Geeta J. Narlikar - Publications

Biochemistry and Molecular Biology University of California, San Francisco, San Francisco, CA 
Molecular Biology, General Biology, General Biophysics

50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Armache JP, Gamarra N, Johnson SL, Leonard JD, Wu S, Narlikar GJ, Cheng Y. Cryo-EM structures of remodeler-nucleosome intermediates suggest allosteric control through the nucleosome. Elife. 8. PMID 31210637 DOI: 10.7554/eLife.46057  0.44
2019 Gebala M, Johnson SL, Narlikar GJ, Herschlag D. Ion counting demonstrates a high electrostatic field generated by the nucleosome. Elife. 8. PMID 31184587 DOI: 10.7554/eLife.44993  1
2018 Gamarra N, Johnson SL, Trnka MJ, Burlingame AL, Narlikar GJ. The nucleosomal acidic patch relieves auto-inhibition by the ISWI remodeler SNF2h. Elife. 7. PMID 29664398 DOI: 10.7554/eLife.35322  0.44
2018 Zhou CY, Johnson SL, Lee LJ, Longhurst AD, Beckwith SL, Johnson MJ, Morrison AJ, Narlikar GJ. The Yeast INO80 Complex Operates as a Tunable DNA Length-Sensitive Switch to Regulate Nucleosome Sliding. Molecular Cell. 69: 677-688.e9. PMID 29452642 DOI: 10.1016/j.molcel.2018.01.028  0.44
2016 Zhou CY, Johnson SL, Gamarra NI, Narlikar GJ. Mechanisms of ATP-Dependent Chromatin Remodeling Motors. Annual Review of Biophysics. 45: 153-181. PMID 27391925 DOI: 10.1146/annurev-biophys-051013-022819  0.44
2016 Zhou CY, Narlikar GJ. Analysis of Nucleosome Sliding by ATP-Dependent Chromatin Remodeling Enzymes Methods in Enzymology. DOI: 10.1016/bs.mie.2016.01.015  1
2015 Zhao H, Ghirlando R, Alfonso C, Arisaka F, Attali I, Bain DL, Bakhtina MM, Becker DF, Bedwell GJ, Bekdemir A, Besong TM, Birck C, Brautigam CA, Brennerman W, Byron O, ... ... Narlikar GJ, et al. A multilaboratory comparison of calibration accuracy and the performance of external references in analytical ultracentrifugation. Plos One. 10: e0126420. PMID 25997164 DOI: 10.1371/journal.pone.0126420  1
2015 Leonard JD, Narlikar GJ. A nucleotide-driven switch regulates flanking DNA length sensing by a dimeric chromatin remodeler. Molecular Cell. 57: 850-9. PMID 25684208 DOI: 10.1016/j.molcel.2015.01.008  1
2014 Canzio D, Larson A, Narlikar GJ. Mechanisms of functional promiscuity by HP1 proteins. Trends in Cell Biology. 24: 377-86. PMID 24618358 DOI: 10.1016/j.tcb.2014.01.002  1
2014 Racki LR, Naber N, Pate E, Leonard JD, Cooke R, Narlikar GJ. The histone H4 tail regulates the conformation of the ATP-binding pocket in the SNF2h chromatin remodeling enzyme. Journal of Molecular Biology. 426: 2034-44. PMID 24607692 DOI: 10.1016/j.jmb.2014.02.021  1
2013 Narlikar GJ, Sundaramoorthy R, Owen-Hughes T. Mechanisms and functions of ATP-dependent chromatin-remodeling enzymes. Cell. 154: 490-503. PMID 23911317 DOI: 10.1016/j.cell.2013.07.011  1
2013 Al-Sady B, Madhani HD, Narlikar GJ. Division of labor between the chromodomains of HP1 and Suv39 methylase enables coordination of heterochromatin spread. Molecular Cell. 51: 80-91. PMID 23849629 DOI: 10.1016/j.molcel.2013.06.013  1
2013 Shiau C, Trnka MJ, Bozicevic A, Ortiz Torres I, Al-Sady B, Burlingame AL, Narlikar GJ, Fujimori DG. Reconstitution of nucleosome demethylation and catalytic properties of a Jumonji histone demethylase. Chemistry & Biology. 20: 494-9. PMID 23601638 DOI: 10.1016/j.chembiol.2013.03.008  1
2013 Canzio D, Liao M, Naber N, Pate E, Larson A, Wu S, Marina DB, Garcia JF, Madhani HD, Cooke R, Schuck P, Cheng Y, Narlikar GJ. A conformational switch in HP1 releases auto-inhibition to drive heterochromatin assembly. Nature. 496: 377-81. PMID 23485968 DOI: 10.1038/nature12032  1
2012 Rougemaille M, Braun S, Coyle S, Dumesic PA, Garcia JF, Isaac RS, Libri D, Narlikar GJ, Madhani HD. Ers1 links HP1 to RNAi. Proceedings of the National Academy of Sciences of the United States of America. 109: 11258-63. PMID 22733737 DOI: 10.1073/pnas.1204947109  1
2012 Shahian T, Narlikar GJ. Analysis of changes in nucleosome conformation using fluorescence resonance energy transfer. Methods in Molecular Biology (Clifton, N.J.). 833: 337-49. PMID 22183603 DOI: 10.1007/978-1-61779-477-3_20  1
2011 Armache KJ, Garlick JD, Canzio D, Narlikar GJ, Kingston RE. Structural basis of silencing: Sir3 BAH domain in complex with a nucleosome at 3.0 Å resolution. Science (New York, N.Y.). 334: 977-82. PMID 22096199 DOI: 10.1126/science.1210915  1
2011 Charles GM, Chen C, Shih SC, Collins SR, Beltrao P, Zhang X, Sharma T, Tan S, Burlingame AL, Krogan NJ, Madhani HD, Narlikar GJ. Site-specific acetylation mark on an essential chromatin-remodeling complex promotes resistance to replication stress. Proceedings of the National Academy of Sciences of the United States of America. 108: 10620-5. PMID 21673141 DOI: 10.1073/pnas.1019735108  1
2011 Canzio D, Chang EY, Shankar S, Kuchenbecker KM, Simon MD, Madhani HD, Narlikar GJ, Al-Sady B. Chromodomain-mediated oligomerization of HP1 suggests a nucleosome-bridging mechanism for heterochromatin assembly. Molecular Cell. 41: 67-81. PMID 21211724 DOI: 10.1016/j.molcel.2010.12.016  0.64
2010 Rowe CE, Narlikar GJ. The ATP-dependent remodeler RSC transfers histone dimers and octamers through the rapid formation of an unstable encounter intermediate. Biochemistry. 49: 9882-90. PMID 20853842 DOI: 10.1021/bi101491u  1
2010 Narlikar GJ. A proposal for kinetic proof reading by ISWI family chromatin remodeling motors. Current Opinion in Chemical Biology. 14: 660-5. PMID 20833099 DOI: 10.1016/j.cbpa.2010.08.001  1
2009 Blosser TR, Yang JG, Stone MD, Narlikar GJ, Zhuang X. Dynamics of nucleosome remodelling by individual ACF complexes Nature. 462: 1022-1027. PMID 20033040 DOI: 10.1038/nature08627  1
2009 Racki LR, Yang JG, Naber N, Partensky PD, Acevedo A, Purcell TJ, Cooke R, Cheng Y, Narlikar GJ. The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes. Nature. 462: 1016-21. PMID 20033039 DOI: 10.1038/nature08621  1
2009 Partensky PD, Narlikar GJ. Chromatin remodelers act globally, sequence positions nucleosomes locally. Journal of Molecular Biology. 391: 12-25. PMID 19450608 DOI: 10.1016/j.jmb.2009.04.085  1
2008 Chang EY, Ferreira H, Somers J, Nusinow DA, Owen-Hughes T, Narlikar GJ. MacroH2A allows ATP-dependent chromatin remodeling by SWI/SNF and ACF complexes but specifically reduces recruitment of SWI/SNF. Biochemistry. 47: 13726-32. PMID 19035833 DOI: 10.1021/bi8016944  1
2008 Madhani HD, Francis NJ, Kingston RE, Kornberg RD, Moazed D, Narlikar GJ, Panning B, Struhl K. Epigenomics: a roadmap, but to where? Science (New York, N.Y.). 322: 43-4. PMID 18832628 DOI: 10.1126/science.322.5898.43b  1
2008 Racki LR, Narlikar GJ. ATP-dependent chromatin remodeling enzymes: two heads are not better, just different. Current Opinion in Genetics & Development. 18: 137-44. PMID 18339542 DOI: 10.1016/j.gde.2008.01.007  1
2007 Simon MD, Chu F, Racki LR, de la Cruz CC, Burlingame AL, Panning B, Narlikar GJ, Shokat KM. The site-specific installation of methyl-lysine analogs into recombinant histones. Cell. 128: 1003-12. PMID 17350582 DOI: 10.1016/j.cell.2006.12.041  1
2007 Yang JG, Narlikar GJ. FRET-based methods to study ATP-dependent changes in chromatin structure. Methods (San Diego, Calif.). 41: 291-5. PMID 17309839 DOI: 10.1016/j.ymeth.2006.08.015  1
2006 Yang JG, Madrid TS, Sevastopoulos E, Narlikar GJ. The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing. Nature Structural & Molecular Biology. 13: 1078-83. PMID 17099699 DOI: 10.1038/nsmb1170  1
2006 He X, Fan HY, Narlikar GJ, Kingston RE. Human ACF1 alters the remodeling strategy of SNF2h. The Journal of Biological Chemistry. 281: 28636-47. PMID 16877760 DOI: 10.1074/jbc.M603008200  1
2005 Mahajan MC, Narlikar GJ, Boyapaty G, Kingston RE, Weissman SM. Heterogeneous nuclear ribonucleoprotein C1/C2, MeCP1, and SWI/SNF form a chromatin remodeling complex at the beta-globin locus control region. Proceedings of the National Academy of Sciences of the United States of America. 102: 15012-7. PMID 16217013 DOI: 10.1073/pnas.0507596102  1
2004 Fan HY, Narlikar GJ, Kingston RE. Noncovalent modification of chromatin: different remodeled products with different ATPase domains. Cold Spring Harbor Symposia On Quantitative Biology. 69: 183-92. PMID 16117648 DOI: 10.1101/sqb.2004.69.183  1
2003 Fan HY, He X, Kingston RE, Narlikar GJ. Distinct strategies to make nucleosomal DNA accessible. Molecular Cell. 11: 1311-22. PMID 12769854 DOI: 10.1016/S1097-2765(03)00192-8  1
2002 Narlikar GJ, Fan HY, Kingston RE. Cooperation between complexes that regulate chromatin structure and transcription. Cell. 108: 475-87. PMID 11909519 DOI: 10.1016/S0092-8674(02)00654-2  1
2001 Narlikar GJ, Phelan ML, Kingston RE. Generation and interconversion of multiple distinct nucleosomal states as a mechanism for catalyzing chromatin fluidity. Molecular Cell. 8: 1219-30. PMID 11779498 DOI: 10.1016/S1097-2765(01)00412-9  1
2001 Aalfs JD, Narlikar GJ, Kingston RE. Functional differences between the human ATP-dependent nucleosome remodeling proteins BRG1 and SNF2H. The Journal of Biological Chemistry. 276: 34270-8. PMID 11435432 DOI: 10.1074/jbc.M104163200  1
2001 Jónsson ZO, Dhar SK, Narlikar GJ, Auty R, Wagle N, Pellman D, Pratt RE, Kingston R, Dutta A. Rvb1p and Rvb2p are essential components of a chromatin remodeling complex that regulates transcription of over 5% of yeast genes. The Journal of Biological Chemistry. 276: 16279-88. PMID 11278922 DOI: 10.1074/jbc.M011523200  1
2001 Guyon JR, Narlikar GJ, Sullivan EK, Kingston RE. Stability of a human SWI-SNF remodeled nucleosomal array. Molecular and Cellular Biology. 21: 1132-44. PMID 11158300 DOI: 10.1128/MCB.21.4.1132-1144.2001  1
2000 Narlikar GJ, Bartley LE, Herschlag D. Use of duplex rigidity for stability and specificity in RNA tertiary structure. Biochemistry. 39: 6183-9. PMID 10821693 DOI: 10.1021/bi992858a  1
1999 Narlikar GJ, Bartley LE, Khosla M, Herschlag D. Characterization of a local folding event of the Tetrahymena group I ribozyme: effects of oligonucleotide substrate length, pH, and temperature on the two substrate binding steps. Biochemistry. 38: 14192-204. PMID 10571993 DOI: 10.1021/bi9914309  1
1999 Kingston RE, Narlikar GJ. ATP-dependent remodeling and acetylation as regulators of chromatin fluidity. Genes & Development. 13: 2339-52. PMID 10500090 DOI: 10.1101/gad.13.18.2339  1
1999 Shan SO, Narlikar GJ, Herschlag D. Protonated 2'-aminoguanosine as a probe of the electrostatic environment of the active site of the Tetrahymena group I ribozyme. Biochemistry. 38: 10976-88. PMID 10460152 DOI: 10.1021/bi9903897  1
1999 Phelan ML, Sif S, Narlikar GJ, Kingston RE. Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits. Molecular Cell. 3: 247-53. PMID 10078207 DOI: 10.1016/S1097-2765(00)80315-9  1
1999 Guyon JR, Narlikar GJ, Sif S, Kingston RE. Stable remodeling of tailless nucleosomes by the human SWI-SNF complex. Molecular and Cellular Biology. 19: 2088-97. PMID 10022896  1
1998 Narlikar GJ, Herschlag D. Direct demonstration of the catalytic role of binding interactions in an enzymatic reaction Biochemistry. 37: 9902-9911. PMID 9665695 DOI: 10.1021/bi980495t  1
1997 Narlikar GJ, Herschlag D. Mechanistic aspects of enzymatic catalysis: Lessons from comparison of RNA and protein enzymes Annual Review of Biochemistry. 66: 19-59. PMID 9242901 DOI: 10.1146/annurev.biochem.66.1.19  1
1997 Narlikar GJ, Khosla M, Usman N, Herschlag D. Quantitating tertiary binding energies of 2' OH groups on the P1 duplex of the Tetrahymena ribozyme: Intrinsic binding energy in an RNA enzyme Biochemistry. 36: 2465-2477. PMID 9054551 DOI: 10.1021/bi9610820  1
1996 Narlikar GJ, Herschlag D. Isolation of a local tertiary folding transition in the context of a globally folded RNA Nature Structural Biology. 3: 701-710. PMID 8756329 DOI: 10.1038/nsb0896-701  1
1995 Narlikar GJ, Gopalakrishnan V, McConnell TS, Usman N, Herschlag D. Use of binding energy by an RNA enzyme for catalysis by positioning and substrate destabilization Proceedings of the National Academy of Sciences of the United States of America. 92: 3668-3672. PMID 7731962  1
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