| Year |
Citation |
Score |
| 2023 |
Wroten M, Yoon S, Andrews P, Yamrom B, Ronemus M, Buja A, Krieger AM, Levy D, Ye K, Wigler M, Iossifov I. Sharing parental genomes by siblings concordant or discordant for autism. Cell Genomics. 3: 100319. PMID 37388917 DOI: 10.1016/j.xgen.2023.100319 |
0.497 |
|
| 2019 |
Deelen J, Evans DS, Arking DE, Tesi N, Nygaard M, Liu X, Wojczynski MK, Biggs ML, van der Spek A, Atzmon G, Ware EB, Sarnowski C, Smith AV, Seppälä I, Cordell HJ, ... ... Ye K, et al. A meta-analysis of genome-wide association studies identifies multiple longevity genes. Nature Communications. 10: 3669. PMID 31413261 DOI: 10.1038/S41467-019-11558-2 |
0.348 |
|
| 2019 |
Cleven KL, Ye K, Zeig-Owens R, Hena KM, Montagna C, Shan J, Hosgood HD, Jaber N, Weiden MD, Colbeth HL, Goldfarb DG, Spivack SD, Prezant DJ. Genetic Variants Associated with FDNY WTC-Related Sarcoidosis. International Journal of Environmental Research and Public Health. 16. PMID 31126090 DOI: 10.3390/Ijerph16101830 |
0.36 |
|
| 2018 |
Wang T, Xue X, Xie X, Ye K, Zhu X, Elston RC. Adjustment for covariates using summary statistics of genome-wide association studies. Genetic Epidemiology. PMID 30238496 DOI: 10.1002/Gepi.22148 |
0.339 |
|
| 2018 |
Ó Broin P, Beckert MV, Takahashi T, Izumi T, Ye K, Kang G, Pouso P, Topolski M, Pena JL, Hiroi N. Computational Analysis of Neonatal Mouse Ultrasonic Vocalization. Current Protocols in Mouse Biology. 8: e46. PMID 29927553 DOI: 10.1002/Cpmo.46 |
0.327 |
|
| 2017 |
Boku S, Izumi T, Abe S, Takahashi T, Nishi A, Nomaru H, Naka Y, Kang G, Nagashima M, Hishimoto A, Enomoto S, Duran-Torres G, Tanigaki K, Zhang J, Ye K, et al. Copy number elevation of 22q11.2 genes arrests the developmental maturation of working memory capacity and adult hippocampal neurogenesis. Molecular Psychiatry. PMID 28827761 DOI: 10.1038/Mp.2017.158 |
0.312 |
|
| 2017 |
Ye K, Iossifov I, Levy D, Yamrom B, Buja A, Krieger AM, Wigler M. Measuring shared variants in cohorts of discordant siblings with applications to autism. Proceedings of the National Academy of Sciences of the United States of America. PMID 28630308 DOI: 10.1073/Pnas.1700439114 |
0.306 |
|
| 2016 |
Vogt M, Yang CH, Nieves E, Ye K, Cohen P, Keller S, McDaid HM. Abstract LB-066: Proteomic-based senescent biomarker identification and characterization in non-small cell lung cancer Cancer Research. 76. DOI: 10.1158/1538-7445.Am2016-Lb-066 |
0.308 |
|
| 2015 |
Takahashi T, Okabe S, Broin PÓ, Nishi A, Ye K, Beckert MV, Izumi T, Machida A, Kang G, Abe S, Pena JL, Golden A, Kikusui T, Hiroi N. Structure and function of neonatal social communication in a genetic mouse model of autism. Molecular Psychiatry. PMID 26666205 DOI: 10.1038/Mp.2015.190 |
0.346 |
|
| 2015 |
Iossifov I, Levy D, Allen J, Ye K, Ronemus M, Lee YH, Yamrom B, Wigler M. Low load for disruptive mutations in autism genes and their biased transmission. Proceedings of the National Academy of Sciences of the United States of America. PMID 26401017 DOI: 10.1073/Pnas.1516376112 |
0.358 |
|
| 2015 |
Hu J, Zhao Z, Yalamanchili HK, Wang J, Ye K, Fan X. Bayesian detection of embryonic gene expression onset in C. elegans The Annals of Applied Statistics. 9: 950-968. DOI: 10.1214/15-Aoas820 |
0.324 |
|
| 2014 |
Iossifov I, O'Roak BJ, Sanders SJ, Ronemus M, Krumm N, Levy D, Stessman HA, Witherspoon KT, Vives L, Patterson KE, Smith JD, Paeper B, Nickerson DA, Dea J, Dong S, ... ... Ye K, et al. The contribution of de novo coding mutations to autism spectrum disorder. Nature. 515: 216-21. PMID 25363768 DOI: 10.1038/Nature13908 |
0.565 |
|
| 2013 |
Cheng G, Tang CS, Wong EH, Cheng WW, So MT, Miao X, Zhang R, Cui L, Liu X, Ngan ES, Lui VC, Chung PH, Chan IH, Liu J, Zhong W, ... ... Ye K, et al. Common genetic variants regulating ADD3 gene expression alter biliary atresia risk. Journal of Hepatology. 59: 1285-91. PMID 23872602 DOI: 10.1016/J.Jhep.2013.07.021 |
0.362 |
|
| 2012 |
Mirina A, Atzmon G, Ye K, Bergman A. Gene size matters. Plos One. 7: e49093. PMID 23152854 DOI: 10.1371/Journal.Pone.0049093 |
0.385 |
|
| 2012 |
Iossifov I, Ronemus M, Levy D, Wang Z, Hakker I, Rosenbaum J, Yamrom B, Lee YH, Narzisi G, Leotta A, Kendall J, Grabowska E, Ma B, Marks S, Rodgers L, ... ... Ye K, et al. De novo gene disruptions in children on the autistic spectrum. Neuron. 74: 285-99. PMID 22542183 DOI: 10.1016/J.Neuron.2012.04.009 |
0.376 |
|
| 2012 |
Lee YH, Ronemus M, Kendall J, Lakshmi B, Leotta A, Levy D, Esposito D, Grubor V, Ye K, Wigler M, Yamrom B. Reducing system noise in copy number data using principal components of self-self hybridizations. Proceedings of the National Academy of Sciences of the United States of America. 109: E103-10. PMID 22207624 DOI: 10.1073/Pnas.1106233109 |
0.306 |
|
| 2012 |
Wang T, Lin C, Zhang Y, Wen R, Ye K. Design and Statistical Analysis of Pooled Next Generation Sequencing for Rare Variants Journal of Probability and Statistics. 2012: 1-19. DOI: 10.1155/2012/524724 |
0.331 |
|
| 2011 |
Pradhan K, Yoon SC, Wang T, Ye K. Identification of genes and variants associated with quantitative traits using Bayesian factor screening. Bmc Proceedings. 5: S4. PMID 22373183 DOI: 10.1186/1753-6561-5-S9-S4 |
0.593 |
|
| 2011 |
Wang T, Pradhan K, Ye K, Wong LJ, Rohan TE. Estimating allele frequency from next-generation sequencing of pooled mitochondrial DNA samples. Frontiers in Genetics. 2: 51. PMID 22303347 DOI: 10.3389/Fgene.2011.00051 |
0.343 |
|
| 2011 |
Levy D, Ronemus M, Yamrom B, Lee YH, Leotta A, Kendall J, Marks S, Lakshmi B, Pai D, Ye K, Buja A, Krieger A, Yoon S, Troge J, Rodgers L, et al. Rare de novo and transmitted copy-number variation in autistic spectrum disorders. Neuron. 70: 886-97. PMID 21658582 DOI: 10.1016/J.Neuron.2011.05.015 |
0.595 |
|
| 2011 |
Mills RE, Walter K, Stewart C, Handsaker RE, Chen K, Alkan C, Abyzov A, Yoon SC, Ye K, Cheetham RK, Chinwalla A, Conrad DF, Fu Y, Grubert F, Hajirasouliha I, ... ... Ye K, et al. Mapping copy number variation by population-scale genome sequencing. Nature. 470: 59-65. PMID 21293372 DOI: 10.1038/Nature09708 |
0.573 |
|
| 2010 |
Murphy MW, Sarver AL, Rice D, Hatzi K, Ye K, Melnick A, Heckert LL, Zarkower D, Bardwell VJ. Genome-wide analysis of DNA binding and transcriptional regulation by the mammalian Doublesex homolog DMRT1 in the juvenile testis. Proceedings of the National Academy of Sciences of the United States of America. 107: 13360-5. PMID 20616082 DOI: 10.1073/Pnas.1006243107 |
0.37 |
|
| 2010 |
Wang T, Lin CY, Rohan TE, Ye K. Resequencing of pooled DNA for detecting disease associations with rare variants. Genetic Epidemiology. 34: 492-501. PMID 20578089 DOI: 10.1002/Gepi.20502 |
0.364 |
|
| 2009 |
Yoon S, Xuan Z, Makarov V, Ye K, Sebat J. Sensitive and accurate detection of copy number variants using read depth of coverage. Genome Research. 19: 1586-92. PMID 19657104 DOI: 10.1101/Gr.092981.109 |
0.587 |
|
| 2009 |
Hodges E, Smith AD, Kendall J, Xuan Z, Ravi K, Rooks M, Zhang MQ, Ye K, Bhattacharjee A, Brizuela L, McCombie WR, Wigler M, Hannon GJ, Hicks JB. High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing. Genome Research. 19: 1593-605. PMID 19581485 DOI: 10.1101/Gr.095190.109 |
0.323 |
|
| 2009 |
Ci W, Polo JM, Cerchietti L, Shaknovich R, Wang L, Yang SN, Ye K, Farinha P, Horsman DE, Gascoyne RD, Elemento O, Melnick A. The BCL6 transcriptional program features repression of multiple oncogenes in primary B cells and is deregulated in DLBCL. Blood. 113: 5536-48. PMID 19307668 DOI: 10.1182/Blood-2008-12-193037 |
0.308 |
|
| 2009 |
Wang T, Ho G, Ye K, Strickler H, Elston RC. A partial least-square approach for modeling gene-gene and gene-environment interactions when multiple markers are genotyped. Genetic Epidemiology. 33: 6-15. PMID 18615621 DOI: 10.1002/Gepi.20351 |
0.367 |
|
| 2008 |
Sohal D, Yeatts A, Ye K, Pellagatti A, Zhou L, Pahanish P, Mo Y, Bhagat T, Mariadason J, Boultwood J, Melnick A, Greally J, Verma A. Meta-analysis of microarray studies reveals a novel hematopoietic progenitor cell signature and demonstrates feasibility of inter-platform data integration. Plos One. 3: e2965. PMID 18698424 DOI: 10.1371/Journal.Pone.0002965 |
0.358 |
|
| 2008 |
Figueroa ME, Reimers M, Thompson RF, Ye K, Li Y, Selzer RR, Fridriksson J, Paietta E, Wiernik P, Green RD, Greally JM, Melnick A. An integrative genomic and epigenomic approach for the study of transcriptional regulation. Plos One. 3: e1882. PMID 18365023 DOI: 10.1371/Journal.Pone.0001882 |
0.381 |
|
| 2007 |
Bergman A, Atzmon G, Ye K, MacCarthy T, Barzilai N. Buffering mechanisms in aging: a systems approach toward uncovering the genetic component of aging. Plos Computational Biology. 3: e170. PMID 17784782 DOI: 10.1371/Journal.Pcbi.0030170 |
0.374 |
|
| 2007 |
Sebat J, Lakshmi B, Malhotra D, Troge J, Lese-Martin C, Walsh T, Yamrom B, Yoon S, Krasnitz A, Kendall J, Leotta A, Pai D, Zhang R, Lee YH, Hicks J, ... ... Ye K, et al. Strong association of de novo copy number mutations with autism. Science (New York, N.Y.). 316: 445-9. PMID 17363630 DOI: 10.1126/Science.1138659 |
0.598 |
|
| 2007 |
Polo JM, Juszczynski P, Monti S, Cerchietti L, Ye K, Greally JM, Shipp M, Melnick A. Transcriptional signature with differential expression of BCL6 target genes accurately identifies BCL6-dependent diffuse large B cell lymphomas. Proceedings of the National Academy of Sciences of the United States of America. 104: 3207-12. PMID 17360630 DOI: 10.1073/Pnas.0611399104 |
0.36 |
|
| 2007 |
Pedrosa E, Ye K, Nolan KA, Morrell L, Okun JM, Persky AD, Saito T, Lachman HM. Positive association of schizophrenia to JARID2 gene. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. 144: 45-51. PMID 16967465 DOI: 10.1002/Ajmg.B.30386 |
0.352 |
|
| 2007 |
Sohal D, Yeatts A, Ye K, Pellagatti A, Zhou L, Pahanish P, Mariadason J, Melnick A, Greally J, Boultwood J, Verma A. Data Mining of Hematopoietic Stem Cell Microarray Studies Reveals a Novel Stem Cell Gene Expression Signature and Demonstrates Feasibility of Integrating Data from Different Labs and Different Microarray Platforms. Blood. 110: 4073-4073. DOI: 10.1182/Blood.V110.11.4073.4073 |
0.367 |
|
| 2007 |
Zhou L, Opalinska J, Sohal D, Thompson R, Li Y, Kotla V, Pahanish P, Parmar S, Kambhampati S, Figueroa M, Ye K, Friedman E, Wickrema A, Melnick A, Greally J, et al. Global Epigenomic Profiling Demonstrates That Myelodysplasia Is Characterized by a Distinct Epigenetic Signature with Aberrant DNA Methylation Changes Involving Various Malignant and Hematopoietic Pathways. Blood. 110: 2436-2436. DOI: 10.1182/Blood.V110.11.2436.2436 |
0.39 |
|
| 2007 |
Opalinska J, Daibata M, Sohal D, Zhou L, Thompson R, Pahanish P, Affer M, Figueroa M, Ye K, Greally J, Bai F, List A, Melnick A, Epling-Burnette P, Verma A. Integrated Epigenomic Profiling Reveals Aberrant DNA Hypomethylation in LGL and Demonstrates That a Combination of Genetic and Epigenetic Events Results in Leukemic Evolution in Model of Large Granular Lymphocytic Leukemia. Blood. 110: 2129-2129. DOI: 10.1182/Blood.V110.11.2129.2129 |
0.422 |
|
| 2007 |
Sohal D, Opalinska J, Zhou L, Pahanish P, Friedman E, Thompson R, Ye K, Figueroa M, Melnick A, Greally J, List A, Verma A. High Resolution Epigenomic Profiling of Loss of Heterozygosity in MDS Reveals an Important Role of DNA Methylation in Regulating Expression of Genes in the Deleted Regions of Chromosomes 5q, 7q and 20q. Blood. 110: 2120-2120. DOI: 10.1182/Blood.V110.11.2120.2120 |
0.39 |
|
| 2007 |
Opalinska J, Sohal D, Thompson R, Zhou L, Li Y, Pahanish P, Kotla V, Kambhampati S, Parmar S, Friedman E, Figueroa M, Ye K, Wickrema A, Melnick A, Greally J, et al. Global DNA Methylation Profiling Demonstrates That Idiopathic Myelofibrosis Is Characterized by a Distinct Epigenetic Signature with Aberrant Methylation Changes in Genes Involved in Inflammation and Hematopoiesis Blood. 110: 1536-1536. DOI: 10.1182/Blood.V110.11.1536.1536 |
0.373 |
|
| 2006 |
Hicks J, Krasnitz A, Lakshmi B, Navin NE, Riggs M, Leibu E, Esposito D, Alexander J, Troge J, Grubor V, Yoon S, Wigler M, Ye K, Børresen-Dale AL, Naume B, et al. Novel patterns of genome rearrangement and their association with survival in breast cancer. Genome Research. 16: 1465-79. PMID 17142309 DOI: 10.1101/Gr.5460106 |
0.562 |
|
| 2006 |
Khulan B, Thompson RF, Ye K, Fazzari MJ, Suzuki M, Stasiek E, Figueroa ME, Glass JL, Chen Q, Montagna C, Hatchwell E, Selzer RR, Richmond TA, Green RD, Melnick A, et al. Comparative isoschizomer profiling of cytosine methylation: the HELP assay. Genome Research. 16: 1046-55. PMID 16809668 DOI: 10.1101/Gr.5273806 |
0.332 |
|
| 2006 |
Lachman HM, Pedrosa E, Nolan KA, Glass M, Ye K, Saito T. Analysis of polymorphisms in AT-rich domains of neuregulin 1 gene in schizophrenia. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. 141: 102-9. PMID 16287046 DOI: 10.1002/Ajmg.B.30242 |
0.348 |
|
| 2006 |
Figueroa ME, Ye K, Paietta E, Greally JM, Melnick AM. Epigenetic Signatures Accurately Distinguish Leukemia Subtypes and Provide a More Comprehensive Representation of Differentially Regulated Genes Than Gene Expression Profiling. Blood. 108: 735-735. DOI: 10.1182/Blood.V108.11.735.735 |
0.396 |
|
| 2006 |
Polo JM, Juszczynski P, Cerchietti L, Monti S, Ye K, Shipp MA, Melnick AM. A BCL6 Target Gene Signature Predicts the Biological Behavior and Classification of Diffuse Large B-Cell Lymphoma. Blood. 108: 616-616. DOI: 10.1182/Blood.V108.11.616.616 |
0.355 |
|
| 2006 |
Sohal D, Yeatts A, Opalinska J, Zhou L, Pahanish P, Ye K, Figueroa M, Mariadason J, Melnick A, Greally J, Verma A. Meta-Transcriptome of Bone Marrow Stem Cells Demonstrates Platform and Lab Dependant Variability in Gene Expression and Reveals a Novel Set of Enriched Genes. Blood. 108: 4189-4189. DOI: 10.1182/Blood.V108.11.4189.4189 |
0.375 |
|
| 2006 |
Opalinska J, Sohal D, Parmar S, Zhou L, Yeatts A, Pahanish P, Isulfi I, Ye K, Figueroa M, Melnick A, Greally J, Verma A. A High Resolution Epigenomic Map of Myelofibrosis Reveals Multiple Chromosomal Deletions and Amplifications Accompanied by a High Level of Functionally Important Methylation. Blood. 108: 2684-2684. DOI: 10.1182/Blood.V108.11.2684.2684 |
0.399 |
|
| 2006 |
Zhou L, Opalinska J, Sohal D, Parmar S, Pahanish P, Isulfi I, Ye K, Figueroa M, Greally J, Melnick A, Verma A. High Resolution Epigenomic Mapping of Myelodysplastic Syndrome Reveals a High Level of Functionally Important Methylation. Blood. 108: 2637-2637. DOI: 10.1182/Blood.V108.11.2637.2637 |
0.41 |
|
| 2006 |
Rice KL, Melnick A, Ye K, Berkofsky-Fessler W, Licht JD. A Comprehensive Genomic Approach Using Gain of Function and Loss of Function Cell Models and ChIP-on-Chip Technology Identifies Novel Promyelocytic Zinc Finger Protein Target Genes. Blood. 108: 1407-1407. DOI: 10.1182/Blood.V108.11.1407.1407 |
0.396 |
|
| 2005 |
Yoon S, Suh YJ, Mendell NR, Ye KQ. A Bayesian approach for applying Haseman-Elston methods. Bmc Genetics. 6: S39. PMID 16451649 DOI: 10.1186/1471-2156-6-S1-S39 |
0.49 |
|
| 2003 |
Oh C, Ye KQ, He Q, Mendell NR. Locating disease genes using Bayesian variable selection with the Haseman-Elston method. Bmc Genetics. 4: S69. PMID 14975137 DOI: 10.1186/1471-2156-4-S1-S69 |
0.506 |
|
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