Ross R. Cocklin, Ph.D. - Publications

2009 Biochemistry and Molecular Biology Indiana University, Bloomington, Bloomington, IN, United States 
Molecular Biology, Biochemistry, Genetics

21/23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 McKinlay A, Podicheti R, Wendte JM, Cocklin R, Rusch DB. RNA polymerases IV and V influence the 3' boundaries of Polymerase II transcription units in Arabidopsis. Rna Biology. 1-11. PMID 29199514 DOI: 10.1080/15476286.2017.1409930  0.36
2014 Blevins T, Pontvianne F, Cocklin R, Podicheti R, Chandrasekhara C, Yerneni S, Braun C, Lee B, Rusch D, Mockaitis K, Tang H, Pikaard CS. A two-step process for epigenetic inheritance in Arabidopsis. Molecular Cell. 54: 30-42. PMID 24657166 DOI: 10.1016/J.Molcel.2014.02.019  0.92
2013 Adler JJ, Heller BL, Bringman LR, Ranahan WP, Cocklin RR, Goebl MG, Oh M, Lim HS, Ingham RJ, Wells CD. Amot130 adapts atrophin-1 interacting protein 4 to inhibit yes-associated protein signaling and cell growth. The Journal of Biological Chemistry. 288: 15181-93. PMID 23564455 DOI: 10.1074/Jbc.M112.446534  0.92
2012 Pikaard CS, Haag JR, Pontes OM, Blevins T, Cocklin R. A transcription fork model for Pol IV and Pol V-dependent RNA-directed DNA methylation. Cold Spring Harbor Symposia On Quantitative Biology. 77: 205-12. PMID 23567894 DOI: 10.1101/Sqb.2013.77.014803  0.92
2012 Wierzbicki AT, Cocklin R, Mayampurath A, Lister R, Jordan Rowley M, Gregory BD, Ecker JR, Tang H, Pikaard CS. Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome Genes and Development. 26: 1825-1836. PMID 22855789 DOI: 10.1101/Gad.197772.112  0.92
2011 Cocklin R, Goebl M. Nutrient sensing kinases PKA and sch9 phosphorylate the catalytic domain of the ubiquitin-conjugating enzyme Cdc34 Plos One. 6. PMID 22087249 DOI: 10.1371/Journal.Pone.0027099  0.92
2011 Lass A, Cocklin R, Scaglione KM, Skowyra M, Korolev S, Goebl M, Skowyra D. The loop-less tmCdc34 E2 mutant defective in polyubiquitination in vitro and in vivo supports yeast growth in a manner dependent on Ubp14 and Cka2. Cell Division. 6: 7. PMID 21453497 DOI: 10.1186/1747-1028-6-7  0.92
2011 Cocklin R, Heyen J, Larry T, Tyers M, Goebl M. New insight into the role of the Cdc34 ubiquitin-conjugating enzyme in cell cycle regulation via Ace2 and Sic1 Genetics. 187: 701-715. PMID 21196523 DOI: 10.1534/Genetics.110.125302  0.92
2011 Lin L, Wagner MC, Cocklin R, Kuzma A, Harrington M, Molitoris BA, Goebl MG. The antibiotic gentamicin inhibits specific protein trafficking functions of the Arf1/2 family of GTPases. Antimicrobial Agents and Chemotherapy. 55: 246-54. PMID 20956596 DOI: 10.1128/Aac.00450-10  0.92
2010 Radivojac P, Vacic V, Haynes C, Cocklin RR, Mohan A, Heyen JW, Goebl MG, Iakoucheva LM. Identification, analysis, and prediction of protein ubiquitination sites. Proteins. 78: 365-80. PMID 19722269 DOI: 10.1002/Prot.22555  0.92
2007 Scaglione KM, Bansal PK, Deffenbaugh AE, Kiss A, Moore JM, Korolev S, Cocklin R, Goebl M, Kitagawa K, Skowyra D. SCF E3-mediated autoubiquitination negatively regulates activity of Cdc34 E2 but plays a nonessential role in the catalytic cycle in vitro and in vivo. Molecular and Cellular Biology. 27: 5860-70. PMID 17562869 DOI: 10.1128/Mcb.01555-06  0.92
2007 Ott LW, Resing KA, Sizemore AW, Heyen JW, Cocklin RR, Pedrick NM, Woods HC, Chen JY, Goebl MG, Witzmann FA, Harrington MA. Tumor Necrosis Factor-alpha- and interleukin-1-induced cellular responses: coupling proteomic and genomic information. Journal of Proteome Research. 6: 2176-85. PMID 17503796 DOI: 10.1021/Pr060665L  0.92
2005 Schweitzer K, Cocklin R, Garrett L, Desai F, Goebl M. The ubiquitin ligase SCFGrrl is necessary for pheromone sensitivity in Saccharomyces cerevisiae Yeast. 22: 553-564. PMID 15942932 DOI: 10.1002/Yea.1234  0.92
2004 Tao W, Wang M, Voss ED, Cocklin RR, Smith JA, Cooper SH, Broxmeyer HE. Comparative proteomic analysis of human CD34+ stem/progenitor cells and mature CD15+ myeloid cells. Stem Cells (Dayton, Ohio). 22: 1003-14. PMID 15536191 DOI: 10.1634/Stemcells.22-6-1003  0.92
2003 Decker ED, Zhang Y, Cocklin RR, Witzmann FA, Wang M. Proteomic analysis of differential protein expression induced by ultraviolet light radiation in HeLa cells. Proteomics. 3: 2019-27. PMID 14625864 DOI: 10.1002/Pmic.200300473  0.92
2003 Wang ZM, Li X, Cocklin RR, Wang M, Wang M, Fukase K, Inamura S, Kusumoto S, Gupta D, Dziarski R. Human peptidoglycan recognition protein-L is an N-acetylmuramoyl-L-alanine amidase. The Journal of Biological Chemistry. 278: 49044-52. PMID 14506276 DOI: 10.1074/Jbc.M307758200  0.92
2003 Cocklin RR, Wang M. Identification of methylation and acetylation sites on mouse histone H3 using matrix-assisted laser desorption/ionization time-of-flight and nanoelectrospray ionization tandem mass spectrometry. Journal of Protein Chemistry. 22: 327-34. PMID 13678296 DOI: 10.1023/A:1025334006014  0.92
2003 Zhang Y, Cocklin RR, Bidasee KR, Wang M. Rapid determination of advanced glycation end products of proteins using MALDI-TOF-MS and PERL script peptide searching algorithm. Journal of Biomolecular Techniques : Jbt. 14: 224-30. PMID 13678153  0.92
2003 Bidasee KR, Nallani K, Yu Y, Cocklin RR, Zhang Y, Wang M, Dincer UD, Besch HR. Chronic diabetes increases advanced glycation end products on cardiac ryanodine receptors/calcium-release channels. Diabetes. 52: 1825-36. PMID 12829653 DOI: 10.2337/Diabetes.52.7.1825  0.92
2003 Cocklin RR, Zhang Y, O'Neill KD, Chen NX, Moe SM, Bidasee KR, Wang M. Identity and localization of advanced glycation end products on human beta2-microglobulin using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Analytical Biochemistry. 314: 322-5. PMID 12654321 DOI: 10.1016/S0003-2697(02)00690-5  0.92
2003 O'Neill KD, Chen NX, Wang M, Cocklin R, Zhang Y, Moe SM. Cellular uptake of beta2M and AGE-beta2M in synovial fibroblasts and macrophages. Nephrology, Dialysis, Transplantation : Official Publication of the European Dialysis and Transplant Association - European Renal Association. 18: 46-53. PMID 12480959 DOI: 10.1093/Ndt/18.1.46  0.92
Low-probability matches
2016 Lass A, Cocklin R, Scaglione KM, Skowyra M, Korolev S, Goebl M, Skowyra D. Erratum to: The loop-less (tm)Cdc34 E2 mutant defective polyubiquitination in vitro and in vivo supports yeast growth in a manner dependent on Ubp14 and Cka2. Cell Division. 11: 13. PMID 27761151 DOI: 10.1186/S13008-016-0018-1  0.16
2011 Ott LW, Resing KA, Sizemore AW, Heyen JW, Cocklin RR, Pedrick NM, Woods HC, Chen JY, Goebl MG, Witzmann FA, Harrington MA. Erratum: Tumor necrosis factor-α- and interleukin-1-induced cellular responses: Coupling proteomic and genomic information (Journal of Proteome Research (2007) 6 (2176-2185) DOI: 10.1021/pr060665l) Journal of Proteome Research. 10. DOI: 10.1021/Pr200763Q  0.44
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