Roger P Wise - Publications

Affiliations: 
Genetics, Development and Cell Biology Iowa State University, Ames, IA, United States 
Area:
Plant Genetics, Plant Genomics, Plant-Microbe Interactions
Website:
https://www.bcb.iastate.edu/people/roger-wise

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Chapman AVE, Hunt M, Surana P, Velásquez-Zapata V, Xu W, Fuerst G, Wise RP. Disruption of barley immunity to powdery mildew by an in-frame Lys-Leu deletion in the essential protein SGT1. Genetics. 217. PMID 33724411 DOI: 10.1093/genetics/iyaa026  0.32
2019 Hunt M, Banerjee S, Surana P, Liu M, Fuerst G, Mathioni S, Meyers BC, Nettleton D, Wise RP. Correction to: small RNA discovery in the interaction between barley and the powdery mildew pathogen. Bmc Genomics. 20: 697. PMID 31484492 DOI: 10.1186/s12864-019-6012-7  0.36
2019 Hunt M, Banerjee S, Surana P, Liu M, Fuerst G, Mathioni S, Meyers BC, Nettleton D, Wise RP. Small RNA discovery in the interaction between barley and the powdery mildew pathogen. Bmc Genomics. 20: 610. PMID 31345162 DOI: 10.1186/s12864-019-5947-z  0.36
2018 Carter ME, Helm M, Chapman A, Wan E, Restrepo Sierra AM, Innes R, Bogdanove AJ, Wise RP. Convergent evolution of effector protease recognition by Arabidopsis and barley. Molecular Plant-Microbe Interactions : Mpmi. PMID 30480480 DOI: 10.1094/MPMI-07-18-0202-FI  0.32
2018 Carter ME, Bogdanove AJ, Innes R, Wise RP. A confounding effect of bacterial titer in a type III delivery-based assay of eukaryotic effector function. Molecular Plant-Microbe Interactions : Mpmi. PMID 29767549 DOI: 10.1094/MPMI-05-18-0128-LE  0.32
2017 Surana P, Xu R, Fuerst G, Chapman AV, Nettleton D, Wise RP. Inter-chromosomal Transfer of Immune Regulation During Infection of Barley with the Powdery Mildew Pathogen. G3 (Bethesda, Md.). PMID 28790145 DOI: 10.1534/g3.117.300125  0.36
2016 Lu X, Kracher B, Saur IM, Bauer S, Ellwood SR, Wise R, Yaeno T, Maekawa T, Schulze-Lefert P. Allelic barley MLA immune receptors recognize sequence-unrelated avirulence effectors of the powdery mildew pathogen. Proceedings of the National Academy of Sciences of the United States of America. PMID 27702901 DOI: 10.1073/pnas.1612947113  0.32
2016 Zuo T, Zhang J, Lithio A, Dash S, Weber DF, Wise R, Nettleton D, Peterson T. Genes and Small RNA Transcripts Exhibit Dosage-Dependent Expression Pattern in Maize Copy-Number Alterations. Genetics. PMID 27129738 DOI: 10.1534/genetics.116.188235  0.36
2015 Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, et al. Sequencing of 15,622 gene-bearing BACs clarifies the gene-dense regions of the barley genome. The Plant Journal : For Cell and Molecular Biology. PMID 26252423 DOI: 10.1111/tpj.12959  1
2015 Xu W, Meng Y, Surana P, Fuerst G, Nettleton D, Wise RP. The knottin-like Blufensin family regulates genes involved in nuclear import and the secretory pathway in barley-powdery mildew interactions. Frontiers in Plant Science. 6: 409. PMID 26089830 DOI: 10.3389/fpls.2015.00409  0.68
2015 Whigham E, Qi S, Mistry D, Surana P, Xu R, Fuerst GS, Pliego C, Bindschedler LV, Spanu P, Dickerson JA, Innes R, Nettleton D, Bogdanove AJ, Wise RP. Broadly conserved fungal effector BEC1019 suppresses host cell death and enhances pathogen virulence in powdery mildew of barley (Hordeum vulgare L.). Molecular Plant-Microbe Interactions : Mpmi. PMID 25938194 DOI: 10.1094/MPMI-02-15-0027-FI  1
2015 Xu W, Meng Y, Surana P, Fuerst G, Nettleton D, Wise RP. The knottin-like Blufensin family regulates genes involved in nuclear import and the secretory pathway in barley-powdery mildew interactions Frontiers in Plant Science. 6. DOI: 10.3389/fpls.2015.00409  1
2014 Liu J, Cheng X, Liu D, Xu W, Wise R, Shen QH. The miR9863 family regulates distinct Mla alleles in barley to attenuate NLR receptor-triggered disease resistance and cell-death signaling. Plos Genetics. 10: e1004755. PMID 25502438 DOI: 10.1371/journal.pgen.1004755  1
2014 Cernadas RA, Doyle EL, Niño-Liu DO, Wilkins KE, Bancroft T, Wang L, Schmidt CL, Caldo R, Yang B, White FF, Nettleton D, Wise RP, Bogdanove AJ. Code-assisted discovery of TAL effector targets in bacterial leaf streak of rice reveals contrast with bacterial blight and a novel susceptibility gene. Plos Pathogens. 10: e1003972. PMID 24586171 DOI: 10.1371/journal.ppat.1003972  1
2014 Xu W, Meng Y, Wise RP. Mla- and Rom1-mediated control of microRNA398 and chloroplast copper/zinc superoxide dismutase regulates cell death in response to the barley powdery mildew fungus. The New Phytologist. 201: 1396-412. PMID 24246006 DOI: 10.1111/nph.12598  1
2014 Wise R, Surana P, Fuerst G, Xu R, Mistry D, Dickerson J, Nettleton D. Flor Revisited (Again): eQTL and Mutational Analysis of NB-LRR Mediated Immunity to Powdery Mildew in Barley Journal of Integrative Agriculture. 13: 237-243. DOI: 10.1016/S2095-3119(13)60651-6  1
2013 Mascher M, Muehlbauer GJ, Rokhsar DS, Chapman J, Schmutz J, Barry K, Muñoz-Amatriaín M, Close TJ, Wise RP, Schulman AH, Himmelbach A, Mayer KF, Scholz U, Poland JA, Stein N, et al. Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). The Plant Journal : For Cell and Molecular Biology. 76: 718-27. PMID 23998490 DOI: 10.1111/tpj.12319  1
2013 Kronmiller BA, Wise RP. TEnest 2.0: computational annotation and visualization of nested transposable elements. Methods in Molecular Biology (Clifton, N.J.). 1057: 305-19. PMID 23918438 DOI: 10.1007/978-1-62703-568-2_22  1
2013 Ballini E, Lauter N, Wise R. Prospects for advancing defense to cereal rusts through genetical genomics. Frontiers in Plant Science. 4: 117. PMID 23641250 DOI: 10.3389/fpls.2013.00117  0.36
2013 Pliego C, Nowara D, Bonciani G, Gheorghe DM, Xu R, Surana P, Whigham E, Nettleton D, Bogdanove AJ, Wise RP, Schweizer P, Bindschedler LV, Spanu PD. Host-induced gene silencing in barley powdery mildew reveals a class of ribonuclease-like effectors. Molecular Plant-Microbe Interactions : Mpmi. 26: 633-42. PMID 23441578 DOI: 10.1094/MPMI-01-13-0005-R  1
2012 Mayer KF, Waugh R, Brown JW, Schulman A, Langridge P, Platzer M, Fincher GB, Muehlbauer GJ, Sato K, Close TJ, Wise RP, Stein N. A physical, genetic and functional sequence assembly of the barley genome. Nature. 491: 711-6. PMID 23075845 DOI: 10.1038/nature11543  1
2012 Meng Y, Wise RP. HvWRKY10, HvWRKY19, and HvWRKY28 regulate Mla-triggered immunity and basal defense to barley powdery mildew. Molecular Plant-Microbe Interactions : Mpmi. 25: 1492-505. PMID 22809275 DOI: 10.1094/MPMI-04-12-0082-R  0.68
2012 Moeller JR, Moscou MJ, Bancroft T, Skadsen RW, Wise RP, Whitham SA. Differential accumulation of host mRNAs on polyribosomes during obligate pathogen-plant interactions. Molecular Biosystems. 8: 2153-65. PMID 22660698 DOI: 10.1039/c2mb25014d  0.68
2012 Blake VC, Kling JG, Hayes PM, Jannink JL, Jillella SR, Lee J, Matthews DE, Chao S, Close TJ, Muehlbauer GJ, Smith KP, Wise RP, Dickerson JA. The hordeum toolbox: The barley coordinatedagricultural project genotype and phenotype resource Plant Genome. 5: 81-91. DOI: 10.3835/plantgenome2012.03.0002  1
2011 Moscou MJ, Lauter N, Steffenson B, Wise RP. Quantitative and qualitative stem rust resistance factors in barley are associated with transcriptional suppression of defense regulons. Plos Genetics. 7: e1002208. PMID 21829384 DOI: 10.1371/journal.pgen.1002208  0.68
2011 Moscou MJ, Lauter N, Caldo RA, Nettleton D, Wise RP. Quantitative and temporal definition of the Mla transcriptional regulon during barley-powdery mildew interactions. Molecular Plant-Microbe Interactions : Mpmi. 24: 694-705. PMID 21323465 DOI: 10.1094/MPMI-09-10-0211  1
2009 Zhou S, Wei F, Nguyen J, Bechner M, Potamousis K, Goldstein S, Pape L, Mehan MR, Churas C, Pasternak S, Forrest DK, Wise R, Ware D, Wing RA, Waterman MS, et al. A single molecule scaffold for the maize genome. Plos Genetics. 5: e1000711. PMID 19936062 DOI: 10.1371/journal.pgen.1000711  1
2009 Xi L, Moscou MJ, Meng Y, Xu W, Caldo RA, Shaver M, Nettleton D, Wise RP. Transcript-based cloning of RRP46, a regulator of rRNA processing and R gene-independent cell death in barley-powdery mildew interactions. The Plant Cell. 21: 3280-95. PMID 19861556 DOI: 10.1105/tpc.109.066167  1
2009 Kronmiller BA, Wise RP. Computational finishing of large sequence contigs reveals interspersed nested repeats and gene islands in the rf1-associated region of maize. Plant Physiology. 151: 483-95. PMID 19675151 DOI: 10.1104/pp.109.143370  1
2009 Schreiber AW, Sutton T, Caldo RA, Kalashyan E, Lovell B, Mayo G, Muehlbauer GJ, Druka A, Waugh R, Wise RP, Langridge P, Baumann U. Comparative transcriptomics in the Triticeae. Bmc Genomics. 10: 285. PMID 19558723 DOI: 10.1186/1471-2164-10-285  1
2009 Hu P, Meng Y, Wise RP. Functional contribution of chorismate synthase, anthranilate synthase, and chorismate mutase to penetration resistance in barley-powdery mildew interactions. Molecular Plant-Microbe Interactions : Mpmi. 22: 311-20. PMID 19245325 DOI: 10.1094/MPMI-22-3-0311  0.96
2009 Schulte D, Close TJ, Graner A, Langridge P, Matsumoto T, Muehlbauer G, Sato K, Schulman AH, Waugh R, Wise RP, Stein N. The international barley sequencing consortium--at the threshold of efficient access to the barley genome. Plant Physiology. 149: 142-7. PMID 19126706 DOI: 10.1104/pp.108.128967  1
2009 Meng Y, Moscou MJ, Wise RP. Blufensin1 negatively impacts basal defense in response to barley powdery mildew. Plant Physiology. 149: 271-85. PMID 19005086 DOI: 10.1104/pp.108.129031  1
2008 Druka A, Druka I, Centeno AG, Li H, Sun Z, Thomas WT, Bonar N, Steffenson BJ, Ullrich SE, Kleinhofs A, Wise RP, Close TJ, Potokina E, Luo Z, Wagner C, et al. Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork. Bmc Genetics. 9: 73. PMID 19017390 DOI: 10.1186/1471-2156-9-73  1
2008 Druka A, Potokina E, Luo Z, Bonar N, Druka I, Zhang L, Marshall DF, Steffenson BJ, Close TJ, Wise RP, Kleinhofs A, Williams RW, Kearsey MJ, Waugh R. Exploiting regulatory variation to identify genes underlying quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 117: 261-72. PMID 18542913 DOI: 10.1007/s00122-008-0771-x  1
2008 Hu P, Wise RP. Diversification of Lrk/Tak kinase gene clusters is associated with subfunctionalization and cultivar-specific transcript accumulation in barley. Functional & Integrative Genomics. 8: 199-209. PMID 18414912 DOI: 10.1007/s10142-008-0077-8  0.96
2008 Kronmiller BA, Wise RP. TEnest: automated chronological annotation and visualization of nested plant transposable elements. Plant Physiology. 146: 45-59. PMID 18032588 DOI: 10.1104/pp.107.110353  1
2007 Wise RP, Caldo RA, Hong L, Shen L, Cannon E, Dickerson JA. BarleyBase/PLEXdb. Methods in Molecular Biology (Clifton, N.J.). 406: 347-63. PMID 18287702  0.36
2007 Wise RP, Moscou MJ, Bogdanove AJ, Whitham SA. Transcript profiling in host-pathogen interactions. Annual Review of Phytopathology. 45: 329-69. PMID 17480183 DOI: 10.1146/annurev.phyto.45.011107.143944  1
2006 Halterman DA, Wise RP. Upstream open reading frames of the barley Mla13 powdery mildew resistance gene function co-operatively to down-regulate translation. Molecular Plant Pathology. 7: 167-76. PMID 20507437 DOI: 10.1111/j.1364-3703.2006.00329.x  0.64
2006 Kirst M, Caldo R, Casati P, Tanimoto G, Walbot V, Wise RP, Buckler ES. Genetic diversity contribution to errors in short oligonucleotide microarray analysis. Plant Biotechnology Journal. 4: 489-98. PMID 17309725 DOI: 10.1111/j.1467-7652.2006.00198.x  1
2006 Caldo RA, Nettleton D, Peng J, Wise RP. Stage-specific suppression of basal defense discriminates barley plants containing fast- and delayed-acting Mla powdery mildew resistance alleles. Molecular Plant-Microbe Interactions : Mpmi. 19: 939-47. PMID 16941898 DOI: 10.1094/MPMI-19-0939  1
2006 Druka A, Muehlbauer G, Druka I, Caldo R, Baumann U, Rostoks N, Schreiber A, Wise R, Close T, Kleinhofs A, Graner A, Schulman A, Langridge P, Sato K, Hayes P, et al. An atlas of gene expression from seed to seed through barley development. Functional & Integrative Genomics. 6: 202-11. PMID 16547597 DOI: 10.1007/s10142-006-0025-4  1
2006 Nettleton D, Hwang JTG, Caldo RA, Wise RP. Estimating the number of true null hypotheses from a histogram of p values Journal of Agricultural, Biological, and Environmental Statistics. 11: 337-356. DOI: 10.1198/108571106X129135  1
2005 Shen L, Gong J, Caldo RA, Nettleton D, Cook D, Wise RP, Dickerson JA. BarleyBase--an expression profiling database for plant genomics. Nucleic Acids Research. 33: D614-8. PMID 15608273 DOI: 10.1093/nar/gki123  0.36
2004 Caldo RA, Nettleton D, Wise RP. Interaction-dependent gene expression in Mla-specified response to barley powdery mildew. The Plant Cell. 16: 2514-28. PMID 15319481 DOI: 10.1105/tpc.104.023382  1
2004 Halterman DA, Wise RP. A single-amino acid substitution in the sixth leucine-rich repeat of barley MLA6 and MLA13 alleviates dependence on RAR1 for disease resistance signaling. The Plant Journal : For Cell and Molecular Biology. 38: 215-26. PMID 15078326 DOI: 10.1111/j.1365-313X.2004.02032.x  0.64
2004 Close TJ, Wanamaker SI, Caldo RA, Turner SM, Ashlock DA, Dickerson JA, Wing RA, Muehlbauer GJ, Kleinhofs A, Wise RP. A new resource for cereal genomics: 22K barley GeneChip comes of age. Plant Physiology. 134: 960-8. PMID 15020760 DOI: 10.1104/pp.103.034462  1
2003 Cui X, Hsia AP, Liu F, Ashlock DA, Wise RP, Schnable PS. Alternative transcription initiation sites and polyadenylation sites are recruited during Mu suppression at the rf2a locus of maize. Genetics. 163: 685-98. PMID 12618406  1
2003 Halterman DA, Wei F, Wise RP. Powdery mildew-induced Mla mRNAs are alternatively spliced and contain multiple upstream open reading frames. Plant Physiology. 131: 558-67. PMID 12586880 DOI: 10.1104/pp.014407  0.64
2002 Wei F, Wing RA, Wise RP. Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley. The Plant Cell. 14: 1903-17. PMID 12172030 DOI: 10.1105/tpc.002238  1
2002 Wise RP, Pring DR. Nuclear-mediated mitochondrial gene regulation and male fertility in higher plants: Light at the end of the tunnel? Proceedings of the National Academy of Sciences of the United States of America. 99: 10240-2. PMID 12149484 DOI: 10.1073/pnas.172388899  1
2001 Zhou F, Kurth J, Wei F, Elliott C, Valè G, Yahiaoui N, Keller B, Somerville S, Wise R, Schulze-Lefert P. Cell-autonomous expression of barley Mla1 confers race-specific resistance to the powdery mildew fungus via a Rar1-independent signaling pathway. The Plant Cell. 13: 337-50. PMID 11226189  0.64
2001 Halterman D, Zhou F, Wei F, Wise RP, Schulze-Lefert P. The MLA6 coiled-coil, NBS-LRR protein confers AvrMla6-dependent resistance specificity to Blumeria graminis f. sp. hordei in barley and wheat. The Plant Journal : For Cell and Molecular Biology. 25: 335-48. PMID 11208025  0.64
2000 Yu Y, Tomkins JP, Waugh R, Frisch DA, Kudrna D, Kleinhofs A, Brueggeman RS, Muehlbauer GJ, Wise RP, Wing RA. A bacterial artificial chromosome library for barley (Hordeum vulgare L.) and the identification of clones containing putative resistance genes Theoretical and Applied Genetics. 101: 1093-1099. DOI: 10.1007/s001220051584  1
2000 Wise RP. Disease resistance: What's brewing in Barley genomics Plant Disease. 84: 1160-1170.  1
1999 Wei F, Gobelman-Werner K, Morroll SM, Kurth J, Mao L, Wing R, Leister D, Schulze-Lefert P, Wise RP. The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 5S (1HS) of barley. Genetics. 153: 1929-48. PMID 10581297  0.64
1991 Glab N, Wise RP, Pring DR, Jacq C, Slonimski P. Expression in Saccharomyces cerevisiae of a gene associated with cytoplasmic male sterility from maize: respiratory dysfunction and uncoupling of yeast mitochondria. Molecular & General Genetics : Mgg. 223: 24-32. PMID 2259341 DOI: 10.1007/BF00315793  0.6
1988 Pring DR, Gengenbach BG, Wise RP. Recombination is associated with polymorphism of the mitochondrial genomes of maize and sorghum. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 319: 187-98. PMID 2901764 DOI: 10.1098/rstb.1988.0042  0.4
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