12. PMID 18229711  0.48
2007 Sander JD, Zaback P, Joung JK, Voytas DF, Dobbs D. Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool. Nucleic Acids Research. 35: W599-605. PMID 17526515 DOI: 10.1093/nar/gkm349  0.48
2007 Terribilini M, Sander JD, Lee JH, Zaback P, Jernigan RL, Honavar V, Dobbs D. RNABindR: a server for analyzing and predicting RNA-binding sites in proteins. Nucleic Acids Research. 35: W578-84. PMID 17483510 DOI: 10.1093/nar/gkm294  0.48
2006 Wright DA, Thibodeau-Beganny S, Sander JD, Winfrey RJ, Hirsh AS, Eichtinger M, Fu F, Porteus MH, Dobbs D, Voytas DF, Joung JK. Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly. Nature Protocols. 1: 1637-52. PMID 17406455 DOI: 10.1038/nprot.2006.259  0.48
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