Tom Alber - Publications

Affiliations: 
Molecular & Cell Biology University of California, Berkeley, Berkeley, CA 
Area:
Biochemistry, Molecular Biology, Cell Biology

128 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Hu S, Offenbacher AR, Thompson EM, Gee CL, Wilcoxen J, Carr CAM, Prigozhin DM, Yang V, Alber T, Britt RD, Fraser JS, Klinman JP. Biophysical Characterization of a Disabled Double Mutant of Soybean Lipoxygenase: The "Undoing" of Precise Substrate Positioning Relative to Metal Cofactor and an Identified Dynamical Network. Journal of the American Chemical Society. PMID 30645119 DOI: 10.1021/jacs.8b10992  0.6
2018 Heinkel F, Shen L, Richard-Greenblatt M, Okon M, Bui JM, Gee CL, Gay LM, Alber T, Av-Gay Y, Gsponer J, McIntosh LP. Biophysical Characterization of the Tandem FHA Domain Regulatory Module from the Mycobacteriumtuberculosis ABC Transporter Rv1747. Structure (London, England : 1993). PMID 29861345 DOI: 10.1016/j.str.2018.04.018  0.56
2017 Buchko GW, Echols N, Flynn EM, Ng H, Stephenson S, Kim HB, Myler PJ, Terwilliger TC, Alber T, Kim CY. Structural and biophysical characterization of the Mycobacterium tuberculosis protein Rv0577, a protein associated with neutral red staining of virulent tuberculosis strains and homolog of the Streptomyces coelicolor protein KbpA. Biochemistry. PMID 28692281 DOI: 10.1021/acs.biochem.7b00511  0.8
2017 Offenbacher AR, Hu S, Poss EM, Carr CAM, Scouras AD, Prigozhin DM, Iavarone AT, Palla A, Alber T, Fraser JS, Klinman JP. Hydrogen-Deuterium Exchange of Lipoxygenase Uncovers a Relationship between Distal, Solvent Exposed Protein Motions and the Thermal Activation Barrier for Catalytic Proton-Coupled Electron Tunneling. Acs Central Science. 3: 570-579. PMID 28691068 DOI: 10.1021/acscentsci.7b00142  0.6
2016 Prigozhin DM, Papavinasasundaram KG, Baer CE, Murphy KC, Moskaleva A, Chen TY, Alber T, Sassetti CM. Structural and genetic analyses of the Mycobacterium tuberculosis Protein Kinase B sensor domain identify a potential ligand binding site. The Journal of Biological Chemistry. PMID 27601474 DOI: 10.1074/jbc.M116.731760  0.6
2015 Kerns SJ, Agafonov RV, Cho YJ, Pontiggia F, Otten R, Pachov DV, Kutter S, Phung LA, Murphy PN, Thai V, Alber T, Hagan MF, Kern D. The energy landscape of adenylate kinase during catalysis. Nature Structural & Molecular Biology. 22: 124-31. PMID 25580578 DOI: 10.1038/nsmb.2941  0.8
2014 Prigozhin DM, Krieger IV, Huizar JP, Mavrici D, Waldo GS, Hung LW, Sacchettini JC, Terwilliger TC, Alber T. Subfamily-specific adaptations in the structures of two penicillin-binding proteins from Mycobacterium tuberculosis. Plos One. 9: e116249. PMID 25551456 DOI: 10.1371/journal.pone.0116249  0.6
2014 Baer CE, Iavarone AT, Alber T, Sassetti CM. Biochemical and spatial coincidence in the provisional Ser/Thr protein kinase interaction network of Mycobacterium tuberculosis. The Journal of Biological Chemistry. 289: 20422-33. PMID 24928517 DOI: 10.1074/jbc.M114.559054  0.8
2014 Hu S, Sharma SC, Scouras AD, Soudackov AV, Carr CA, Hammes-Schiffer S, Alber T, Klinman JP. Extremely elevated room-temperature kinetic isotope effects quantify the critical role of barrier width in enzymatic C-H activation. Journal of the American Chemical Society. 136: 8157-60. PMID 24884374 DOI: 10.1021/ja502726s  0.8
2014 Mavrici D, Marakalala MJ, Holton JM, Prigozhin DM, Gee CL, Zhang YJ, Rubin EJ, Alber T. Mycobacterium tuberculosis FtsX extracellular domain activates the peptidoglycan hydrolase, RipC. Proceedings of the National Academy of Sciences of the United States of America. 111: 8037-42. PMID 24843173 DOI: 10.1073/pnas.1321812111  0.8
2014 Layre E, Lee HJ, Young DC, Martinot AJ, Buter J, Minnaard AJ, Annand JW, Fortune SM, Snider BB, Matsunaga I, Rubin EJ, Alber T, Moody DB. Molecular profiling of Mycobacterium tuberculosis identifies tuberculosinyl nucleoside products of the virulence-associated enzyme Rv3378c. Proceedings of the National Academy of Sciences of the United States of America. 111: 2978-83. PMID 24516143 DOI: 10.1073/pnas.1315883111  0.8
2014 Mavrici D, Prigozhin DM, Alber T. Mycobacterium tuberculosis RpfE crystal structure reveals a positively charged catalytic cleft. Protein Science : a Publication of the Protein Society. 23: 481-7. PMID 24452911 DOI: 10.1002/pro.2431  0.8
2014 Lu H, Li Z, Xue Y, Schulze-Gahmen U, Johnson JR, Krogan NJ, Alber T, Zhou Q. AFF1 is a ubiquitous P-TEFb partner to enable Tat extraction of P-TEFb from 7SK snRNP and formation of SECs for HIV transactivation. Proceedings of the National Academy of Sciences of the United States of America. 111: E15-24. PMID 24367103 DOI: 10.1073/pnas.1318503111  0.8
2014 Lang PT, Holton JM, Fraser JS, Alber T. Protein structural ensembles are revealed by redefining X-ray electron density noise Proceedings of the National Academy of Sciences of the United States of America. 111: 237-242. PMID 24363322 DOI: 10.1073/pnas.1302823110  0.8
2014 Schulze-Gahmen U, Lu H, Zhou Q, Alber T. AFF4 binding to TAT-P-TEFb indirectly stimulates TAR recognition of super elongation complexes at the HIV promoter Elife. 2014. DOI: 10.7554/eLife.02375  0.8
2013 Hatzios SK, Baer CE, Rustad TR, Siegrist MS, Pang JM, Ortega C, Alber T, Grundner C, Sherman DR, Bertozzi CR. Osmosensory signaling in Mycobacterium tuberculosis mediated by a eukaryotic-like Ser/Thr protein kinase. Proceedings of the National Academy of Sciences of the United States of America. 110: E5069-77. PMID 24309377 DOI: 10.1073/pnas.1321205110  0.8
2013 Prigozhin DM, Mavrici D, Huizar JP, Vansell HJ, Alber T. Structural and biochemical analyses of Mycobacterium tuberculosis N-acetylmuramyl-L-alanine amidase Rv3717 point to a role in peptidoglycan fragment recycling. The Journal of Biological Chemistry. 288: 31549-55. PMID 24019530 DOI: 10.1074/jbc.M113.510792  0.8
2013 Schulze-Gahmen U, Upton H, Birnberg A, Bao K, Chou S, Krogan NJ, Zhou Q, Alber T. The AFF4 scaffold binds human P-TEFb adjacent to HIV Tat. Elife. 2: e00327. PMID 23471103 DOI: 10.7554/eLife.00327  0.8
2013 Chao MC, Kieser KJ, Minami S, Mavrici D, Aldridge BB, Fortune SM, Alber T, Rubin EJ. Protein complexes and proteolytic activation of the cell wall hydrolase RipA regulate septal resolution in mycobacteria. Plos Pathogens. 9: e1003197. PMID 23468634 DOI: 10.1371/journal.ppat.1003197  0.8
2013 Katibah GE, Lee HJ, Huizar JP, Vogan JM, Alber T, Collins K. tRNA binding, structure, and localization of the human interferon-induced protein IFIT5. Molecular Cell. 49: 743-50. PMID 23317505 DOI: 10.1016/j.molcel.2012.12.015  0.8
2013 Chou S, Upton H, Bao K, Schulze-Gahmen U, Samelson AJ, He N, Nowak A, Lu H, Krogan NJ, Zhou Q, Alber T. HIV-1 Tat recruits transcription elongation factors dispersed along a flexible AFF4 scaffold. Proceedings of the National Academy of Sciences of the United States of America. 110: E123-31. PMID 23251033 DOI: 10.1073/pnas.1216971110  0.8
2012 Cozzi R, Prigozhin D, Rosini R, Abate F, Bottomley MJ, Grandi G, Telford JL, Rinaudo CD, Maione D, Alber T. Structural basis for group B streptococcus pilus 1 sortases C regulation and specificity. Plos One. 7: e49048. PMID 23145064 DOI: 10.1371/journal.pone.0049048  0.8
2012 Lee HJ, Lang PT, Fortune SM, Sassetti CM, Alber T. Cyclic AMP regulation of protein lysine acetylation in Mycobacterium tuberculosis. Nature Structural & Molecular Biology. 19: 811-8. PMID 22773105 DOI: 10.1038/nsmb.2318  0.8
2012 Cavazos A, Prigozhin DM, Alber T. Structure of the sensor domain of Mycobacterium tuberculosis PknH receptor kinase reveals a conserved binding cleft. Journal of Molecular Biology. 422: 488-94. PMID 22727744 DOI: 10.1016/j.jmb.2012.06.011  0.8
2012 Totir M, Echols N, Nanao M, Gee CL, Moskaleva A, Gradia S, Iavarone AT, Berger JM, May AP, Zubieta C, Alber T. Macro-to-micro structural proteomics: native source proteins for high-throughput crystallization. Plos One. 7: e32498. PMID 22393408 DOI: 10.1371/journal.pone.0032498  0.8
2012 Tosha T, Behera RK, Ng HL, Bhattasali O, Alber T, Theil EC. Ferritin protein nanocage ion channels: gating by N-terminal extensions. The Journal of Biological Chemistry. 287: 13016-25. PMID 22362775 DOI: 10.1074/jbc.M111.332734  0.8
2012 Gee CL, Papavinasasundaram KG, Blair SR, Baer CE, Falick AM, King DS, Griffin JE, Venghatakrishnan H, Zukauskas A, Wei JR, Dhiman RK, Crick DC, Rubin EJ, Sassetti CM, Alber T. A phosphorylated pseudokinase complex controls cell wall synthesis in mycobacteria. Science Signaling. 5: ra7. PMID 22275220 DOI: 10.1126/scisignal.2002525  0.8
2012 Jäger S, Cimermancic P, Gulbahce N, Johnson JR, McGovern KE, Clarke SC, Shales M, Mercenne G, Pache L, Li K, Hernandez H, Jang GM, Roth SL, Akiva E, Marlett J, ... ... Alber T, et al. Global landscape of HIV-human protein complexes. Nature. 481: 365-70. PMID 22190034 DOI: 10.1038/nature10719  0.8
2011 Fraser JS, Van Den Bedem H, Samelson AJ, Lang PT, Holton JM, Echols N, Alber T. Accessing protein conformational ensembles using room-temperature X-ray crystallography Proceedings of the National Academy of Sciences of the United States of America. 108: 16247-16252. PMID 21918110 DOI: 10.1073/pnas.1111325108  0.8
2011 He N, Chan CK, Sobhian B, Chou S, Xue Y, Liu M, Alber T, Benkirane M, Zhou Q. Human Polymerase-Associated Factor complex (PAFc) connects the Super Elongation Complex (SEC) to RNA polymerase II on chromatin. Proceedings of the National Academy of Sciences of the United States of America. 108: E636-45. PMID 21873227 DOI: 10.1073/pnas.1107107108  0.8
2011 Chou S, Krasileva KV, Holton JM, Steinbrenner AD, Alber T, Staskawicz BJ. Hyaloperonospora arabidopsidis ATR1 effector is a repeat protein with distributed recognition surfaces. Proceedings of the National Academy of Sciences of the United States of America. 108: 13323-8. PMID 21788488 DOI: 10.1073/pnas.1109791108  0.8
2011 Wei JR, Krishnamoorthy V, Murphy K, Kim JH, Schnappinger D, Alber T, Sassetti CM, Rhee KY, Rubin EJ. Depletion of antibiotic targets has widely varying effects on growth. Proceedings of the National Academy of Sciences of the United States of America. 108: 4176-81. PMID 21368134 DOI: 10.1073/pnas.1018301108  0.8
2011 Sharma AK, Ye L, Baer CE, Shanmugasundaram K, Alber T, Alper SL, Rigby AC. Solution structure of the guanine nucleotide-binding STAS domain of SLC26-related SulP protein Rv1739c from Mycobacterium tuberculosis. The Journal of Biological Chemistry. 286: 8534-44. PMID 21190940 DOI: 10.1074/jbc.M110.165449  0.8
2011 Jäger S, Gulbahce N, Cimermancic P, Kane J, He N, Chou S, D'Orso I, Fernandes J, Jang G, Frankel AD, Alber T, Zhou Q, Krogan NJ. Purification and characterization of HIV-human protein complexes. Methods (San Diego, Calif.). 53: 13-9. PMID 20708689 DOI: 10.1016/j.ymeth.2010.08.007  0.8
2010 Lombana TN, Echols N, Good MC, Thomsen ND, Ng HL, Greenstein AE, Falick AM, King DS, Alber T. Allosteric activation mechanism of the Mycobacterium tuberculosis receptor Ser/Thr protein kinase, PknB. Structure (London, England : 1993). 18: 1667-77. PMID 21134645 DOI: 10.1016/j.str.2010.09.019  0.8
2010 Tosha T, Ng HL, Bhattasali O, Alber T, Theil EC. Moving metal ions through ferritin-protein nanocages from three-fold pores to catalytic sites. Journal of the American Chemical Society. 132: 14562-9. PMID 20866049 DOI: 10.1021/ja105583d  0.8
2010 Prach L, Kirby J, Keasling JD, Alber T. Diterpene production in Mycobacterium tuberculosis. The Febs Journal. 277: 3588-95. PMID 20670276 DOI: 10.1111/j.1742-4658.2010.07767.x  0.8
2010 Lang PT, Ng HL, Fraser JS, Corn JE, Echols N, Sales M, Holton JM, Alber T. Automated electron-density sampling reveals widespread conformational polymorphism in proteins. Protein Science : a Publication of the Protein Society. 19: 1420-31. PMID 20499387 DOI: 10.1002/pro.423  0.8
2010 He N, Liu M, Hsu J, Xue Y, Chou S, Burlingame A, Krogan NJ, Alber T, Zhou Q. HIV-1 Tat and host AFF4 recruit two transcription elongation factors into a bifunctional complex for coordinated activation of HIV-1 transcription. Molecular Cell. 38: 428-38. PMID 20471948 DOI: 10.1016/j.molcel.2010.04.013  0.8
2010 Chou S, Jensen BC, Parsons M, Alber T, Grundner C. The Trypanosoma brucei life cycle switch TbPTP1 is structurally conserved and dephosphorylates the nucleolar protein NOPP44/46. The Journal of Biological Chemistry. 285: 22075-81. PMID 20444707 DOI: 10.1074/jbc.M110.108860  0.8
2010 Flynn EM, Hanson JA, Alber T, Yang H. Dynamic active-site protection by the M. tuberculosis protein tyrosine phosphatase PtpB lid domain. Journal of the American Chemical Society. 132: 4772-80. PMID 20230004 DOI: 10.1021/ja909968n  0.8
2009 Fraser JS, Clarkson MW, Degnan SC, Erion R, Kern D, Alber T. Hidden alternative structures of proline isomerase essential for catalysis Nature. 462: 669-673. PMID 19956261 DOI: 10.1038/nature08615  0.8
2009 Lin MZ, McKeown MR, Ng HL, Aguilera TA, Shaner NC, Campbell RE, Adams SR, Gross LA, Ma W, Alber T, Tsien RY. Autofluorescent proteins with excitation in the optical window for intravital imaging in mammals. Chemistry & Biology. 16: 1169-79. PMID 19942140 DOI: 10.1016/j.chembiol.2009.10.009  0.8
2009 Alber T. Signaling mechanisms of the Mycobacterium tuberculosis receptor Ser/Thr protein kinases. Current Opinion in Structural Biology. 19: 650-7. PMID 19914822 DOI: 10.1016/j.sbi.2009.10.017  0.8
2009 Rawls KA, Lang PT, Takeuchi J, Imamura S, Baguley TD, Grundner C, Alber T, Ellman JA. Fragment-based discovery of selective inhibitors of the Mycobacterium tuberculosis protein tyrosine phosphatase PtpA. Bioorganic & Medicinal Chemistry Letters. 19: 6851-4. PMID 19889539 DOI: 10.1016/j.bmcl.2009.10.090  0.8
2009 Greenstein AE, Hammel M, Cavazos A, Alber T. Interdomain communication in the Mycobacterium tuberculosis environmental phosphatase Rv1364c. The Journal of Biological Chemistry. 284: 29828-35. PMID 19700407 DOI: 10.1074/jbc.M109.056168  0.8
2008 Mieczkowski C, Iavarone AT, Alber T. Auto-activation mechanism of the Mycobacterium tuberculosis PknB receptor Ser/Thr kinase. The Embo Journal. 27: 3186-97. PMID 19008858 DOI: 10.1038/emboj.2008.236  0.8
2008 Grundner C, Cox JS, Alber T. Protein tyrosine phosphatase PtpA is not required for Mycobacterium tuberculosis growth in mice. Fems Microbiology Letters. 287: 181-4. PMID 18752626 DOI: 10.1111/j.1574-6968.2008.01309.x  0.8
2008 Barth P, Schoeffler A, Alber T. Targeting metastable coiled-coil domains by computational design. Journal of the American Chemical Society. 130: 12038-44. PMID 18698842 DOI: 10.1021/ja802447e  0.8
2008 Bertin A, McMurray MA, Grob P, Park SS, Garcia G, Patanwala I, Ng HL, Alber T, Thorner J, Nogales E. Saccharomyces cerevisiae septins: supramolecular organization of heterooligomers and the mechanism of filament assembly. Proceedings of the National Academy of Sciences of the United States of America. 105: 8274-9. PMID 18550837 DOI: 10.1073/pnas.0803330105  0.8
2007 Murillo AC, Li HY, Alber T, Baker EN, Berger JM, Cherney LT, Cherney MM, Cho YS, Eisenberg D, Garen CR, Goulding CW, Hung LW, Ioerger TR, Jacobs WR, James MN, et al. High throughput crystallography of TB drug targets. Infectious Disorders Drug Targets. 7: 127-39. PMID 17970224 DOI: 10.2174/187152607781001853  0.8
2007 Sales M, Plecs JJ, Holton JM, Alber T. Structure of a designed, right-handed coiled-coil tetramer containing all biological amino acids. Protein Science : a Publication of the Protein Society. 16: 2224-32. PMID 17766380 DOI: 10.1110/ps.062702907  0.8
2007 Soellner MB, Rawls KA, Grundner C, Alber T, Ellman JA. Fragment-based substrate activity screening method for the identification of potent inhibitors of the Mycobacterium tuberculosis phosphatase PtpB. Journal of the American Chemical Society. 129: 9613-5. PMID 17636914 DOI: 10.1021/ja0727520  0.8
2007 Fraser JS, Merlie JP, Echols N, Weisfield SR, Mignot T, Wemmer DE, Zusman DR, Alber T. An atypical receiver domain controls the dynamic polar localization of the Myxococcus xanthus social motility protein FrzS. Molecular Microbiology. 65: 319-32. PMID 17573816 DOI: 10.1111/j.1365-2958.2007.05785.x  0.8
2007 Grundner C, Perrin D, Hooft van Huijsduijnen R, Swinnen D, Gonzalez J, Gee CL, Wells TN, Alber T. Structural basis for selective inhibition of Mycobacterium tuberculosis protein tyrosine phosphatase PtpB. Structure (London, England : 1993). 15: 499-509. PMID 17437721 DOI: 10.1016/j.str.2007.03.003  0.8
2007 Greenstein AE, MacGurn JA, Baer CE, Falick AM, Cox JS, Alber T. M. tuberculosis Ser/Thr protein kinase D phosphorylates an anti-anti-sigma factor homolog. Plos Pathogens. 3: e49. PMID 17411339 DOI: 10.1371/journal.ppat.0030049  0.8
2007 Cellitti J, Llinas M, Echols N, Shank EA, Gillespie B, Kwon E, Crowder SM, Dahlquist FW, Alber T, Marqusee S. Exploring subdomain cooperativity in T4 lysozyme I: structural and energetic studies of a circular permutant and protein fragment. Protein Science : a Publication of the Protein Society. 16: 842-51. PMID 17400926 DOI: 10.1110/ps.062628607  0.8
2007 Barth P, Alber T, Harbury PB. Accurate, conformation-dependent predictions of solvent effects on protein ionization constants. Proceedings of the National Academy of Sciences of the United States of America. 104: 4898-903. PMID 17360348 DOI: 10.1073/pnas.0700188104  0.8
2007 Greenstein AE, Echols N, Lombana TN, King DS, Alber T. Allosteric activation by dimerization of the PknD receptor Ser/Thr protein kinase from Mycobacterium tuberculosis. The Journal of Biological Chemistry. 282: 11427-35. PMID 17242402 DOI: 10.1074/jbc.M610193200  0.8
2006 Gay LM, Ng HL, Alber T. A conserved dimer and global conformational changes in the structure of apo-PknE Ser/Thr protein kinase from Mycobacterium tuberculosis. Journal of Molecular Biology. 360: 409-20. PMID 16762364 DOI: 10.1016/j.jmb.2006.05.015  0.8
2006 Alber T, Endrizzi JA, Schachman HK, Beernink PT. Binding of bisubstrate analog promotes large structural changes in the unregulated catalytic trimer of aspartate transcarbamoylase: Implications for allosteric regulation Rendiconti Lincei. 17: 133-145. DOI: 10.1007/BF02904505  0.8
2005 Greenstein AE, Grundner C, Echols N, Gay LM, Lombana TN, Miecskowski CA, Pullen KE, Sung PY, Alber T. Structure/function studies of Ser/Thr and Tyr protein phosphorylation in Mycobacterium tuberculosis. Journal of Molecular Microbiology and Biotechnology. 9: 167-81. PMID 16415590 DOI: 10.1159/000089645  0.8
2005 Grundner C, Ng HL, Alber T. Mycobacterium tuberculosis protein tyrosine phosphatase PtpB structure reveals a diverged fold and a buried active site. Structure (London, England : 1993). 13: 1625-34. PMID 16271885 DOI: 10.1016/j.str.2005.07.017  0.8
2005 Grundner C, Gay LM, Alber T. Mycobacterium tuberculosis serine/threonine kinases PknB, PknD, PknE, and PknF phosphorylate multiple FHA domains. Protein Science : a Publication of the Protein Society. 14: 1918-21. PMID 15987910 DOI: 10.1110/ps.051413405  0.8
2004 Pullen KE, Ng HL, Sung PY, Good MC, Smith SM, Alber T. An alternate conformation and a third metal in PstP/Ppp, the M. tuberculosis PP2C-Family Ser/Thr protein phosphatase. Structure (London, England : 1993). 12: 1947-54. PMID 15530359 DOI: 10.1016/j.str.2004.09.008  0.8
2004 MacDowell AA, Celestre RS, Howells M, McKinney W, Krupnick J, Cambie D, Domning EE, Duarte RM, Kelez N, Plate DW, Cork CW, Earnest TN, Dickert J, Meigs G, Ralston C, ... ... Alber T, et al. Suite of three protein crystallography beamlines with single superconducting bend magnet as the source. Journal of Synchrotron Radiation. 11: 447-55. PMID 15496731 DOI: 10.1107/S0909049504024835  0.8
2004 Plecs JJ, Harbury PB, Kim PS, Alber T. Structural test of the parameterized-backbone method for protein design. Journal of Molecular Biology. 342: 289-97. PMID 15313624 DOI: 10.1016/j.jmb.2004.06.051  0.8
2004 Versele M, Gullbrand B, Shulewitz MJ, Cid VJ, Bahmanyar S, Chen RE, Barth P, Alber T, Thorner J. Protein-protein interactions governing septin heteropentamer assembly and septin filament organization in Saccharomyces cerevisiae. Molecular Biology of the Cell. 15: 4568-83. PMID 15282341 DOI: 10.1091/mbc.E04-04-0330  0.8
2004 Rose RB, Pullen KE, Bayle JH, Crabtree GR, Alber T. Biochemical and structural basis for partially redundant enzymatic and transcriptional functions of DCoH and DCoH2. Biochemistry. 43: 7345-55. PMID 15182178 DOI: 10.1021/bi049620t  0.8
2004 Good MC, Greenstein AE, Young TA, Ng HL, Alber T. Sensor domain of the Mycobacterium tuberculosis receptor Ser/Thr protein kinase, PknD, forms a highly symmetric beta propeller. Journal of Molecular Biology. 339: 459-69. PMID 15136047 DOI: 10.1016/j.jmb.2004.03.063  0.8
2004 Holton J, Alber T. Automated protein crystal structure determination using ELVES. Proceedings of the National Academy of Sciences of the United States of America. 101: 1537-42. PMID 14752198 DOI: 10.1073/pnas.0306241101  0.8
2003 Terwilliger TC, Park MS, Waldo GS, Berendzen J, Hung LW, Kim CY, Smith CV, Sacchettini JC, Bellinzoni M, Bossi R, De Rossi E, Mattevi A, Milano A, Riccardi G, Rizzi M, ... ... Alber T, et al. The TB structural genomics consortium: a resource for Mycobacterium tuberculosis biology. Tuberculosis (Edinburgh, Scotland). 83: 223-49. PMID 12906835 DOI: 10.1016/S1472-9792(03)00051-9  0.8
2003 Young TA, Delagoutte B, Endrizzi JA, Falick AM, Alber T. Structure of Mycobacterium tuberculosis PknB supports a universal activation mechanism for Ser/Thr protein kinases. Nature Structural Biology. 10: 168-74. PMID 12548283 DOI: 10.1038/nsb897  0.8
2002 Goulding CW, Apostol M, Anderson DH, Gill HS, Smith CV, Kuo MR, Yang JK, Waldo GS, Suh SW, Chauhan R, Kale A, Bachhawat N, Mande SC, Johnston JM, Lott JS, ... ... Alber T, et al. The TB structural genomics consortium: providing a structural foundation for drug discovery. Current Drug Targets. Infectious Disorders. 2: 121-41. PMID 12462144 DOI: 10.2174/1568005023342551  0.8
2002 Arndt KM, Pelletier JN, Müller KM, Plückthun A, Alber T. Comparison of in vivo selection and rational design of heterodimeric coiled coils. Structure (London, England : 1993). 10: 1235-48. PMID 12220495 DOI: 10.1016/S0969-2126(02)00838-9  0.8
2001 Corbett KD, Alber T. The many faces of Ras: recognition of small GTP-binding proteins. Trends in Biochemical Sciences. 26: 710-6. PMID 11738594 DOI: 10.1016/S0968-0004(01)01974-0  0.8
2001 Crowder S, Holton J, Alber T. Covariance analysis of RNA recognition motifs identifies functionally linked amino acids Journal of Molecular Biology. 310: 793-800. PMID 11453688 DOI: 10.1006/jmbi.2001.4740  0.8
2001 Lougheed JC, Holton JM, Alber T, Bazan JF, Handel TM. Structure of melanoma inhibitory activity protein, a member of a recently identified family of secreted proteins. Proceedings of the National Academy of Sciences of the United States of America. 98: 5515-20. PMID 11331761 DOI: 10.1073/pnas.091601698  0.8
2000 Rose RB, Endrizzi JA, Cronk JD, Holton J, Alber T. High-resolution structure of the HNF-1alpha dimerization domain. Biochemistry. 39: 15062-70. PMID 11106484 DOI: 10.1021/bi001996t  0.8
2000 Muller KM, Arndt KM, Alber T. Protein fusions to coiled-coil domains Methods in Enzymology. 328: 261-282. PMID 11075350  0.8
2000 Rose RB, Bayle JH, Endrizzi JA, Cronk JD, Crabtree GR, Alber T. Structural basis of dimerization, coactivator recognition and MODY3 mutations in HNF-1alpha. Nature Structural Biology. 7: 744-8. PMID 10966642 DOI: 10.1038/78966  0.8
2000 Day CL, Alber T. Crystal structure of the amino-terminal coiled-coil domain of the APC tumor suppressor Journal of Molecular Biology. 301: 147-156. PMID 10926498 DOI: 10.1006/jmbi.2000.3895  0.8
2000 Endrizzi JA, Beernink PT, Alber T, Schachman HK. Binding of bisubstrate analog promotes large structural changes in the unregulated catalytic trimer of aspartate transcarbamoylase: implications for allosteric regulation. Proceedings of the National Academy of Sciences of the United States of America. 97: 5077-82. PMID 10805770 DOI: 10.1073/pnas.090087197  0.8
2000 Arndt KM, Pelletier JN, Müller KM, Alber T, Michnick SW, Plückthun A. A heterodimeric coiled-coil peptide pair selected in vivo from a designed library-versus-library ensemble. Journal of Molecular Biology. 295: 627-39. PMID 10623552 DOI: 10.1006/jmbi.1999.3352  0.8
1999 McWhirter SM, Pullen SS, Werneburg BG, Labadia ME, Ingraham RH, Crute JJ, Kehry MR, Alber T. Structural and biochemical analysis of signal transduction by the TRAF family of adapter proteins. Cold Spring Harbor Symposia On Quantitative Biology. 64: 551-62. PMID 11232332  0.8
1999 Pullen SS, Labadia ME, Ingraham RH, McWhirter SM, Everdeen DS, Alber T, Crute JJ, Kehry MR. High-affinity interactions of tumor necrosis factor receptor-associated factors (TRAFs) and CD40 require TRAF trimerization and CD40 multimerization. Biochemistry. 38: 10168-77. PMID 10433725 DOI: 10.1021/bi9909905  0.8
1999 McWhirter SM, Pullen SS, Holton JM, Crute JJ, Kehry MR, Alber T. Crystallographic analysis of CD40 recognition and signaling by human TRAF2. Proceedings of the National Academy of Sciences of the United States of America. 96: 8408-13. PMID 10411888 DOI: 10.1073/pnas.96.15.8408  0.8
1999 Hershey PE, McWhirter SM, Gross JD, Wagner G, Alber T, Sachs AB. The Cap-binding protein eIF4E promotes folding of a functional domain of yeast translation initiation factor eIF4G1. The Journal of Biological Chemistry. 274: 21297-304. PMID 10409688 DOI: 10.1074/jbc.274.30.21297  0.8
1999 Beernink PT, Endrizzi JA, Alber T, Schachman HK. Assessment of the allosteric mechanism of aspartate transcarbamoylase based on the crystalline structure of the unregulated catalytic subunit Proceedings of the National Academy of Sciences of the United States of America. 96: 5388-5393. PMID 10318893 DOI: 10.1073/pnas.96.10.5388  0.8
1999 Crowder SM, Kanaar R, Rio DC, Alber T. Absence of interdomain contacts in the crystal structure of the RNA recognition motifs of Sex-lethal. Proceedings of the National Academy of Sciences of the United States of America. 96: 4892-7. PMID 10220389 DOI: 10.1073/pnas.96.9.4892  0.8
1999 Nautiyal S, Alber T. Crystal structure of a designed, thermostable, heterotrimeric coiled coil Protein Science. 8: 84-90. PMID 10210186  0.8
1998 Harbury PB, Plecs JJ, Tidor B, Alber T, Kim PS. High-resolution protein design with backbone freedom. Science (New York, N.Y.). 282: 1462-7. PMID 9822371  0.8
1998 Sharma VA, Logan J, King DS, White R, Alber T. Sequence-based design of a peptide probe for the APC tumor suppressor protein Current Biology. 8: 823-830. PMID 9663391  0.8
1996 Gonzalez L, Woolfson DN, Alber T. Buried polar residues and structural specificity in the GCN4 leucine zipper Nature Structural Biology. 3: 1011-1018. PMID 8946854 DOI: 10.1038/nsb1296-1011  0.8
1996 Gonzalez L, Brown RA, Richardson D, Alber T. Crystal structures of a single coiled-coil peptide in two oligomeric states reveal the basis for structural polymorphism Nature Structural Biology. 3: 1002-1010. PMID 8946853 DOI: 10.1038/nsb1296-1002  0.8
1996 Cronk JD, Endrizzi JA, Alber T. High-resolution structures of the bifunctional enzyme and transcriptional coactivator DCoH and its complex with a product analogue Protein Science. 5: 1963-1972. PMID 8897596  0.8
1996 Gonzalez L, Plecs JJ, Alber T. An engineered allosteric switch in leucine-zipper oligomerization Nature Structural Biology. 3: 510-515. PMID 8646536 DOI: 10.1038/nsb0696-510  0.8
1996 Woolfson DN, Alber T. Sequence determinants of oligomer selection in coiled coils Techniques in Protein Chemistry. 7: 409-418. DOI: 10.1016/S1080-8914(96)80045-7  0.8
1995 Woolfson DN, Alber T. Predicting oligomerization states of coiled coils Protein Science. 4: 1596-1607. PMID 8520486  0.8
1995 Endrizzi JA, Cronk JD, Wang W, Crabtree GR, Alber T. Crystal structure of DCoH, a bifunctional, protein-binding transcriptional coactivator. Science (New York, N.Y.). 268: 556-9. PMID 7725101  0.8
1995 Petersen JM, Skalicky JJ, Donaldson LW, McIntosh LP, Alber T, Gravest BJ. Modulation of transcription factor Ets-1 DNA binding: DNA-induced unfolding of an α helix Science. 269: 1866-1869. PMID 7569926  0.8
1995 Nautiyal S, Woolfson DN, King DS, Alber T. A designed heterotrimeric coiled coil Biochemistry. 34: 11645-11651. PMID 7547896  0.8
1994 Harbury PB, Kim PS, Alber T. Crystal structure of an isoleucine-zipper trimer Nature. 371: 80-83. PMID 8072533 DOI: 10.1038/371080a0  0.8
1994 Zhang T, Bertelsen E, Alber T. Entropie effects of disulphide bonds on protein stability Nature Structural Biology. 1: 434-438. PMID 7664061 DOI: 10.1038/nsb0794-434  0.8
1993 Harbury PB, Zhang T, Kim PS, Alber T. a switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants Science. 262: 1401-1407. PMID 8248779  0.8
1993 Joslyn G, Richardson DS, White R, Alber T. Dimer formation by an N-terminal coiled coil in the APC protein. Proceedings of the National Academy of Sciences of the United States of America. 90: 11109-13. PMID 8248216  0.8
1993 Zhang T, Bertelsen E, Benvegnu D, Alber T. Circular permutation of T4 lysozyme Biochemistry. 32: 12311-12318. PMID 8241117 DOI: 10.1021/bi00097a006  0.8
1993 Alber T. How GCN4 binds DNA Current Biology. 3: 182-184. DOI: 10.1016/0960-9822(93)90268-S  0.8
1992 Alber T. Structure of the leucine zipper Current Opinion in Genetics and Development. 2: 205-210. PMID 1638114 DOI: 10.1016/S0959-437X(05)80275-8  0.8
1991 Rasmussen R, Benvegnu D, O'Shea EK, Kim PS, Alber T. X-ray scattering indicates that the leucine zipper is a coiled coil. Proceedings of the National Academy of Sciences of the United States of America. 88: 561-4. PMID 1988953  0.8
1991 O'Shea EK, Klemm JD, Kim PS, Alber T. X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil. Science (New York, N.Y.). 254: 539-44. PMID 1948029  0.8
1991 Daopin S, Alber T, Baase WA, Wozniak JA, Matthews BW. Structural and thermodynamic analysis of the packing of two α-helices in bacteriophage T4 lysozyme Journal of Molecular Biology. 221: 647-667. PMID 1920439 DOI: 10.1016/0022-2836(91)80079-A  0.8
1991 Kuby SA, Fleming G, Alber T, Richardson D, Takenaka H, Hamada M. Studies on yeast nucleoside triphosphate-nucleoside diphosphate transphosphorylase (nucleoside diphosphokinase). IV. Steady-state kinetic properties with thymidine nucleotides (including 3'-azido-3'deoxythymidine analogues) Enzyme. 45: 1-13. PMID 1666874  0.8
1989 Alber T. Mutational effects on protein stability Annual Review of Biochemistry. 58: 765-798. PMID 2673021  0.8
1988 Alber T, Bell JA, Dao-Pin S, Nicholson H, Wozniak JA, Cook S, Matthews BW. Replacements of Pro86 in phage T4 lysozyme extend an α-helix but do not alter protein stability Science. 239: 631-635. PMID 3277275  0.8
1987 Grütter MG, Gray TM, Weaver LH, Alber T, Wilson K, Matthews BW. Structural studies of mutants of the lysozyme of bacteriophage T4. The temperature-sensitive mutant protein Thr157 → Ile Journal of Molecular Biology. 197: 315-329. PMID 3681997 DOI: 10.1016/0022-2836(87)90126-4  0.8
1987 Alber T, Sun DP, Nye JA, Muchmore DC, Matthews BW. Temperature-sensitive mutations of bacteriophage T4 lysozyme occur at sites with low mobility and low solvent accessibility in the folded protein. Biochemistry. 26: 3754-8. PMID 3651410  0.8
1987 Dao-Pin S, Alber T, Bell JA, Weaver LH, Matthews BW. Use of site-directed mutagenesis to obtain isomorphous heavy-atom derivatives for protein crystallography: Cysteine-containing mutants of phage t4 lysozyme Protein Engineering, Design and Selection. 1: 115-123. PMID 3507694 DOI: 10.1093/protein/1.2.115  0.8
1987 Alber TC, Davenport RC, Giammona DA, Lolis E, Petsko GA, Ringe D. Crystallography and site-directed mutagenesis of yeast triosephosphate isomerase: what can we learn about catalysis from a "simple" enzyme? Cold Spring Harbor Symposia On Quantitative Biology. 52: 603-13. PMID 3331346  0.8
1987 Alber T, Matthews BW. [27] Structure and thermal stability of phage T4 lysozyme Methods in Enzymology. 154: 511-533. PMID 3323816 DOI: 10.1016/0076-6879(87)54093-9  0.8
1987 Alber T, Sun DP, Wilson K, Wozniak JA, Cook SP, Matthews BW. Contributions of hydrogen bonds of Thr 157 to the thermodynamic stability of phage T4 lysozyme. Nature. 330: 41-6. PMID 3118211 DOI: 10.1038/330041a0  0.8
1985 Alber T, Wozniak JA. A genetic screen for mutations that increase the thermal stability of phage T4 lysozyme Proceedings of the National Academy of Sciences of the United States of America. 82: 747-750. PMID 3856227  0.8
1983 Alber T, Gilbert WA, Ponzi DR, Petsko GA. The role of mobility in the substrate binding and catalytic machinery of enzymes Ciba Foundation Symposium. 93: 4-24. PMID 6551232  0.8
1982 Alber T, Kawasaki G. Nucleotide sequence of the triose phosphate isomerase gene of Saccharomyces cerevisiae Journal of Molecular and Applied Genetics. 1: 419-434. PMID 6759603  0.8
1981 Alber T, Fahnestock M, Mowbray SL, Petsko GA. Preliminary x-ray data for the galactose binding protein from Salmonella typhimurium. Journal of Molecular Biology. 147: 471-4. PMID 7031261 DOI: 10.1016/0022-2836(81)90497-6  0.8
1981 Alber T, Hartman FC, Johnson RM, Petsko GA, Tsernoglou D. Crystallization of yeast triose phosphate isomerase from polyethylene glycol. Protein crystal formation following phase separation Journal of Biological Chemistry. 256: 1356-1361. PMID 7005233  0.8
1981 Alber T, Banner DW, Bloomer AC, Petsko GA, Phillips D, Rivers PS, Wilson IA. On the three-dimensional structure and catalytic mechanism of triose phosphate isomerase Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences. 293: 159-171. PMID 6115415  0.8
1976 Alber T, Petsko GA, Tsernoglou D. Crystal structure of elastase-substrate complex at -55 °C Nature. 263: 297-300. PMID 958484 DOI: 10.1038/263297a0  0.8
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