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Haining Lin, Ph.D. - Publications

Affiliations: 
2009 Genetics, Development and Cell Biology Iowa State University, Ames, IA, United States 
Area:
Bioinformatics Biology
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23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ramu P, Srivastava RK, Sanyal A, Fengler K, Cao J, Zhang Y, Nimkar M, Gerke J, Shreedharan S, Llaca V, May G, Peterson-Burch B, Lin H, King M, Das S, et al. Improved pearl millet genomes representing the global heterotic pool offer a framework for molecular breeding applications. Communications Biology. 6: 902. PMID 37667032 DOI: 10.1038/s42003-023-05258-3  0.483
2021 Deschamps S, Crow JA, Chaidir N, Peterson-Burch B, Kumar S, Lin H, Zastrow-Hayes G, May GD. Chromatin loop anchors contain core structural components of the gene expression machinery in maize. Bmc Genomics. 22: 23. PMID 33407087 DOI: 10.1186/s12864-020-07324-0  0.445
2018 Deschamps S, Zhang Y, Llaca V, Ye L, Sanyal A, King M, May G, Lin H. A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping. Nature Communications. 9: 4844. PMID 30451840 DOI: 10.1038/S41467-018-07271-1  0.515
2015 Zastrow-Hayes GM, Lin H, Sigmund AL, Hoffman JL, Alarcon CM, Hayes KR, Richmond TA, Jeddeloh JA, May GD, Beatty MK. Southern-by-Sequencing: A Robust Screening Approach for Molecular Characterization of Genetically Modified Crops. The Plant Genome. 8: eplantgenome2014.08.. PMID 33228291 DOI: 10.3835/plantgenome2014.08.0037  0.353
2015 Zastrow-Hayes GM, Lin H, Sigmund AL, Hoffman JL, Alarcon CM, Hayes KR, Richmond TA, Jeddeloh JA, May GD, Beatty MK. Southern-by-sequencing: A robust screening approach for molecular characterization of genetically modified crops Plant Genome. 8. DOI: 10.3835/Plantgenome2014.08.0037  0.448
2013 Gonzalez-Jorge S, Ha SH, Magallanes-Lundback M, Gilliland LU, Zhou A, Lipka AE, Nguyen YN, Angelovici R, Lin H, Cepela J, Little H, Buell CR, Gore MA, Dellapenna D. Carotenoid cleavage dioxygenase4 is a negative regulator of β-carotene content in Arabidopsis seeds. The Plant Cell. 25: 4812-26. PMID 24368792 DOI: 10.1105/Tpc.113.119677  0.536
2013 Angelovici R, Lipka AE, Deason N, Gonzalez-Jorge S, Lin H, Cepela J, Buell R, Gore MA, Dellapenna D. Genome-wide analysis of branched-chain amino acid levels in Arabidopsis seeds. The Plant Cell. 25: 4827-43. PMID 24368787 DOI: 10.1105/Tpc.113.119370  0.35
2013 Kawahara Y, de la Bastide M, Hamilton JP, Kanamori H, McCombie WR, Ouyang S, Schwartz DC, Tanaka T, Wu J, Zhou S, Childs KL, Davidson RM, Lin H, Quesada-Ocampo L, Vaillancourt B, et al. Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Rice (New York, N.Y.). 6: 4. PMID 24280374 DOI: 10.1186/1939-8433-6-4  0.66
2013 Lipka AE, Gore MA, Magallanes-Lundback M, Mesberg A, Lin H, Tiede T, Chen C, Buell CR, Buckler ES, Rocheford T, DellaPenna D. Genome-wide association study and pathway-level analysis of tocochromanol levels in maize grain. G3 (Bethesda, Md.). 3: 1287-99. PMID 23733887 DOI: 10.1534/G3.113.006148  0.64
2012 Davidson RM, Gowda M, Moghe G, Lin H, Vaillancourt B, Shiu SH, Jiang N, Robin Buell C. Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution. The Plant Journal : For Cell and Molecular Biology. 71: 492-502. PMID 22443345 DOI: 10.1111/J.1365-313X.2012.05005.X  0.634
2011 Massa AN, Childs KL, Lin H, Bryan GJ, Giuliano G, Buell CR. The transcriptome of the reference potato genome Solanum tuberosum Group Phureja clone DM1-3 516R44. Plos One. 6: e26801. PMID 22046362 DOI: 10.1371/Journal.Pone.0026801  0.695
2011 Xu X, Pan S, Cheng S, Zhang B, Mu D, Ni P, Zhang G, Yang S, Li R, Wang J, Orjeda G, Guzman F, Torres M, Lozano R, ... ... Lin H, et al. Genome sequence and analysis of the tuber crop potato. Nature. 475: 189-95. PMID 21743474 DOI: 10.1038/Nature10158  0.709
2011 Sekhon RS, Lin H, Childs KL, Hansey CN, Buell CR, de Leon N, Kaeppler SM. Genome-wide atlas of transcription during maize development. The Plant Journal : For Cell and Molecular Biology. 66: 553-63. PMID 21299659 DOI: 10.1111/J.1365-313X.2011.04527.X  0.668
2011 Davidson RM, Hansey CN, Gowda M, Childs KL, Lin H, Vaillancourt B, Sekhon RS, de Leon N, Kaeppler SM, Jiang N, Buell CR. Utility of RNA Sequencing for Analysis of Maize Reproductive Transcriptomes The Plant Genome. 4: 191-203. DOI: 10.3835/Plantgenome2011.05.0015  0.698
2010 Lévesque CA, Brouwer H, Cano L, Hamilton JP, Holt C, Huitema E, Raffaele S, Robideau GP, Thines M, Win J, Zerillo MM, Beakes GW, Boore JL, Busam D, Dumas B, ... ... Lin H, et al. Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. Genome Biology. 11: R73. PMID 20626842 DOI: 10.1186/Gb-2010-11-7-R73  0.72
2010 Lin H, Moghe G, Ouyang S, Iezzoni A, Shiu SH, Gu X, Buell CR. Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana. Bmc Evolutionary Biology. 10: 41. PMID 20152032 DOI: 10.1186/1471-2148-10-41  0.716
2009 Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Lee Y, Malek R, Wang A, Yuan Q, Haas B, Wortman J, Buell CR. Annotation of the rice genome International Rice Research Notes. 31. DOI: 10.3860/Irrn.V31I2.1141  0.659
2008 Lin H, Ouyang S, Egan A, Nobuta K, Haas BJ, Zhu W, Gu X, Silva JC, Meyers BC, Buell CR. Characterization of paralogous protein families in rice. Bmc Plant Biology. 8: 18. PMID 18284697 DOI: 10.1186/1471-2229-8-18  0.703
2007 Campbell MA, Zhu W, Jiang N, Lin H, Ouyang S, Childs KL, Haas BJ, Hamilton JP, Buell CR. Identification and characterization of lineage-specific genes within the poaceae Plant Physiology. 145: 1311-1322. PMID 17951464 DOI: 10.1104/Pp.107.104513  0.712
2007 Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell CR. The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Research. 35: D883-7. PMID 17145706 DOI: 10.1093/Nar/Gkl976  0.725
2006 Lin H, Zhu W, Silva JC, Gu X, Buell CR. Intron gain and loss in segmentally duplicated genes in rice. Genome Biology. 7: R41. PMID 16719932 DOI: 10.1186/Gb-2006-7-5-R41  0.703
2005 Yuan Q, Ouyang S, Wang A, Zhu W, Maiti R, Lin H, Hamilton J, Haas B, Sultana R, Cheung F, Wortman J, Buell CR. The institute for genomic research Osa1 rice genome annotation database. Plant Physiology. 138: 18-26. PMID 15888674 DOI: 10.1104/Pp.104.059063  0.735
2005 Choisne N, Demange N, Orjeda G, Samain S, D'Hont A, Cattolico L, Pelletier E, Couloux A, Segurens B, Wincker P, Scarpelli C, Weissenbach J, Salanoubat M, Singh NK, Mohapatra T, ... ... Lin H, et al. The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications Bmc Biology. 3. DOI: 10.1186/1741-7007-3-20  0.684
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