Year |
Citation |
Score |
2023 |
Pulecio J, Tayyebi Z, Liu D, Wong W, Luo R, Damodaran JR, Kaplan S, Cho H, Yan J, Murphy D, Rickert RW, Shukla A, Zhong A, González F, Yang D, et al. Discovery of Competent Chromatin Regions in Human Embryonic Stem Cells. Biorxiv : the Preprint Server For Biology. PMID 37398096 DOI: 10.1101/2023.06.14.544990 |
0.452 |
|
2017 |
Verma N, Pan H, Doré LC, Shukla A, Li QV, Pelham-Webb B, Teijeiro V, González F, Krivtsov A, Chang CJ, Papapetrou EP, He C, Elemento O, Huangfu D. TET proteins safeguard bivalent promoters from de novo methylation in human embryonic stem cells. Nature Genetics. PMID 29203910 DOI: 10.1038/S41588-017-0002-Y |
0.384 |
|
2014 |
Durairaj G, Sen R, Uprety B, Shukla A, Bhaumik SR. Sus1p facilitates pre-initiation complex formation at the SAGA-regulated genes independently of histone H2B de-ubiquitylation. Journal of Molecular Biology. 426: 2928-41. PMID 24911582 DOI: 10.1016/J.Jmb.2014.05.028 |
0.842 |
|
2012 |
Shukla A, Lahudkar S, Durairaj G, Bhaumik SR. Sgf29p facilitates the recruitment of TATA box binding protein but does not alter SAGA's global structural integrity in vivo. Biochemistry. 51: 706-14. PMID 22224423 DOI: 10.1021/Bi201708Z |
0.766 |
|
2011 |
Jiang H, Shukla A, Wang X, Chen WY, Bernstein BE, Roeder RG. Role for Dpy-30 in ES cell-fate specification by regulation of H3K4 methylation within bivalent domains. Cell. 144: 513-25. PMID 21335234 DOI: 10.1016/J.Cell.2011.01.020 |
0.415 |
|
2011 |
Lahudkar S, Shukla A, Bajwa P, Durairaj G, Stanojevic N, Bhaumik SR. The mRNA cap-binding complex stimulates the formation of pre-initiation complex at the promoter via its interaction with Mot1p in vivo. Nucleic Acids Research. 39: 2188-209. PMID 21075799 DOI: 10.1093/Nar/Gkq1029 |
0.761 |
|
2010 |
Durairaj G, Chaurasia P, Lahudkar S, Malik S, Shukla A, Bhaumik SR. Regulation of chromatin assembly/disassembly by Rtt109p, a histone H3 Lys56-specific acetyltransferase, in vivo. The Journal of Biological Chemistry. 285: 30472-9. PMID 20668333 DOI: 10.1074/Jbc.M110.113225 |
0.739 |
|
2010 |
Malik S, Chaurasia P, Lahudkar S, Durairaj G, Shukla A, Bhaumik SR. Rad26p, a transcription-coupled repair factor, is recruited to the site of DNA lesion in an elongating RNA polymerase II-dependent manner in vivo. Nucleic Acids Research. 38: 1461-77. PMID 20007604 DOI: 10.1093/Nar/Gkp1147 |
0.706 |
|
2009 |
Malik S, Shukla A, Sen P, Bhaumik SR. The 19 s proteasome subcomplex establishes a specific protein interaction network at the promoter for stimulated transcriptional initiation in vivo. The Journal of Biological Chemistry. 284: 35714-24. PMID 19843524 DOI: 10.1074/Jbc.M109.035709 |
0.798 |
|
2009 |
Shukla A, Durairaj G, Schneider J, Duan Z, Shadle T, Bhaumik SR. Stimulation of mRNA export by an F-box protein, Mdm30p, in vivo. Journal of Molecular Biology. 389: 238-47. PMID 19376128 DOI: 10.1016/J.Jmb.2009.04.018 |
0.783 |
|
2009 |
Shukla A, Chaurasia P, Bhaumik SR. Histone methylation and ubiquitination with their cross-talk and roles in gene expression and stability. Cellular and Molecular Life Sciences : Cmls. 66: 1419-33. PMID 19370393 DOI: 10.1007/S00018-008-8605-1 |
0.728 |
|
2009 |
Shukla A, Natarajan A, Bhaumik S, El-Shemy HA, Lightfoot D. The interactions of the largest subunit of RNA polymerase II with other cellular proteins: a bioinformatic approach. Current Issues in Molecular Biology. 11: i65-71. PMID 19193966 |
0.591 |
|
2007 |
Lee JS, Shukla A, Schneider J, Swanson SK, Washburn MP, Florens L, Bhaumik SR, Shilatifard A. Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS. Cell. 131: 1084-96. PMID 18083099 DOI: 10.1016/J.Cell.2007.09.046 |
0.743 |
|
2007 |
Shukla A, Bhaumik SR. H2B-K123 ubiquitination stimulates RNAPII elongation independent of H3-K4 methylation. Biochemical and Biophysical Research Communications. 359: 214-20. PMID 17543890 DOI: 10.1016/J.Bbrc.2007.05.105 |
0.735 |
|
2007 |
Wood A, Shukla A, Schneider J, Lee JS, Stanton JD, Dzuiba T, Swanson SK, Florens L, Washburn MP, Wyrick J, Bhaumik SR, Shilatifard A. Ctk complex-mediated regulation of histone methylation by COMPASS. Molecular and Cellular Biology. 27: 709-20. PMID 17088385 DOI: 10.1128/Mcb.01627-06 |
0.753 |
|
2006 |
Shukla A, Bajwa P, Bhaumik SR. SAGA-associated Sgf73p facilitates formation of the preinitiation complex assembly at the promoters either in a HAT-dependent or independent manner in vivo. Nucleic Acids Research. 34: 6225-32. PMID 17090597 DOI: 10.1093/Nar/Gkl844 |
0.787 |
|
2006 |
Shukla A, Stanojevic N, Duan Z, Shadle T, Bhaumik SR. Functional analysis of H2B-Lys-123 ubiquitination in regulation of H3-Lys-4 methylation and recruitment of RNA polymerase II at the coding sequences of several active genes in vivo. The Journal of Biological Chemistry. 281: 19045-54. PMID 16675445 DOI: 10.1074/Jbc.M513533200 |
0.763 |
|
2006 |
Shukla A, Stanojevic N, Duan Z, Sen P, Bhaumik SR. Ubp8p, a histone deubiquitinase whose association with SAGA is mediated by Sgf11p, differentially regulates lysine 4 methylation of histone H3 in vivo. Molecular and Cellular Biology. 26: 3339-52. PMID 16611979 DOI: 10.1128/Mcb.26.9.3339-3352.2006 |
0.729 |
|
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