Ramanjulu Sunkar - Publications

Affiliations: 
Biochemistry & Molecular Biology Oklahoma State University, Stillwater, OK, United States 
Area:
Molecular Biology, Bioinformatics Biology, Plant Physiology, Alternative Energy

73 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Li YF, Zhao M, Wang M, Guo J, Wang L, Ji J, Qiu Z, Zheng Y, Sunkar R. An improved method of constructing degradome library suitable for sequencing using Illumina platform. Plant Methods. 15: 134. PMID 31832076 DOI: 10.1186/s13007-019-0524-7  0.48
2019 Seeve CM, Sunkar R, Zheng Y, Liu L, Liu Z, McMullen M, Nelson S, Sharp RE, Oliver MJ. Water-deficit responsive microRNAs in the primary root growth zone of maize. Bmc Plant Biology. 19: 447. PMID 31651253 DOI: 10.1186/s12870-019-2037-y  0.48
2019 Guo J, Wang Q, Liu L, Ren S, Li S, Liao P, Zhao Z, Lu C, Jiang B, Sunkar R, Zheng Y. Analysis of microRNAs, phased small interfering RNAs and their potential targets in Rosarugosa Thunb. Bmc Genomics. 19: 983. PMID 30999850 DOI: 10.1186/s12864-018-5325-2  0.48
2018 Pokoo R, Ren S, Wang Q, Motes CM, Hernandez TD, Ahmadi S, Monteros MJ, Zheng Y, Sunkar R. Genotype- and tissue-specific miRNA profiles and their targets in three alfalfa (Medicago sativa L) genotypes. Bmc Genomics. 19: 913. PMID 30598106 DOI: 10.1186/s12864-018-5280-y  0.48
2018 Li YF, Zheng Y, Vemireddy LR, Panda SK, Jose S, Ranjan A, Panda P, Govindan G, Cui J, Wei K, Yaish MW, Naidoo GC, Sunkar R. Comparative transcriptome and translatome analysis in contrasting rice genotypes reveals differential mRNA translation in salt-tolerant Pokkali under salt stress. Bmc Genomics. 19: 935. PMID 30598105 DOI: 10.1186/s12864-018-5279-4  0.48
2018 Liu L, Ren S, Guo J, Wang Q, Zhang X, Liao P, Li S, Sunkar R, Zheng Y. Genome-wide identification and comprehensive analysis of microRNAs and phased small interfering RNAs in watermelon. Bmc Genomics. 19: 111. PMID 29764387 DOI: 10.1186/s12864-018-4457-8  0.48
2017 Zheng Y, Chen K, Xu Z, Liao P, Zhang X, Liu L, Wei K, Liu D, Li YF, Sunkar R, Cui X. Small RNA profiles from Panax notoginseng roots differing in sizes reveal correlation between miR156 abundances and root biomass levels. Scientific Reports. 7: 9418. PMID 28842680 DOI: 10.1038/s41598-017-09670-8  0.48
2017 Li G, Jagadeeswaran G, Mort A, Sunkar R. ChIP-Seq Analysis for Identifying Genome-Wide Histone Modifications Associated with Stress-Responsive Genes in Plants. Methods in Molecular Biology (Clifton, N.J.). 1631: 139-149. PMID 28735395 DOI: 10.1007/978-1-4939-7136-7_8  0.44
2017 Ghorecha V, Zheng Y, Liu L, Sunkar R, Krishnayya NSR. MicroRNA dynamics in a wild and cultivated species of Convolvulaceae exposed to drought stress. Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 23: 291-300. PMID 28461718 DOI: 10.1007/s12298-017-0426-y  0.48
2017 Yaish MW, Patankar HV, Assaha DV, Zheng Y, Al-Yahyai R, Sunkar R. Genome-wide expression profiling in leaves and roots of date palm (Phoenix dactylifera L.) exposed to salinity. Bmc Genomics. 18: 246. PMID 28330456 DOI: 10.1186/s12864-017-3633-6  0.48
2016 Zheng Y, Hivrale V, Zhang X, Valliyodan B, Lelandais-Brière C, Farmer AD, May GD, Crespi M, Nguyen HT, Sunkar R. Small RNA profiles in soybean primary root tips under water deficit. Bmc Systems Biology. 10: 126. PMID 28105955 DOI: 10.1186/s12918-016-0374-0  0.48
2016 Hivrale V, Zheng Y, Puli CO, Jagadeeswaran G, Gowdu K, Kakani VG, Barakat A, Sunkar R. Characterization of drought- and heat-responsive microRNAs in switchgrass. Plant Science : An International Journal of Experimental Plant Biology. 242: 214-23. PMID 26566839 DOI: 10.1016/j.plantsci.2015.07.018  0.92
2015 Yaish MW, Sunkar R, Zheng Y, Ji B, Al-Yahyai R, Farooq SA. A genome-wide identification of the miRNAome in response to salinity stress in date palm (Phoenix dactylifera L.). Frontiers in Plant Science. 6: 946. PMID 26594218 DOI: 10.3389/fpls.2015.00946  0.92
2015 Ming R, VanBuren R, Wai CM, Tang H, Schatz MC, Bowers JE, Lyons E, Wang ML, Chen J, Biggers E, Zhang J, Huang L, Zhang L, Miao W, Zhang J, ... ... Sunkar R, et al. The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics. 47: 1435-42. PMID 26523774 DOI: 10.1038/ng.3435  0.48
2015 Formey D, Iñiguez LP, Peláez P, Li YF, Sunkar R, Sánchez F, Reyes JL, Hernández G. Genome-wide identification of the Phaseolus vulgaris sRNAome using small RNA and degradome sequencing. Bmc Genomics. 16: 423. PMID 26059339 DOI: 10.1186/s12864-015-1639-5  0.92
2015 Panda SK, Sunkar R. Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling. Plant Signaling & Behavior. 10: e1010916. PMID 25912823 DOI: 10.1080/15592324.2015.1010916  0.92
2015 Srivastava S, Zheng Y, Kudapa H, Jagadeeswaran G, Hivrale V, Varshney RK, Sunkar R. High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea. Plant Science : An International Journal of Experimental Plant Biology. 235: 46-57. PMID 25900565 DOI: 10.1016/j.plantsci.2015.03.002  0.48
2014 Bredeson S, Papaconstantinou J, Deford JH, Kechichian T, Syed TA, Saade GR, Menon R. HMGB1 promotes a p38MAPK associated non-infectious inflammatory response pathway in human fetal membranes. Plos One. 9: e113799. PMID 25469638 DOI: 10.1371/journal.pone.0113799  0.92
2014 Zheng Y, Wang S, Sunkar R. Genome-wide discovery and analysis of phased small interfering RNAs in Chinese sacred lotus. Plos One. 9: e113790. PMID 25469507 DOI: 10.1371/journal.pone.0113790  0.92
2014 Ghorecha V, Patel K, Ingle S, Sunkar R, Krishnayya NS. Analysis of biochemical variations and microRNA expression in wild ( Ipomoea campanulata ) and cultivated ( Jacquemontia pentantha ) species exposed to in vivo water stress. Physiology and Molecular Biology of Plants : An International Journal of Functional Plant Biology. 20: 57-67. PMID 24554839 DOI: 10.1007/s12298-013-0207-1  0.92
2014 Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, Jiang H. Identification of conserved and novel microRNAs in Manduca sexta and their possible roles in the expression regulation of immunity-related genes. Insect Biochemistry and Molecular Biology. 47: 12-22. PMID 24508515 DOI: 10.1016/j.ibmb.2014.01.008  0.92
2014 Aryal R, Jagadeeswaran G, Zheng Y, Yu Q, Sunkar R, Ming R. Sex specific expression and distribution of small RNAs in papaya. Bmc Genomics. 15: 20. PMID 24410969 DOI: 10.1186/1471-2164-15-20  0.92
2014 Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T. Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant. Journal of Experimental Botany. 65: 725-39. PMID 24376253 DOI: 10.1093/jxb/ert428  0.92
2014 Jagadeeswaran G, Li YF, Sunkar R. Redox signaling mediates the expression of a sulfate-deprivation-inducible microRNA395 in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 77: 85-96. PMID 24164591 DOI: 10.1111/tpj.12364  0.92
2013 Ming R, VanBuren R, Liu Y, Yang M, Han Y, Li LT, Zhang Q, Kim MJ, Schatz MC, Campbell M, Li J, Bowers JE, Tang H, Lyons E, Ferguson AA, ... ... Sunkar R, et al. Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biology. 14: R41. PMID 23663246 DOI: 10.1186/gb-2013-14-5-r41  0.48
2013 Li YF, Zheng Y, Jagadeeswaran G, Sunkar R. Characterization of small RNAs and their target genes in wheat seedlings using sequencing-based approaches. Plant Science : An International Journal of Experimental Plant Biology. 203: 17-24. PMID 23415324 DOI: 10.1016/j.plantsci.2012.12.014  0.92
2013 Li YF, Sunkar R. Global identification of small RNA targets in plants by sequencing sliced ends of messenger RNAs. Methods in Molecular Biology (Clifton, N.J.). 956: 119-29. PMID 23135849 DOI: 10.1007/978-1-62703-194-3_10  0.92
2013 Jagadeeswaran G, Sunkar R. Cloning of small RNAs for the discovery of novel microRNAs in plants. Methods in Molecular Biology (Clifton, N.J.). 956: 109-18. PMID 23135848 DOI: 10.1007/978-1-62703-194-3_9  0.92
2013 Zheng Y, Jagadeeswaran G, Gowdu K, Wang N, Li S, Ming R, Sunkar R. Genome-Wide Analysis of MicroRNAs in Sacred Lotus, Nelumbo nucifera (Gaertn) Tropical Plant Biology. 6: 117-130. DOI: 10.1007/s12042-013-9127-z  0.92
2013 Manohar S, Jagadeeswaran G, Nimmakayala P, Tomason Y, Almeida A, Sunkar R, Levi A, Reddy UK. Dynamic Regulation of Novel and Conserved miRNAs Across Various Tissues of Diverse Cucurbit Species Plant Molecular Biology Reporter. 31: 335-343. DOI: 10.1007/s11105-012-0506-7  0.92
2012 Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R. Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya. Bmc Genomics. 13: 682. PMID 23216749 DOI: 10.1186/1471-2164-13-682  0.92
2012 Sattar S, Addo-Quaye C, Song Y, Anstead JA, Sunkar R, Thompson GA. Expression of small RNA in Aphis gossypii and its potential role in the resistance interaction with melon. Plos One. 7: e48579. PMID 23173035 DOI: 10.1371/journal.pone.0048579  0.92
2012 Alabi OJ, Zheng Y, Jagadeeswaran G, Sunkar R, Naidu RA. High-throughput sequence analysis of small RNAs in grapevine (Vitis vinifera L.) affected by grapevine leafroll disease. Molecular Plant Pathology. 13: 1060-76. PMID 22827483 DOI: 10.1111/j.1364-3703.2012.00815.x  0.92
2012 Jagadeeswaran G, Nimmakayala P, Zheng Y, Gowdu K, Reddy UK, Sunkar R. Characterization of the small RNA component of leaves and fruits from four different cucurbit species. Bmc Genomics. 13: 329. PMID 22823569 DOI: 10.1186/1471-2164-13-329  0.92
2012 Iyer NJ, Jia X, Sunkar R, Tang G, Mahalingam R. microRNAs responsive to ozone-induced oxidative stress in Arabidopsis thaliana. Plant Signaling & Behavior. 7: 484-91. PMID 22499183 DOI: 10.4161/psb.19337  0.92
2012 Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, Jiang H. Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta. Insect Biochemistry and Molecular Biology. 42: 381-95. PMID 22406339 DOI: 10.1016/j.ibmb.2012.01.006  0.92
2012 Sattar S, Song Y, Anstead JA, Sunkar R, Thompson GA. Cucumis melo microRNA expression profile during aphid herbivory in a resistant and susceptible interaction. Molecular Plant-Microbe Interactions : Mpmi. 25: 839-48. PMID 22375710 DOI: 10.1094/MPMI-09-11-0252  0.92
2012 Sunkar R, Li YF, Jagadeeswaran G. Functions of microRNAs in plant stress responses. Trends in Plant Science. 17: 196-203. PMID 22365280 DOI: 10.1016/j.tplants.2012.01.010  0.92
2012 Fu C, Sunkar R, Zhou C, Shen H, Zhang JY, Matts J, Wolf J, Mann DG, Stewart CN, Tang Y, Wang ZY. Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production. Plant Biotechnology Journal. 10: 443-52. PMID 22239253 DOI: 10.1111/j.1467-7652.2011.00677.x  0.92
2012 Zheng Y, Li YF, Sunkar R, Zhang W. SeqTar: an effective method for identifying microRNA guided cleavage sites from degradome of polyadenylated transcripts in plants. Nucleic Acids Research. 40: e28. PMID 22140118 DOI: 10.1093/nar/gkr1092  0.92
2012 Clarke SL, Davis MR, Sunkar R. Biogenesis of mammalian miRNA Micrornas as Tools in Biopharmaceutical Production. 2147483647: 15-27. DOI: 10.1007/978-94-007-5128-6_2  0.92
2011 Zhang L, Zheng Y, Jagadeeswaran G, Li Y, Gowdu K, Sunkar R. Identification and temporal expression analysis of conserved and novel microRNAs in Sorghum. Genomics. 98: 460-8. PMID 21907786 DOI: 10.1016/j.ygeno.2011.08.005  0.92
2010 Sunkar R. MicroRNAs with macro-effects on plant stress responses. Seminars in Cell & Developmental Biology. 21: 805-11. PMID 20398781 DOI: 10.1016/j.semcdb.2010.04.001  0.92
2010 Reyes JL, Arenas-Huertero C, Sunkar R. Cloning of stress-responsive microRNAs and other small RNAs from plants. Methods in Molecular Biology (Clifton, N.J.). 639: 239-51. PMID 20387050 DOI: 10.1007/978-1-60761-702-0_14  0.92
2010 Sreenivasulu N, Sunkar R, Wobus U, Strickert M. Array platforms and bioinformatics tools for the analysis of plant transcriptome in response to abiotic stress. Methods in Molecular Biology (Clifton, N.J.). 639: 71-93. PMID 20387041 DOI: 10.1007/978-1-60761-702-0_5  0.92
2010 Chinnusamy V, Zhu JK, Sunkar R. Gene regulation during cold stress acclimation in plants. Methods in Molecular Biology (Clifton, N.J.). 639: 39-55. PMID 20387039 DOI: 10.1007/978-1-60761-702-0_3  0.92
2010 Yao Y, Ni Z, Peng H, Sun F, Xin M, Sunkar R, Zhu JK, Sun Q. Non-coding small RNAs responsive to abiotic stress in wheat (Triticum aestivum L.). Functional & Integrative Genomics. 10: 187-90. PMID 20217168 DOI: 10.1007/s10142-010-0163-6  0.92
2010 Matts J, Jagadeeswaran G, Roe BA, Sunkar R. Identification of microRNAs and their targets in switchgrass, a model biofuel plant species. Journal of Plant Physiology. 167: 896-904. PMID 20207044 DOI: 10.1016/j.jplph.2010.02.001  0.92
2010 Li YF, Zheng Y, Addo-Quaye C, Zhang L, Saini A, Jagadeeswaran G, Axtell MJ, Zhang W, Sunkar R. Transcriptome-wide identification of microRNA targets in rice. The Plant Journal : For Cell and Molecular Biology. 62: 742-59. PMID 20202174 DOI: 10.1111/j.1365-313X.2010.04187.x  0.92
2010 Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R. Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development. Bmc Genomics. 11: 52. PMID 20089182 DOI: 10.1186/1471-2164-11-52  0.92
2009 Addo-Quaye C, Snyder JA, Park YB, Li YF, Sunkar R, Axtell MJ. Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome. Rna (New York, N.Y.). 15: 2112-21. PMID 19850910 DOI: 10.1261/rna.1774909  0.92
2009 Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, MacMil SL, Wiley GB, Roe BA, Zhang W, Sunkar R. Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families New Phytologist. 184: 85-98. PMID 19555436 DOI: 10.1111/j.1469-8137.2009.02915.x  0.92
2009 Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R. Cloning, characterization and expression analysis of porcine microRNAs. Bmc Genomics. 10: 65. PMID 19196471 DOI: 10.1186/1471-2164-10-65  0.92
2009 Jagadeeswaran G, Saini A, Sunkar R. Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis. Planta. 229: 1009-14. PMID 19148671 DOI: 10.1007/s00425-009-0889-3  0.92
2009 Zhou X, Sunkar R, Jin H, Zhu JK, Zhang W. Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa. Genome Research. 19: 70-8. PMID 18971307 DOI: 10.1101/gr.084806.108  0.92
2008 Shukla LI, Chinnusamy V, Sunkar R. The role of microRNAs and other endogenous small RNAs in plant stress responses. Biochimica Et Biophysica Acta. 1779: 743-8. PMID 18457682 DOI: 10.1016/j.bbagrm.2008.04.004  0.92
2008 Sunkar R, Jagadeeswaran G. In silico identification of conserved microRNAs in large number of diverse plant species. Bmc Plant Biology. 8: 37. PMID 18416839 DOI: 10.1186/1471-2229-8-37  0.92
2008 Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O. Novel and nodulation-regulated microRNAs in soybean roots. Bmc Genomics. 9: 160. PMID 18402695 DOI: 10.1186/1471-2164-9-160  0.92
2008 Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK. Identification of novel and candidate miRNAs in rice by high throughput sequencing. Bmc Plant Biology. 8: 25. PMID 18312648 DOI: 10.1186/1471-2229-8-25  0.92
2007 Sunkar R, Chinnusamy V, Zhu J, Zhu JK. Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends in Plant Science. 12: 301-9. PMID 17573231 DOI: 10.1016/j.tplants.2007.05.001  0.92
2007 Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q. Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). Genome Biology. 8: R96. PMID 17543110 DOI: 10.1186/gb-2007-8-6-r96  0.92
2007 Sunkar R, Zhu JK. Micro RNAs and short-interfering RNAs in plants Journal of Integrative Plant Biology. 49: 817-826. DOI: 10.1111/j.1744-7909.2007.00499.x  0.92
2006 Sunkar R, Kapoor A, Zhu JK. Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. The Plant Cell. 18: 2051-65. PMID 16861386 DOI: 10.1105/tpc.106.041673  0.92
2005 Borsani O, Zhu J, Verslues PE, Sunkar R, Zhu JK. Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell. 123: 1279-91. PMID 16377568 DOI: 10.1016/j.cell.2005.11.035  0.92
2005 Sunkar R, Girke T, Zhu JK. Identification and characterization of endogenous small interfering RNAs from rice. Nucleic Acids Research. 33: 4443-54. PMID 16077027 DOI: 10.1093/nar/gki758  0.92
2005 Kirch HH, Schlingensiepen S, Kotchoni S, Sunkar R, Bartels D. Detailed expression analysis of selected genes of the aldehyde dehydrogenase (ALDH) gene superfamily in Arabidopsis thaliana. Plant Molecular Biology. 57: 315-32. PMID 15830124 DOI: 10.1007/s11103-004-7796-6  0.92
2005 Sunkar R, Girke T, Jain PK, Zhu JK. Cloning and characterization of microRNAs from rice. The Plant Cell. 17: 1397-411. PMID 15805478 DOI: 10.1105/tpc.105.031682  0.92
2005 Bartels D, Sunkar R. Drought and salt tolerance in plants Critical Reviews in Plant Sciences. 24: 23-58. DOI: 10.1080/07352680590910410  0.92
2004 Sunkar R, Zhu JK. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. The Plant Cell. 16: 2001-19. PMID 15258262 DOI: 10.1105/tpc.104.022830  0.92
2003 Sunkar R, Bartels D, Kirch HH. Overexpression of a stress-inducible aldehyde dehydrogenase gene from Arabidopsis thaliana in transgenic plants improves stress tolerance. The Plant Journal : For Cell and Molecular Biology. 35: 452-64. PMID 12904208 DOI: 10.1046/j.1365-313X.2003.01819.x  0.92
2000 Sunkar R, Kaplan B, Bouché N, Arazi T, Dolev D, Talke IN, Maathuis FJM, Sanders D, Bouchez D, Fromm H. Expression of a truncated tobacco NtCBP4 channel in transgenic plants and disruption of the homologous Arabidopsis CNGC1 gene confer Pb2+ tolerance Plant Journal. 24: 533-542. PMID 11115134 DOI: 10.1046/j.1365-313X.2000.00901.x  0.92
2000 Arazi T, Kaplan B, Sunkar R, Fromm H. Cyclic-nucleotide- and Ca2+/calmodulin-regulated channels in plants: Targets for manipulating heavy-metal tolerance, and possible physiological roles Biochemical Society Transactions. 28: 471-475. PMID 10961942  0.92
1999 Arazi T, Sunkar R, Kaplan B, Fromm H. A tobacco plasma membrane calmodulin-binding transporter confers Ni2+ tolerance and Pb2+ hypersensitivity in transgenic plants Plant Journal. 20: 171-182. PMID 10571877 DOI: 10.1046/j.1365-313X.1999.00588.x  0.92
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