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Paula S. Ramos, Ph.D. - Publications

Affiliations: 
2007 University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
Immunology, Genetics
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Marion MC, Ramos PS, Bachali P, Labonte AC, Zimmerman KD, Ainsworth HC, Heuer SE, Robl RD, Catalina MD, Kelly JA, Howard TD, Lipsky PE, Grammer AC, Langefeld CD. Nucleic Acid-Sensing and Interferon-Inducible Pathways Show Differential Methylation in MZ Twins Discordant for Lupus and Overexpression in Independent Lupus Samples: Implications for Pathogenic Mechanism and Drug Targeting. Genes. 12. PMID 34946847 DOI: 10.3390/genes12121898  0.335
2021 Khatiwada A, Wolf BJ, Yilmaz AS, Ramos PS, Pietrzak M, Lawson A, Hunt KJ, Kim HJ, Chung D. GPA-Tree: Statistical Approach for Functional-Annotation-Tree-Guided Prioritization of GWAS Results. Bioinformatics (Oxford, England). PMID 34849578 DOI: 10.1093/bioinformatics/btab802  0.398
2019 Ramos PS. Epigenetics of scleroderma: Integrating genetic, ethnic, age, and environmental effects. Journal of Scleroderma and Related Disorders. 4: 238-250. PMID 35382507 DOI: 10.1177/2397198319855872  0.374
2019 Ramos PS. Epigenetics of scleroderma: Integrating genetic, ethnic, age, and environmental effects. Journal of Scleroderma and Related Disorders. 4: 238-250. PMID 35382507 DOI: 10.1177/2397198319855872  0.374
2019 Gourh P, Safran SA, Alexander T, Boyden SE, Morgan ND, Shah AA, Mayes MD, Doumatey A, Bentley AR, Shriner D, Domsic RT, Medsger TA, Ramos PS, Silver RM, Steen VD, et al. and autoantibodies define scleroderma subtypes and risk in African and European Americans and suggest a role for molecular mimicry. Proceedings of the National Academy of Sciences of the United States of America. PMID 31871193 DOI: 10.1073/Pnas.1906593116  0.55
2019 Couch D, Yu Z, Nam JH, Allen C, Ramos PS, da Silveira WA, Hunt KJ, Hazard ES, Hardiman G, Lawson A, Chung D. GAIL: An interactive webserver for inference and dynamic visualization of gene-gene associations based on gene ontology guided mining of biomedical literature. Plos One. 14: e0219195. PMID 31260503 DOI: 10.1371/Journal.Pone.0219195  0.361
2019 Ramos PS, Zimmerman KD, Haddad S, Langefeld CD, Medsger TA, Feghali-Bostwick CA. Integrative analysis of DNA methylation in discordant twins unveils distinct architectures of systemic sclerosis subsets. Clinical Epigenetics. 11: 58. PMID 30947741 DOI: 10.1186/S13148-019-0652-Y  0.441
2018 Wolf BJ, Ramos PS, Hyer JM, Ramakrishnan V, Gilkeson GS, Hardiman G, Nietert PJ, Kamen DL. An Analytic Approach Using Candidate Gene Selection and Logic Forest to Identify Gene by Environment Interactions (G × E) for Systemic Lupus Erythematosus in African Americans. Genes. 9. PMID 30326636 DOI: 10.3390/Genes9100496  0.483
2018 Gourh P, Remmers EF, Boyden SE, Alexander T, Morgan ND, Shah AA, Mayes MD, Doumatey A, Bentley AR, Shriner D, Domsic RT, Medsger TA, Steen VD, Ramos PS, Silver RM, et al. Whole-Exome Sequencing to Identify Rare Variants and Gene Networks that Increase Susceptibility to Scleroderma in African Americans. Arthritis & Rheumatology (Hoboken, N.J.). PMID 29732714 DOI: 10.1002/Art.40541  0.427
2018 Kortemeier E, Ramos PS, Hunt KJ, Kim HJ, Hardiman G, Chung D. ShinyGPA: An interactive visualization toolkit for investigating pleiotropic architecture using GWAS datasets. Plos One. 13: e0190949. PMID 29309429 DOI: 10.1371/Journal.Pone.0190949  0.378
2017 Morgan ND, Shah AA, Mayes MD, Domsic RT, Medsger TA, Steen VD, Varga J, Carns M, Ramos PS, Silver RM, Schiopu E, Khanna D, Hsu V, Gordon JK, Gladue H, et al. Clinical and serological features of systemic sclerosis in a multicenter African American cohort: Analysis of the genome research in African American scleroderma patients clinical database. Medicine. 96: e8980. PMID 29390428 DOI: 10.1097/Md.0000000000008980  0.348
2017 Wheeler E, Leong A, Liu CT, Hivert MF, Strawbridge RJ, Podmore C, Li M, Yao J, Sim X, Hong J, Chu AY, Zhang W, Wang X, Chen P, Maruthur NM, ... ... Ramos PS, et al. Impact of common genetic determinants of Hemoglobin A1c on type 2 diabetes risk and diagnosis in ancestrally diverse populations: A transethnic genome-wide meta-analysis. Plos Medicine. 14: e1002383. PMID 28898252 DOI: 10.1371/Journal.Pmed.1002383  0.454
2017 Langefeld CD, Ainsworth HC, Graham DSC, Kelly JA, Comeau ME, Marion MC, Howard TD, Ramos PS, Croker JA, Morris DL, Sandling JK, Almlöf JC, Acevedo-Vásquez EM, Alarcón GS, Babini AM, et al. Transancestral mapping and genetic load in systemic lupus erythematosus. Nature Communications. 8: 16021. PMID 28714469 DOI: 10.1038/Ncomms16021  0.613
2017 Ramos PS. Population Genetics and Natural Selection in Rheumatic Disease. Rheumatic Diseases Clinics of North America. 43: 313-326. PMID 28711136 DOI: 10.1016/J.Rdc.2017.04.001  0.453
2016 Wei W, Ramos PS, Hunt KJ, Wolf BJ, Hardiman G, Chung D. GPA-MDS: A Visualization Approach to Investigate Genetic Architecture among Phenotypes Using GWAS Results. International Journal of Genomics. 2016: 6589843. PMID 27868058 DOI: 10.1155/2016/6589843  0.48
2015 Ramos PS, Silver RM, Feghali-Bostwick CA. Genetics of systemic sclerosis: recent advances. Current Opinion in Rheumatology. 27: 521-9. PMID 26317679 DOI: 10.1097/Bor.0000000000000214  0.564
2015 Ramos PS, Shedlock AM, Langefeld CD. Genetics of autoimmune diseases: insights from population genetics. Journal of Human Genetics. 60: 657-64. PMID 26223182 DOI: 10.1038/Jhg.2015.94  0.46
2014 Chung SA, Brown EE, Williams AH, Ramos PS, Berthier CC, Bhangale T, Alarcon-Riquelme ME, Behrens TW, Criswell LA, Graham DC, Demirci FY, Edberg JC, Gaffney PM, Harley JB, Jacob CO, et al. Lupus nephritis susceptibility loci in women with systemic lupus erythematosus. Journal of the American Society of Nephrology : Jasn. 25: 2859-70. PMID 24925725 DOI: 10.1681/Asn.2013050446  0.542
2014 Ramos PS, Shaftman SR, Ward RC, Langefeld CD. Genes associated with SLE are targets of recent positive selection. Autoimmune Diseases. 2014: 203435. PMID 24587899 DOI: 10.1155/2014/203435  0.526
2013 Ramos PS, Oates JC, Kamen DL, Williams AH, Gaffney PM, Kelly JA, Kaufman KM, Kimberly RP, Niewold TB, Jacob CO, Tsao BP, Alarcón GS, Brown EE, Edberg JC, Petri MA, et al. Variable association of reactive intermediate genes with systemic lupus erythematosus in populations with different African ancestry. The Journal of Rheumatology. 40: 842-9. PMID 23637325 DOI: 10.3899/Jrheum.120989  0.72
2013 Ramos PS, Oates JC, Kamen DL, Williams AH, Gaffney PM, Kelly JA. Erratum: Variable association of reactive intermediate genes with systemic lupus erythematosus in populations with different african ancestry (Journal of Rheumatology (2013) 40 (842-849)) The Journal of Rheumatology. 40. DOI: 10.3899/Jrheum.120989.C1  0.47
2012 Ramos PS, Marion MC, Langefeld CD, Buyon JP, Clancy RM. Brief report: enrichment of associations in genes with fibrosis, apoptosis, and innate immunity functions with cardiac manifestations of neonatal lupus. Arthritis and Rheumatism. 64: 4060-5. PMID 22886516 DOI: 10.1002/Art.34663  0.504
2012 Ramos PS, Sajuthi S, Langefeld CD, Walker SJ. Immune function genes CD99L2, JARID2 and TPO show association with autism spectrum disorder. Molecular Autism. 3: 4. PMID 22681640 DOI: 10.1186/2040-2392-3-4  0.484
2012 Lessard CJ, Adrianto I, Ice JA, Wiley GB, Kelly JA, Glenn SB, Adler AJ, Li H, Rasmussen A, Williams AH, Ziegler J, Comeau ME, Marion M, Wakeland BE, Liang C, ... Ramos PS, et al. Identification of IRF8, TMEM39A, and IKZF3-ZPBP2 as susceptibility loci for systemic lupus erythematosus in a large-scale multiracial replication study. American Journal of Human Genetics. 90: 648-60. PMID 22464253 DOI: 10.1016/J.Ajhg.2012.02.023  0.731
2012 Thompson SD, Marion MC, Sudman M, Ryan M, Tsoras M, Howard TD, Barnes MG, Ramos PS, Thomson W, Hinks A, Haas JP, Prahalad S, Bohnsack JF, Wise CA, Punaro M, et al. Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13. Arthritis and Rheumatism. 64: 2781-91. PMID 22354554 DOI: 10.1002/Art.34429  0.542
2012 Saxena A, McDonnell E, Ramos PS, Sajuthi S, Marion MC, Langefeld CD, Buyon JP, Clancy RM. Preferential transmission of genetic risk variants of candidate loci at 6p21 from asymptomatic grandparents to mothers of children with neonatal lupus. Arthritis and Rheumatism. 64: 931-9. PMID 22031281 DOI: 10.1002/Art.33366  0.418
2011 Ramos PS, Criswell LA, Moser KL, Comeau ME, Williams AH, Pajewski NM, Chung SA, Graham RR, Zidovetzki R, Kelly JA, Kaufman KM, Jacob CO, Vyse TJ, Tsao BP, Kimberly RP, et al. A comprehensive analysis of shared loci between systemic lupus erythematosus (SLE) and sixteen autoimmune diseases reveals limited genetic overlap. Plos Genetics. 7: e1002406. PMID 22174698 DOI: 10.1371/Journal.Pgen.1002406  0.727
2011 Ramos PS, Williams AH, Ziegler JT, Comeau ME, Guy RT, Lessard CJ, Li H, Edberg JC, Zidovetzki R, Criswell LA, Gaffney PM, Graham DC, Graham RR, Kelly JA, Kaufman KM, et al. Genetic analyses of interferon pathway-related genes reveal multiple new loci associated with systemic lupus erythematosus. Arthritis and Rheumatism. 63: 2049-57. PMID 21437871 DOI: 10.1002/Art.30356  0.717
2010 Thompson SD, Sudman M, Ramos PS, Marion MC, Ryan M, Tsoras M, Weiler T, Wagner M, Keddache M, Haas JP, Mueller C, Prahalad S, Bohnsack J, Wise CA, Punaro M, et al. The susceptibility loci juvenile idiopathic arthritis shares with other autoimmune diseases extend to PTPN2, COG6, and ANGPT1. Arthritis and Rheumatism. 62: 3265-76. PMID 20722033 DOI: 10.1002/Art.27688  0.546
2010 Clancy RM, Marion MC, Kaufman KM, Ramos PS, Adler A, Harley JB, Langefeld CD, Buyon JP. Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus. Arthritis and Rheumatism. 62: 3415-24. PMID 20662065 DOI: 10.1002/Art.27658  0.556
2010 Ramos PS, Brown EE, Kimberly RP, Langefeld CD. Genetic factors predisposing to systemic lupus erythematosus and lupus nephritis. Seminars in Nephrology. 30: 164-76. PMID 20347645 DOI: 10.1016/J.Semnephrol.2010.01.007  0.566
2009 Ramos PS, Langefeld CD, Bera LA, Gaffney PM, Noble JA, Moser KL. Variation in the ATP-binding cassette transporter 2 gene is a separate risk factor for systemic lupus erythematosus within the MHC. Genes and Immunity. 10: 350-5. PMID 19387463 DOI: 10.1038/Gene.2009.21  0.723
2006 Ramos PS, Kelly JA, Gray-McGuire C, Bruner GR, Leiran AN, Meyer CM, Namjou B, Espe KJ, Ortmann WA, Reichlin M, Langefeld CD, James JA, Gaffney PM, Behrens TW, Harley JB, et al. Familial aggregation and linkage analysis of autoantibody traits in pedigrees multiplex for systemic lupus erythematosus. Genes and Immunity. 7: 417-32. PMID 16775618 DOI: 10.1038/Sj.Gene.6364316  0.587
2005 Behrens TW, Graham RR, Kyogoku C, Baechler EC, Ramos PS, Gillett C, Bauer J, Ortmann WA, Hippen KL, Peterson E, Langefeld CD, Moser KL, Gaffney PM, Gregersen PK. Progress towards understanding the genetic pathogenesis of systemic lupus erythematosus. Novartis Foundation Symposium. 267: 145-60; discussion 1. PMID 15999805 DOI: 10.1002/047002139X.Ch10  0.659
2004 Kyogoku C, Langefeld CD, Ortmann WA, Lee A, Selby S, Carlton VE, Chang M, Ramos P, Baechler EC, Batliwalla FM, Novitzke J, Williams AH, Gillett C, Rodine P, Graham RR, et al. Genetic association of the R620W polymorphism of protein tyrosine phosphatase PTPN22 with human SLE. American Journal of Human Genetics. 75: 504-7. PMID 15273934 DOI: 10.1086/423790  0.657
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