Marit Nilsen-Hamilton - Publications

Biochemistry, Biophysics, and Molecular Biology Iowa State University, Ames, IA, United States 
Molecular Biology

50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Anisuzzaman S, Geraskin IM, Ilgu M, Bendickson L, Kraus GA, Nilsen-Hamilton M. Ligands with poly-fluorophenyl moieties promote a local structural rearrangement in the Spinach2 and Broccoli aptamers that increases ligand affinities. Rna (New York, N.Y.). PMID 35351813 DOI: 10.1261/rna.079005.121  0.787
2021 Ozturk M, Nilsen-Hamilton M, Ilgu M. Aptamer Applications in Neuroscience. Pharmaceuticals (Basel, Switzerland). 14. PMID 34959661 DOI: 10.3390/ph14121260  0.725
2020 Yan S, Peck JM, Ilgu M, Nilsen-Hamilton M, Lamm MH. Sampling Performance of Multiple Independent Molecular Dynamics Simulations of an RNA Aptamer. Acs Omega. 5: 20187-20201. PMID 32832772 DOI: 10.1021/acsomega.0c01867  0.747
2020 Zhao W, Bendickson L, Nilsen-Hamilton M. The Lipocalin2 Gene is Regulated in Mammary Epithelial Cells by NFκB and C/EBP In Response to Mycoplasma. Scientific Reports. 10: 7641. PMID 32376831 DOI: 10.1038/S41598-020-63393-X  0.321
2019 Ilgu M, Yan S, Khounlo RM, Lamm MH, Nilsen-Hamilton M. Common Secondary and Tertiary Structural Features of Aptamer-Ligand Interaction Shared by RNA Aptamers with Different Primary Sequences. Molecules (Basel, Switzerland). 24. PMID 31835789 DOI: 10.3390/Molecules24244535  0.779
2019 Santra K, Geraskin IM, Nilsen-Hamilton M, Kraus GA, Petrich JW. Characterization of the Photophysical Behavior of DFHBI Derivatives: Fluorogenic Molecules that Illuminate the Spinach RNA Aptamer. The Journal of Physical Chemistry. B. PMID 30807171 DOI: 10.1021/Acs.Jpcb.8B11166  0.334
2018 Gosai A, Hau Yeah BS, Nilsen-Hamilton M, Shrotriya P. Label free thrombin detection in presence of high concentration of albumin using an aptamer-functionalized nanoporous membrane. Biosensors & Bioelectronics. 126: 88-95. PMID 30396022 DOI: 10.1016/J.Bios.2018.10.010  0.3
2018 Auwardt SL, Seo YJ, Ilgu M, Ray J, Feldges RR, Shubham S, Bendickson L, Levine HA, Nilsen-Hamilton M. Aptamer-enabled uptake of small molecule ligands. Scientific Reports. 8: 15712. PMID 30356136 DOI: 10.1038/S41598-018-33887-W  0.794
2018 Shubham S, Hoinka J, Banerjee S, Swanson E, Dillard JA, Lennemann NJ, Przytycka TM, Maury W, Nilsen-Hamilton M. A 2'FY-RNA Motif Defines an Aptamer for Ebolavirus Secreted Protein. Scientific Reports. 8: 12373. PMID 30120364 DOI: 10.1038/S41598-018-30590-8  0.378
2016 Sachan A, Ilgu M, Kempema AM, Kraus GA, Nilsen-Hamilton M. Specificity and ligand affinities of the cocaine aptamer; impact of structural features and physiological NaCl. Analytical Chemistry. PMID 27348073 DOI: 10.1021/Acs.Analchem.6B01633  0.74
2016 Ray J, Shin I, Ilgu M, Bendickson L, Gupta V, Kraus GA, Nilsen-Hamilton M. IMAGEtags: Quantifying mRNA Transcription in Real Time with Multiaptamer Reporters. Methods in Enzymology. 572: 193-213. PMID 27241755 DOI: 10.1016/Bs.Mie.2016.02.028  0.792
2016 Ilgu M, Nilsen-Hamilton M. Aptamers in analytics. The Analyst. 141: 1551-68. PMID 26864075 DOI: 10.1039/C5An01824B  0.769
2016 Ray J, Shin I, Ilgu M, Bendickson L, Gupta V, Kraus GA, Nilsen-Hamilton M. IMAGEtags: Quantifying mRNA Transcription in Real Time with Multiaptamer Reporters Methods in Enzymology. DOI: 10.1016/bs.mie.2016.02.028  0.805
2015 Ilgu M, Bendickson L, Ray J, Wang T, Geraskin I, Kraus GA, Nilsen-Hamilton M. Light-up and FRET aptamer reporters; evaluating their applications for imaging transcription in eukaryotic cells. Methods (San Diego, Calif.). PMID 26707205 DOI: 10.1016/J.Ymeth.2015.12.009  0.796
2015 Mitra D, Bouthcko R, Ray J, Nilsen-Hamilton M. Detecting cells in time varying intensity images in confocal microscopy for gene expression studies in living cells Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9420. DOI: 10.1117/12.2081691  0.591
2014 Seo YJ, Nilsen-Hamilton M, Levine HA. A computational study of alternate SELEX. Bulletin of Mathematical Biology. 76: 1455-521. PMID 24878869 DOI: 10.1007/S11538-014-9954-6  0.316
2014 Ilgu M, Fulton DB, Yennamalli RM, Lamm MH, Sen TZ, Nilsen-Hamilton M. An adaptable pentaloop defines a robust neomycin-B RNA aptamer with conditional ligand-bound structures. Rna (New York, N.Y.). 20: 815-24. PMID 24757168 DOI: 10.1261/Rna.041145.113  0.792
2014 Shin I, Ray J, Gupta V, Ilgu M, Beasley J, Bendickson L, Mehanovic S, Kraus GA, Nilsen-Hamilton M. Live-cell imaging of Pol II promoter activity to monitor gene expression with RNA IMAGEtag reporters. Nucleic Acids Research. 42: e90. PMID 24753407 DOI: 10.1093/Nar/Gku297  0.778
2013 Banerjee J, Nilsen-Hamilton M. Aptamers: multifunctional molecules for biomedical research. Journal of Molecular Medicine (Berlin, Germany). 91: 1333-42. PMID 24045702 DOI: 10.1007/S00109-013-1085-2  0.356
2013 Ilgu M, Wang T, Lamm MH, Nilsen-Hamilton M. Investigating the malleability of RNA aptamers. Methods (San Diego, Calif.). 63: 178-87. PMID 23535583 DOI: 10.1016/J.Ymeth.2013.03.016  0.792
2012 Zhai L, Wang T, Kang K, Zhao Y, Shrotriya P, Nilsen-Hamilton M. An RNA aptamer-based microcantilever sensor to detect the inflammatory marker, mouse lipocalin-2. Analytical Chemistry. 84: 8763-70. PMID 22946879 DOI: 10.1021/Ac3020643  0.576
2012 Song X, Thalacker FW, Nilsen-Hamilton M. Synergistic and multidimensional regulation of plasminogen activator inhibitor type 1 expression by transforming growth factor type β and epidermal growth factor. The Journal of Biological Chemistry. 287: 12520-8. PMID 22334677 DOI: 10.1074/Jbc.M111.338079  0.533
2012 Nath S, Spencer VA, Han J, Chang H, Zhang K, Fontenay GV, Anderson C, Hyman JM, Nilsen-Hamilton M, Chang YT, Parvin B. Identification of fluorescent compounds with non-specific binding property via high throughput live cell microscopy. Plos One. 7: e28802. PMID 22242152 DOI: 10.1371/Journal.Pone.0028802  0.333
2012 Levine HA, Seo YJ, Nilsen-Hamilton M. A discrete dynamical system arising in molecular biology Discrete and Continuous Dynamical Systems - Series B. 17: 2091-2151. DOI: 10.3934/Dcdsb.2012.17.2091  0.327
2011 Kang K, Sachan A, Nilsen-Hamilton M, Shrotriya P. Aptamer functionalized microcantilever sensors for cocaine detection. Langmuir : the Acs Journal of Surfaces and Colloids. 27: 14696-702. PMID 21875108 DOI: 10.1021/La202067Y  0.521
2010 Petersen LK, Determan AS, Westgate C, Bendickson L, Nilsen-Hamilton M, Narasimhan B. Lipocalin-2-loaded Amphiphilic Polyanhydride Microparticles Accelerate Cell Migration. Journal of Biomaterials Science. Polymer Edition. PMID 20615357 DOI: 10.1163/092050610X502776  0.312
2010 Seo YJ, Chen S, Nilsen-Hamilton M, Levine HA. A mathematical analysis of multiple-target SELEX. Bulletin of Mathematical Biology. 72: 1623-65. PMID 20077028 DOI: 10.1007/S11538-009-9491-X  0.31
2009 Wang T, Hoy JA, Lamm MH, Nilsen-Hamilton M. Computational and experimental analyses converge to reveal a coherent yet malleable aptamer structure that controls chemical reactivity. Journal of the American Chemical Society. 131: 14747-55. PMID 19778045 DOI: 10.1021/Ja902719Q  0.369
2007 Levine HA, Nilsen-Hamilton M. A mathematical analysis of SELEX. Computational Biology and Chemistry. 31: 11-35. PMID 17218151 DOI: 10.1016/J.Compbiolchem.2006.10.002  0.325
2005 Cong X, Nilsen-Hamilton M. Allosteric aptamers: targeted reversibly attenuated probes. Biochemistry. 44: 7945-54. PMID 15924413 DOI: 10.1021/Bi047507X  0.612
2003 Nilsen-Hamilton M, Liu Q, Ryon J, Bendickson L, Lepont P, Chang Q. Tissue involution and the acute phase response. Annals of the New York Academy of Sciences. 995: 94-108. PMID 12814942 DOI: 10.1111/J.1749-6632.2003.Tb03213.X  0.743
2002 Ryon J, Bendickson L, Nilsen-Hamilton M. High expression in involuting reproductive tissues of uterocalin/24p3, a lipocalin and acute phase protein. The Biochemical Journal. 367: 271-7. PMID 12067275 DOI: 10.1042/Bj20020026  0.36
2002 Burke DH, Ozerova ND, Nilsen-Hamilton M. Allosteric hammerhead ribozyme TRAPs. Biochemistry. 41: 6588-94. PMID 12022862 DOI: 10.1021/Bi0201522  0.391
2001 Fassett JT, Nilsen-Hamilton M. Mrp3, a mitogen-regulated protein/proliferin gene expressed in wound healing and in hair follicles. Endocrinology. 142: 2129-37. PMID 11316781 DOI: 10.1210/Endo.142.5.8132  0.678
2000 Fassett JT, Hamilton RT, Nilsen-Hamilton M. Mrp4, a new mitogen-regulated protein/proliferin gene; unique in this gene family for its expression in the adult mouse tail and ear. Endocrinology. 141: 1863-71. PMID 10803597 DOI: 10.1210/Endo.141.5.7479  0.703
1999 Fang Y, Lepont P, Fassett JT, Ford SP, Mubaidin A, Hamilton RT, Nilsen-Hamilton M. Signaling between the placenta and the uterus involving the mitogen-regulated protein/proliferins. Endocrinology. 140: 5239-49. PMID 10537154 DOI: 10.1210/Endo.140.11.7142  0.736
1999 Mohideen MAPK, Hruska-Hageman A, Nilsen-Hamilton M. A unique bFGF-responsive transcriptional element Gene. 237: 81-90. PMID 10524239 DOI: 10.1016/S0378-1119(99)00306-6  0.343
1997 Liu Q, Ryon J, Nilsen-Hamilton M. Uterocalin: A mouse acute phase protein expressed in the uterus around birth Molecular Reproduction and Development. 46: 507-514. PMID 9094098 DOI: 10.1002/(Sici)1098-2795(199704)46:4<507::Aid-Mrd9>3.0.Co;2-S  0.32
1995 Nelson JT, Rosenzweig N, Nilsen-Hamilton M. Characterization of the mitogen-regulated protein (Proliferin) receptor Endocrinology. 136: 283-288. PMID 7828542 DOI: 10.1210/Endo.136.1.7828542  0.363
1995 Chuang TH, Hamilton RT, Nilsen-Hamilton M. Cloning of the mink plasminogen activator inhibitor type-1 messenger RNA: an mRNA with a short half life. Gene. 162: 303-8. PMID 7557448 DOI: 10.1016/0378-1119(95)00261-4  0.32
1995 Liu Q, Nilsen-Hamilton M. Identification of a new acute phase protein Journal of Biological Chemistry. 270: 22565-22570. PMID 7545679 DOI: 10.1074/Jbc.270.38.22565  0.31
1992 Thalacker FW, Nilsen-Hamilton M. Opposite and independent actions of cyclic AMP and transforming growth factor β in the regulation of type 1 plasminogen activator inhibitor expression Biochemical Journal. 287: 855-862. PMID 1332686 DOI: 10.1042/Bj2870855  0.304
1991 Davis TR, Tabatabai L, Bruns K, Hamilton RT, Nilsen-Hamilton M. Basic fibroblast growth factor induces 3T3 fibroblasts to synthesize and secrete a cyclophilin-like protein and beta 2-microglobulin. Biochimica Et Biophysica Acta. 1095: 145-52. PMID 1932134 DOI: 10.1016/0167-4889(91)90077-B  0.341
1991 Nilsen-Hamilton M, Jang YJ, Delgado M, Shim JK, Bruns K, Chiang CP, Fang Y, Parfett CL, Denhardt DT, Hamilton RT. Regulation of the expression of mitogen-regulated protein (MRP; proliferin) and cathepsin L in cultured cells and in the murine placenta. Molecular and Cellular Endocrinology. 77: 115-22. PMID 1815996 DOI: 10.1016/0303-7207(91)90065-Z  0.349
1988 Nilsen-Hamilton M, Jang YJ, Alvarez-Azaustre E, Hamilton RT. Regulation of the production of a prolactin-like protein (MRP/PLF) in 3T3 cells and in the mouse placenta. Molecular and Cellular Endocrinology. 56: 179-90. PMID 3259519 DOI: 10.1016/0303-7207(88)90059-7  0.347
1987 Nilsen-Hamilton M, Hamilton RT, Alvarez-Azaustre E. Relationship between mitogen-regulated protein (MRP) and proliferin (PLF), a member of the prolactin/growth hormone family. Gene. 51: 163-70. PMID 3596242 DOI: 10.1016/0378-1119(87)90304-0  0.346
1987 Nilsen-Hamilton M, Hamilton RT. Detection of proteins induced by growth regulators. Methods in Enzymology. 147: 427-44. PMID 3312945 DOI: 10.1016/0076-6879(87)47132-2  0.332
1986 Fienup VK, Jeng MH, Hamilton RT, Nilsen-Hamilton M. Relation between the regulation of DNA synthesis and the production of two secreted glycoproteins by 12-O-tetradecanoylphorbol-13-acetate in 3T3 cells and in phorbol ester nonresponsive 3T3 variants. Journal of Cellular Physiology. 129: 151-8. PMID 3095338 DOI: 10.1002/Jcp.1041290205  0.314
1985 Parfett CL, Hamilton RT, Howell BW, Edwards DR, Nilsen-Hamilton M, Denhardt DT. Characterization of a cDNA clone encoding murine mitogen-regulated protein: regulation of mRNA levels in mortal and immortal cell lines. Molecular and Cellular Biology. 5: 3289-92. PMID 3841805 DOI: 10.1128/Mcb.5.11.3289  0.329
1985 Hamilton RT, Nilsen-Hamilton M, Adams G. Superinduction by cycloheximide of mitogen-induced secreted proteins produced by Balb/c 3T3 cells. Journal of Cellular Physiology. 123: 201-8. PMID 2579961 DOI: 10.1002/Jcp.1041230208  0.323
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