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Viacheslav Fofanov, Ph.D. - Publications

Affiliations: 
2008 Rice University, Houston, TX 
Area:
Statistics, Biostatistics Biology
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10 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2010 Bryant DH, Moll M, Chen BY, Fofanov VY, Kavraki LE. Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction. Bmc Bioinformatics. 11: 242. PMID 20459833 DOI: 10.1186/1471-2105-11-242  0.477
2008 Kristensen DM, Ward RM, Lisewski AM, Erdin S, Chen BY, Fofanov VY, Kimmel M, Kavraki LE, Lichtarge O. Prediction of enzyme function based on 3D templates of evolutionarily important amino acids. Bmc Bioinformatics. 9: 17. PMID 18190718 DOI: 10.1186/1471-2105-9-17  0.57
2008 Fofanov VY, Chen BY, Bryant DH, Moll M, Lichtarge O, Kavraki L, Kimmel M. A statistical model to correct systematic bias introduced by algorithmic thresholds in protein structural comparison algorithms Proceedings - 2008 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw. 1-8. DOI: 10.1109/BIBMW.2008.4686202  0.466
2007 Chen BY, Bryant DH, Cruess AE, Bylund JH, Fofanov VY, Kristensen DM, Kimmel M, Lichtarge O, Kavraki LE. Composite motifs integrating multiple protein structures increase sensitivity for function prediction. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 6: 343-55. PMID 17951837  0.619
2007 Chen BY, Fofanov VY, Bryant DH, Dodson BD, Kristensen DM, Lisewski AM, Kimmel M, Lichtarge O, Kavraki LE. The MASH pipeline for protein function prediction and an algorithm for the geometric refinement of 3D motifs. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 791-816. PMID 17691895 DOI: 10.1089/Cmb.2007.R017  0.635
2007 Chen BY, Bryant DH, Fofanov VY, Kristensen DM, Cruess AE, Kimmel M, Lichtarge O, Kavraki LE. Cavity scaling: automated refinement of cavity-aware motifs in protein function prediction. Journal of Bioinformatics and Computational Biology. 5: 353-82. PMID 17589966 DOI: 10.1142/S021972000700276X  0.591
2006 Chen BY, Bryant DH, Fofanov VY, Kristensen DM, Cruess AE, Kimmel M, Lichtarge O, Kavraki LE. Cavity-aware motifs reduce false positives in protein function prediction. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 311-23. PMID 17369649  0.571
2006 Kristensen DM, Chen BY, Fofanov VY, Ward RM, Lisewski AM, Kimmel M, Kavraki LE, Lichtarge O. Recurrent use of evolutionary importance for functional annotation of proteins based on local structural similarity. Protein Science : a Publication of the Protein Society. 15: 1530-6. PMID 16672239 DOI: 10.1110/Ps.062152706  0.61
2006 Chen BY, Fofanov VY, Bryant DH, Dodson BD, Kristensen DM, Lisewski AM, Kimmel M, Lichtarge O, Kavraki LE. Geometric sieving: Automated distributed optimization of 3D motifs for protein function prediction Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3909: 500-515.  0.629
2005 Chen BY, Fofanov VY, Kristensen DM, Kimmel M, Lichtarge O, Kavraki LE. Algorithms for structural comparison and statistical analysis of 3D protein motifs. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 334-45. PMID 15759639  0.603
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