Deborah Johnson - Related publications

1985-2013 Genetic, Molecular, and Cell Biology University of Southern California, Los Angeles, CA, United States 
 2013- Baylor College of Medicine, Houston, TX 
Cell Biology, Genetics, Molecular Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Jensen BC, Phan IQ, McDonald JR, Sur A, Gillespie MA, Ranish JA, Parsons M, Myler PJ. Chromatin-Associated Protein Complexes Link DNA Base J and Transcription Termination in . Msphere. 6. PMID 33627513 DOI: 10.1128/mSphere.01204-20   
2021 Sawicka A, Villamil G, Lidschreiber M, Darzacq X, Dugast-Darzacq C, Schwalb B, Cramer P. Transcription activation depends on the length of the RNA polymerase II C-terminal domain. The Embo Journal. e107015. PMID 33555055 DOI: 10.15252/embj.2020107015   
2021 Doenier J, Lynch T, Kimble J, Aoki ST. An improved in vivo tethering assay with single molecule FISH reveals that a nematode Nanos enhances reporter expression and mRNA stability. Rna (New York, N.Y.). PMID 33727224 DOI: 10.1261/rna.078693.121   
2021 Li H, Chen Y, Zhang J, Lin Y, Yang Z, Tan J, Qiao W. Identification of the internal ribosome entry sites in the 5'‑untranslated region of the gene. International Journal of Molecular Medicine. 47. PMID 33604677 DOI: 10.3892/ijmm.2021.4889   
2021 Caizzi L, Monteiro-Martins S, Schwalb B, Lysakovskaia K, Schmitzova J, Sawicka A, Chen Y, Lidschreiber M, Cramer P. Efficient RNA polymerase II pause release requires U2 snRNP function. Molecular Cell. PMID 33689748 DOI: 10.1016/j.molcel.2021.02.016   
2021 Kathare PK, Huq E. Light-regulated pre-mRNA splicing in plants. Current Opinion in Plant Biology. 63: 102037. PMID 33823333 DOI: 10.1016/j.pbi.2021.102037   
2021 Shen H, Luo G, Chen Q. Long noncoding RNAs as tumorigenic factors and therapeutic targets for renal cell carcinoma. Cancer Cell International. 21: 110. PMID 33593347 DOI: 10.1186/s12935-021-01805-2   
2021 Chen L, Chou CL, Knepper MA. A Comprehensive Map of mRNAs and Their Isoforms across All 14 Renal Tubule Segments of Mouse. Journal of the American Society of Nephrology : Jasn. PMID 33769951 DOI: 10.1681/ASN.2020101406   
2021 Chen SL, Zhu ZX, Yang X, Liu LL, He YF, Yang MM, Guan XY, Wang X, Yun JP. Cleavage and Polyadenylation Specific Factor 1 Promotes Tumor Progression Alternative Polyadenylation and Splicing in Hepatocellular Carcinoma. Frontiers in Cell and Developmental Biology. 9: 616835. PMID 33748106 DOI: 10.3389/fcell.2021.616835   
2021 Huffines AK, Edwards YJK, Schneider DA. Spt4 Promotes Pol I Processivity and Transcription Elongation. Genes. 12. PMID 33809333 DOI: 10.3390/genes12030413   
2021 Xie W, Zhu H, Zhao M, Wang L, Li S, Zhao C, Zhou Y, Zhu B, Jiang X, Liu W, Ren C. Crucial roles of different RNA-binding hnRNP proteins in Stem Cells. International Journal of Biological Sciences. 17: 807-817. PMID 33767590 DOI: 10.7150/ijbs.55120   
2021 Samarasinghe KTG, Jaime-Figueroa S, Burgess M, Nalawansha DA, Dai K, Hu Z, Bebenek A, Holley SA, Crews CM. Targeted degradation of transcription factors by TRAFTACs: TRAnscription Factor TArgeting Chimeras. Cell Chemical Biology. PMID 33836141 DOI: 10.1016/j.chembiol.2021.03.011   
2021 Samarasinghe KTG, Jaime-Figueroa S, Burgess M, Nalawansha DA, Dai K, Hu Z, Bebenek A, Holley SA, Crews CM. Targeted degradation of transcription factors by TRAFTACs: TRAnscription Factor TArgeting Chimeras. Cell Chemical Biology. PMID 33836141 DOI: 10.1016/j.chembiol.2021.03.011   
2021 Wang H, Li J, Wang S, Lu X, Zhang G, Zhuang Y, Li L, Wang W, Lin P, Chen C, Wang H, Chen Q, Jiang Y, Qu J, Xu L. Contribution of structural accessibility to the cooperative relationship of TF-lncRNA in myopia. Briefings in Bioinformatics. PMID 33834194 DOI: 10.1093/bib/bbab082   
2021 Kwon PK, Kim HM, Kang B, Kim SW, Hwang SM, Im SH, Roh TY, Kim KT. hnRNP K supports the maintenance of RORγ circadian rhythm through ERK signaling. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 35: e21507. PMID 33724572 DOI: 10.1096/fj.202002076R   
2021 Xu X, Mann M, Qiao D, Brasier AR. Alternative mRNA Processing of Innate Response Pathways in Respiratory Syncytial Virus (RSV) Infection. Viruses. 13. PMID 33572560 DOI: 10.3390/v13020218   
2021 Yu L, Marchisio MA. Synthetic Transcriptional Networks Harnessing dCas12a and Type V-A anti-CRISPR Proteins. Acs Synthetic Biology. PMID 33819020 DOI: 10.1021/acssynbio.1c00006   
2021 O'Connor NJ, Bordoy AE, Chatterjee A. Engineering Transcriptional Interference through RNA Polymerase Processivity Control. Acs Synthetic Biology. PMID 33710852 DOI: 10.1021/acssynbio.0c00534   
2021 Wang J. Integrative analyses of transcriptome data reveal the mechanisms of post-transcriptional regulation. Briefings in Functional Genomics. PMID 33615339 DOI: 10.1093/bfgp/elab004   
2021 Kimberlin A, Holtsclaw RE, Koo AJ. Differential Regulation of the Ribosomal Association of mRNA Transcripts in an Mutant Defective in Jasmonate-Dependent Wound Response. Frontiers in Plant Science. 12: 637959. PMID 33777072 DOI: 10.3389/fpls.2021.637959   
2021 Kim J, Goñi-Moreno A, de Lorenzo V. Subcellular Architecture of the Gene Expression Flow of the TOL Catabolic Plasmid of Pseudomonas putida mt-2. Mbio. 12. PMID 33622725 DOI: 10.1128/mBio.03685-20   
2021 Abdella R, Talyzina A, Chen S, Inouye CJ, Tjian R, He Y. Structure of the human Mediator-bound transcription preinitiation complex. Science (New York, N.Y.). PMID 33707221 DOI: 10.1126/science.abg3074   
2021 Kumar S, Mohapatra T. Deciphering Epitranscriptome: Modification of mRNA Bases Provides a New Perspective for Post-transcriptional Regulation of Gene Expression. Frontiers in Cell and Developmental Biology. 9: 628415. PMID 33816473 DOI: 10.3389/fcell.2021.628415   
2021 Jiang G, Zhang D, Li Z, Liang H, Deng R, Su X, Jiang Y, Duan X. Alternative splicing of MaMYB16L regulates starch degradation in banana fruit during ripening. Journal of Integrative Plant Biology. PMID 33656245 DOI: 10.1111/jipb.13088   
2021 Song P, Yang F, Jin H, Wang X. The regulation of protein translation and its implications for cancer. Signal Transduction and Targeted Therapy. 6: 68. PMID 33597534 DOI: 10.1038/s41392-020-00444-9   
2021 Chao Y, Jiang Y, Zhong M, Wei K, Hu C, Qin Y, Zuo Y, Yang L, Shen Z, Zou C. Regulatory roles and mechanisms of alternative RNA splicing in adipogenesis and human metabolic health. Cell & Bioscience. 11: 66. PMID 33795017 DOI: 10.1186/s13578-021-00581-w   
2021 Jian H, Zhang C, Qi Z, Li X, Lou Y, Kang Y, Deng W, Lv Y, Wang C, Wang W, Shang S, Hou M, Zhou H, Feng S. Alteration of mRNA 5-Methylcytosine Modification in Neurons After OGD/R and Potential Roles in Cell Stress Response and Apoptosis. Frontiers in Genetics. 12: 633681. PMID 33613646 DOI: 10.3389/fgene.2021.633681   
2021 Zhang H, Song M, Guo J, Ma J, Qiu M, Yang Z. The function of non-coding RNAs in idiopathic pulmonary fibrosis. Open Medicine (Warsaw, Poland). 16: 481-490. PMID 33817326 DOI: 10.1515/med-2021-0231   
2021 Ji C, Bader J, Ramanathan P, Hennlein L, Meissner F, Jablonka S, Mann M, Fischer U, Sendtner M, Briese M. Interaction of 7SK with the Smn complex modulates snRNP production. Nature Communications. 12: 1278. PMID 33627647 DOI: 10.1038/s41467-021-21529-1   
2021 Rondon R, Wilson CJ. Engineering Alternate Ligand Recognition in the PurR Topology: A System of Novel Caffeine Biosensing Transcriptional Antirepressors. Acs Synthetic Biology. PMID 33689294 DOI: 10.1021/acssynbio.0c00582   
2021 Pascual-Garcia P, Capelson M. The nuclear pore complex and the genome: organizing and regulatory principles. Current Opinion in Genetics & Development. 67: 142-150. PMID 33556822 DOI: 10.1016/j.gde.2021.01.005   
2021 da Trindade NS, de Sousa Cardoso TC, Costa GG, Cruvinel GF, Masson AP, Lanfredi GP, Allegretti SM, Faça V, de Souza Gomes M, Morais ER, Cabral FJ. Schistosoma mansoni Heterochromatin Protein 1 (HP1) nuclear interactome in cercariae. Journal of Proteomics. 104170. PMID 33662613 DOI: 10.1016/j.jprot.2021.104170   
2021 Zheng M, Chen X, Cui Y, Li W, Dai H, Yue Q, Zhang H, Zheng Y, Guo X, Zhu H. TULP2, a New RNA-Binding Protein, Is Required for Mouse Spermatid Differentiation and Male Fertility. Frontiers in Cell and Developmental Biology. 9: 623738. PMID 33763418 DOI: 10.3389/fcell.2021.623738   
2021 Cieśla M, Ngoc PCT, Cordero E, Martinez ÁS, Morsing M, Muthukumar S, Beneventi G, Madej M, Munita R, Jönsson T, Lövgren K, Ebbesson A, Nodin B, Hedenfalk I, Jirström K, et al. Oncogenic translation directs spliceosome dynamics revealing an integral role for SF3A3 in breast cancer. Molecular Cell. PMID 33662273 DOI: 10.1016/j.molcel.2021.01.034   
2021 Walters TS, McIntosh DJ, Ingram SM, Tillery L, Motley ED, Arinze IJ, Misra S. SUMO-Modification of Human Nrf2 at K and K Regulates Its Nucleocytoplasmic Localization, Stability and Transcriptional Activity. Cellular Physiology and Biochemistry : International Journal of Experimental Cellular Physiology, Biochemistry, and Pharmacology. 55: 141-159. PMID 33770425 DOI: 10.33594/000000351   
2021 Wang X, Liu C, Zhang S, Yan H, Zhang L, Jiang A, Liu Y, Feng Y, Li D, Guo Y, Hu X, Lin Y, Bu P, Li D. N-methyladenosine modification of MALAT1 promotes metastasis via reshaping nuclear speckles. Developmental Cell. PMID 33609462 DOI: 10.1016/j.devcel.2021.01.015   
2021 Liu X, Andrews MV, Skinner JP, Johanson TM, Chong MMW. A comparison of alternative mRNA splicing in the CD4 and CD8 T cell lineages. Molecular Immunology. 133: 53-62. PMID 33631555 DOI: 10.1016/j.molimm.2021.02.009   
2021 Zhang D, Chen C, Wang H, Niu E, Zhao P, Fang S, Zhu G, Shang X, Guo W. Cotton Fiber Development Requires the Pentatricopeptide Repeat Protein GhIm for Splicing of Mitochondrial nad7 mRNA. Genetics. 217: 1-17. PMID 33683356 DOI: 10.1093/genetics/iyaa017   
2021 Zhao LW, Fan HY. Revisiting poly(A)-binding proteins: Multifaceted regulators during gametogenesis and early embryogenesis. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e2000335. PMID 33830517 DOI: 10.1002/bies.202000335   
2021 Melior H, Li S, Stötzel M, Maaß S, Schütz R, Azarderakhsh S, Shevkoplias A, Barth-Weber S, Baumgardt K, Ziebuhr J, Förstner KU, Chervontseva Z, Becher D, Evguenieva-Hackenberg E. Reprograming of sRNA target specificity by the leader peptide peTrpL in response to antibiotic exposure. Nucleic Acids Research. PMID 33619526 DOI: 10.1093/nar/gkab093   
2021 Melior H, Li S, Stötzel M, Maaß S, Schütz R, Azarderakhsh S, Shevkoplias A, Barth-Weber S, Baumgardt K, Ziebuhr J, Förstner KU, Chervontseva Z, Becher D, Evguenieva-Hackenberg E. Reprograming of sRNA target specificity by the leader peptide peTrpL in response to antibiotic exposure. Nucleic Acids Research. PMID 33619526 DOI: 10.1093/nar/gkab093   
2021 Ha J, Jang H, Choi N, Oh J, Min C, Pradella D, Jung DW, Williams DR, Park D, Ghigna C, Zheng X, Shen H. SRSF9 Regulates Cassette Exon Splicing of Caspase-2 by Interacting with Its Downstream Exon. Cells. 10. PMID 33808656 DOI: 10.3390/cells10030679   
2021 Biswas K, Ghosh A. First passage time in post-transcriptional regulation by multiple small RNAs. The European Physical Journal. E, Soft Matter. 44: 16. PMID 33683458 DOI: 10.1140/epje/s10189-021-00028-7   
2021 Vrbský J, Vinarský V, Perestrelo AR, De La Cruz JO, Martino F, Pompeiano A, Izzi V, Hlinomaz O, Rotrekl V, Sudol M, Pagliari S, Forte G. Evidence for discrete modes of YAP1 signaling via mRNA splice isoforms in development and diseases. Genomics. PMID 33713822 DOI: 10.1016/j.ygeno.2021.03.009   
2021 Sharma G, Boby E, Nidhi T, Jain A, Singh J, Singh A, Chattopadhyay P, Bakhshi S, Chopra A, Palanichamy JK. Diagnostic Utility of IGF2BP1 and Its Targets as Potential Biomarkers in ETV6-RUNX1 Positive B-Cell Acute Lymphoblastic Leukemia. Frontiers in Oncology. 11: 588101. PMID 33708624 DOI: 10.3389/fonc.2021.588101   
2021 Feng J, Xu X, Fan X, Yi Q, Tang L. BAF57/SMARCE1 Interacting with Splicing Factor SRSF1 Regulates Mechanical Stress-Induced Alternative Splicing of Cyclin D1. Genes. 12. PMID 33670012 DOI: 10.3390/genes12020306   
2021 Ziff OJ, Taha DM, Crerar H, Clarke BE, Chakrabarti AM, Kelly G, Neeves J, Tyzack GE, Luscombe NM, Patani R. Reactive astrocytes in ALS display diminished intron retention. Nucleic Acids Research. PMID 33684213 DOI: 10.1093/nar/gkab115   
2021 Liu N, Neuenkirchen N, Zhong M, Lin H. Genome-wide mapping of Piwi association with specific loci in Drosophila ovaries. G3 (Bethesda, Md.). 11. PMID 33609367 DOI: 10.1093/g3journal/jkaa059   
2021 Vo DK, Engler A, Stoimenovski D, Hartig R, Kaehne T, Kalinski T, Naumann M, Haybaeck J, Nass N. Interactome Mapping of eIF3A in a Colon Cancer and an Immortalized Embryonic Cell Line Using Proximity-Dependent Biotin Identification. Cancers. 13. PMID 33799492 DOI: 10.3390/cancers13061293   
2021 Hsu TY, Zhang B, L'Etoile ND, Juang BT. orthologs MUT-7/CeWRN-1 of Werner syndrome protein regulate neuronal plasticity. Elife. 10. PMID 33646120 DOI: 10.7554/eLife.62449