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Honggao Yan - Publications

Affiliations: 
Biochemistry and Molecular Biology Michigan State University, East Lansing, MI 
Area:
Biochemistry

54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Jia Z, Huang X, Wu H, Zhang T, Li N, Ding P, Sun Y, Liu Z, Wei F, Zhang H, Jiao Y, Ji Y, Zhang Y, Guo C, Li W, ... ... Yan H, et al. HIV burden in men who have sex with men: a prospective cohort study 2007-2012. Scientific Reports. 5: 11205. PMID 26135810 DOI: 10.1038/srep11205  0.36
2015 Banerjee R, Yan H, Cukier RI. Conformational transition in signal transduction: metastable States and transition pathways in the activation of a signaling protein. The Journal of Physical Chemistry. B. 119: 6591-602. PMID 25945797 DOI: 10.1021/acs.jpcb.5b02582  0.36
2015 Achila D, Liu A, Banerjee R, Li Y, Martinez-Hackert E, Zhang JR, Yan H. Structural determinants of host specificity of complement Factor H recruitment by Streptococcus pneumoniae. The Biochemical Journal. 465: 325-35. PMID 25330773 DOI: 10.1042/BJ20141069  0.36
2014 Blaszczyk J, Lu Z, Li Y, Yan H, Ji X. Crystallographic and molecular dynamics simulation analysis of Escherichia coli dihydroneopterin aldolase. Cell & Bioscience. 4: 52. PMID 25264482 DOI: 10.1186/2045-3701-4-52  0.36
2014 Shaw GX, Li Y, Shi G, Wu Y, Cherry S, Needle D, Zhang D, Tropea JE, Waugh DS, Yan H, Ji X. Structural enzymology and inhibition of the bi-functional folate pathway enzyme HPPK-DHPS from the biowarfare agent Francisella┬átularensis. The Febs Journal. 281: 4123-37. PMID 24975935 DOI: 10.1111/febs.12896  0.36
2014 Banerjee R, Yan H, Cukier RI. Conformational transition of response regulator RR468 in a two-component system signal transduction process. The Journal of Physical Chemistry. B. 118: 4727-42. PMID 24731214 DOI: 10.1021/jp4122968  0.36
2014 Chen B, Himes P, Liu Y, Zhang Y, Lu Z, Liu A, Yan H, Kroos L. Structure of bacterial transcription factor SpoIIID and evidence for a novel mode of DNA binding. Journal of Bacteriology. 196: 2131-42. PMID 24584501 DOI: 10.1128/JB.01486-13  0.36
2013 Li M, Cheng R, Liang J, Yan H, Zhang H, Yang L, Li C, Jiao Q, Lu Z, He J, Ji J, Shen Z, Li C, Hao F, Yu H, et al. Mutations in POFUT1, encoding protein O-fucosyltransferase 1, cause generalized Dowling-Degos disease. American Journal of Human Genetics. 92: 895-903. PMID 23684010 DOI: 10.1016/j.ajhg.2013.04.022  0.36
2013 Banerjee A, Wu Y, Banerjee R, Li Y, Yan H, Sharkey TD. Feedback inhibition of deoxy-D-xylulose-5-phosphate synthase regulates the methylerythritol 4-phosphate pathway. The Journal of Biological Chemistry. 288: 16926-36. PMID 23612965 DOI: 10.1074/jbc.M113.464636  0.36
2012 Zhang R, Zhu L, Lu Z, Yan H, Bregadze VI. Reactivity of 16-electron half-sandwich cobalt compounds containing a chelating 1,2-dicarba-closo-dodecaborane-1,2-dithiolate ligand towards methyl propiolate and dithio ligands. Dalton Transactions (Cambridge, England : 2003). 41: 12054-63. PMID 22911065 DOI: 10.1039/c2dt31425h  0.36
2012 Shi G, Shaw G, Li Y, Wu Y, Yan H, Ji X. Bisubstrate analog inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: new lead exhibits a distinct binding mode. Bioorganic & Medicinal Chemistry. 20: 4303-9. PMID 22727779 DOI: 10.1016/j.bmc.2012.05.060  0.36
2012 Zhang R, Zhu L, Liu G, Dai H, Lu Z, Zhao J, Yan H. Cobalt-promoted B-H and C-H activation: facile B-C coupling of carboranedithiolate and cyclopentadienyl. Journal of the American Chemical Society. 134: 10341-4. PMID 22703183 DOI: 10.1021/ja303334t  0.36
2012 Song Y, Zan J, Yan H, Lu ZL, Wang R. Steric effects on the catalytic activities of zinc(II) complexes containing [12]aneN3 ligating units in the cleavage of the RNA and DNA model phosphates. Organic & Biomolecular Chemistry. 10: 7714-20. PMID 22699360 DOI: 10.1039/c2ob25624j  0.4
2012 Wang J, Sklenak S, Liu A, Felczak K, Wu Y, Li Y, Yan H. Role of glutamate 64 in the activation of the prodrug 5-fluorocytosine by yeast cytosine deaminase. Biochemistry. 51: 475-86. PMID 22208667 DOI: 10.1021/bi201540z  0.36
2012 Shi G, Shaw G, Liang YH, Subburaman P, Li Y, Wu Y, Yan H, Ji X. Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: New design with improved properties. Bioorganic & Medicinal Chemistry. 20: 47-57. PMID 22169600 DOI: 10.1016/j.bmc.2011.11.032  0.36
2011 He Y, Li Y, Mukherjee S, Wu Y, Yan H, Lu HP. Probing single-molecule enzyme active-site conformational state intermittent coherence. Journal of the American Chemical Society. 133: 14389-95. PMID 21823644 DOI: 10.1021/ja204644y  0.36
2011 Xie GL, Yan H, Lu ZF. Inhibition of glucocorticoid-induced alteration of vimentin by a glucocorticoid receptor antagonist RU486 in the organ-cultured rat lens. Molecular Vision. 17: 32-40. PMID 21245955  0.32
2011 Yan H, Ji X. Role of protein conformational dynamics in the catalysis by 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase. Protein and Peptide Letters. 18: 328-35. PMID 21222642  0.36
2010 Xie GL, Yan H, Lu ZF. Inhibition of glucocorticoid-induced changes of Na(+), K(+)-ATPase in rat lens by a glucocorticoid receptor antagonist RU486. Experimental Eye Research. 91: 544-9. PMID 20637751 DOI: 10.1016/j.exer.2010.07.005  0.32
2009 Lu Z, Zhou L, Killela P, Rasheed AB, Di C, Poe WE, McLendon RE, Bigner DD, Nicchitta C, Yan H. Glioblastoma proto-oncogene SEC61gamma is required for tumor cell survival and response to endoplasmic reticulum stress. Cancer Research. 69: 9105-11. PMID 19920201 DOI: 10.1158/0008-5472.CAN-09-2775  0.36
2009 Zavodszky MI, Rohatgi A, Van Voorst JR, Yan H, Kuhn LA. Scoring ligand similarity in structure-based virtual screening. Journal of Molecular Recognition : Jmr. 22: 280-92. PMID 19235177 DOI: 10.1002/jmr.942  0.36
2009 Krishnamurthy H, Munro K, Yan H, Vieille C. Dynamics in Thermotoga neapolitana adenylate kinase: 15N relaxation and hydrogen-deuterium exchange studies of a hyperthermophilic enzyme highly active at 30 degrees C. Biochemistry. 48: 2723-39. PMID 19220019 DOI: 10.1021/bi802001w  0.36
2009 Lescop E, Lu Z, Liu Q, Xu H, Li G, Xia B, Yan H, Jin C. Dynamics of the conformational transitions in the assembling of the Michaelis complex of a bisubstrate enzyme: a (15)N relaxation study of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase. Biochemistry. 48: 302-12. PMID 19108643 DOI: 10.1021/bi8016262  0.36
2008 Liu A, Wang J, Lu Z, Yao L, Li Y, Yan H. Hydrogen-bond detection, configuration assignment and rotamer correction of side-chain amides in large proteins by NMR spectroscopy through protium/deuterium isotope effects. Chembiochem : a European Journal of Chemical Biology. 9: 2860-71. PMID 18973166 DOI: 10.1002/cbic.200800467  0.36
2008 Liu A, Lu Z, Wang J, Yao L, Li Y, Yan H. NMR detection of bifurcated hydrogen bonds in large proteins. Journal of the American Chemical Society. 130: 2428-9. PMID 18247612 DOI: 10.1021/ja710114r  0.36
2007 Blaszczyk J, Li Y, Cherry S, Alexandratos J, Wu Y, Shaw G, Tropea JE, Waugh DS, Yan H, Ji X. Structure and activity of Yersinia pestis 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase as a novel target for the development of antiplague therapeutics. Acta Crystallographica. Section D, Biological Crystallography. 63: 1169-77. PMID 18007032 DOI: 10.1107/S0907444907047452  0.36
2007 Gan J, Wu Y, Prabakaran P, Gu Y, Li Y, Andrykovitch M, Liu H, Gong Y, Yan H, Ji X. Structural and biochemical analyses of shikimate dehydrogenase AroE from Aquifex aeolicus: implications for the catalytic mechanism. Biochemistry. 46: 9513-22. PMID 17649975 DOI: 10.1021/bi602601e  0.36
2007 Yao L, Cukier RI, Yan H. Catalytic mechanism of guanine deaminase: an ONIOM and molecular dynamics study. The Journal of Physical Chemistry. B. 111: 4200-10. PMID 17394305 DOI: 10.1021/jp0673056  0.36
2007 Wang Y, Li Y, Wu Y, Yan H. Mechanism of dihydroneopterin aldolase. NMR, equilibrium and transient kinetic studies of the Staphylococcus aureus and Escherichia coli enzymes. The Febs Journal. 274: 2240-52. PMID 17388809 DOI: 10.1111/j.1742-4658.2007.05761.x  0.36
2007 Liu A, Yao L, Li Y, Yan H. TROSY of side-chain amides in large proteins. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 186: 319-26. PMID 17347000 DOI: 10.1016/j.jmr.2007.02.008  0.36
2007 Blaszczyk J, Li Y, Gan J, Yan H, Ji X. Structural basis for the aldolase and epimerase activities of Staphylococcus aureus dihydroneopterin aldolase. Journal of Molecular Biology. 368: 161-9. PMID 17331536 DOI: 10.1016/j.jmb.2007.02.009  0.36
2007 Yao L, Yan H, Cukier RI. A molecular dynamics study of the ligand release path in yeast cytosine deaminase. Biophysical Journal. 92: 2301-10. PMID 17218460 DOI: 10.1529/biophysj.106.098921  0.36
2006 Yao L, Yan H, Cukier RI. A combined ONIOM quantum chemical-molecular dynamics study of zinc-uracil bond breaking in yeast cytosine deaminase. The Journal of Physical Chemistry. B. 110: 26320-6. PMID 17181291 DOI: 10.1021/jp064301s  0.36
2006 Wang Y, Li Y, Yan H. Mechanism of dihydroneopterin aldolase: functional roles of the conserved active site glutamate and lysine residues. Biochemistry. 45: 15232-9. PMID 17176045 DOI: 10.1021/bi060949j  0.36
2006 Liu A, Li Y, Yao L, Yan H. Simultaneous NMR assignment of backbone and side chain amides in large proteins with IS-TROSY. Journal of Biomolecular Nmr. 36: 205-14. PMID 17091334 DOI: 10.1007/s10858-006-9072-3  0.36
2006 Wang Y, Scherperel G, Roberts KD, Jones AD, Reid GE, Yan H. A point mutation converts dihydroneopterin aldolase to a cofactor-independent oxygenase. Journal of the American Chemical Society. 128: 13216-23. PMID 17017801 DOI: 10.1021/ja063455i  0.36
2006 Gan J, Gu Y, Li Y, Yan H, Ji X. Crystal structure of Mycobacterium tuberculosis shikimate kinase in complex with shikimic acid and an ATP analogue. Biochemistry. 45: 8539-45. PMID 16834327 DOI: 10.1021/bi0606290  0.36
2006 Yao L, Yan H, Cukier RI. Mechanism of dihydroneopterin aldolase: a molecular dynamics study of the apo enzyme and its product complex. The Journal of Physical Chemistry. B. 110: 1443-56. PMID 16471696 DOI: 10.1021/jp054854n  0.36
2006 Kim C, Cha JY, Yan H, Vakulenko SB, Mobashery S. Hydrolysis of ATP by aminoglycoside 3'-phosphotransferases: an unexpected cost to bacteria for harboring an antibiotic resistance enzyme. The Journal of Biological Chemistry. 281: 6964-9. PMID 16407230 DOI: 10.1074/jbc.M513257200  0.36
2005 Yao L, Sklenak S, Yan H, Cukier RI. A molecular dynamics exploration of the catalytic mechanism of yeast cytosine deaminase. The Journal of Physical Chemistry. B. 109: 7500-10. PMID 16851861 DOI: 10.1021/jp044828+  0.36
2005 Li Y, Blaszczyk J, Wu Y, Shi G, Ji X, Yan H. Is the critical role of loop 3 of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase in catalysis due to loop-3 residues arginine-84 and tryptophan-89? Site-directed mutagenesis, biochemical, and crystallographic studies. Biochemistry. 44: 8590-9. PMID 15952765 DOI: 10.1021/bi0503495  0.36
2005 Yao L, Li Y, Wu Y, Liu A, Yan H. Product release is rate-limiting in the activation of the prodrug 5-fluorocytosine by yeast cytosine deaminase. Biochemistry. 44: 5940-7. PMID 15823054 DOI: 10.1021/bi050095n  0.36
2004 Sklenak S, Yao L, Cukier RI, Yan H. Catalytic mechanism of yeast cytosine deaminase: an ONIOM computational study. Journal of the American Chemical Society. 126: 14879-89. PMID 15535715 DOI: 10.1021/ja046462k  0.36
2004 Blaszczyk J, Shi G, Li Y, Yan H, Ji X. Reaction trajectory of pyrophosphoryl transfer catalyzed by 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase. Structure (London, England : 1993). 12: 467-75. PMID 15016362 DOI: 10.1016/j.str.2004.02.003  0.36
2004 Kim C, Haddad J, Vakulenko SB, Meroueh SO, Wu Y, Yan H, Mobashery S. Fluorinated aminoglycosides and their mechanistic implication for aminoglycoside 3'-phosphotransferases from Gram-negative bacteria. Biochemistry. 43: 2373-83. PMID 14992574 DOI: 10.1021/bi036095+  0.36
2004 Blaszczyk J, Li Y, Wu Y, Shi G, Ji X, Yan H. Essential roles of a dynamic loop in the catalysis of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase. Biochemistry. 43: 1469-77. PMID 14769023 DOI: 10.1021/bi036053l  0.36
2003 Zhang C, Yan H, Burton ZF. Combinatorial control of human RNA polymerase II (RNAP II) pausing and transcript cleavage by transcription factor IIF, hepatitis delta antigen, and stimulatory factor II. The Journal of Biological Chemistry. 278: 50101-11. PMID 14506279 DOI: 10.1074/jbc.M307590200  0.36
2003 Nedialkov YA, Gong XQ, Hovde SL, Yamaguchi Y, Handa H, Geiger JH, Yan H, Burton ZF. NTP-driven translocation by human RNA polymerase II. The Journal of Biological Chemistry. 278: 18303-12. PMID 12637520 DOI: 10.1074/jbc.M301103200  0.36
2003 Vieille C, Krishnamurthy H, Hyun HH, Savchenko A, Yan H, Zeikus JG. Thermotoga neapolitana adenylate kinase is highly active at 30 degrees C. The Biochemical Journal. 372: 577-85. PMID 12625835 DOI: 10.1042/BJ20021377  0.36
2003 Li Y, Wu Y, Blaszczyk J, Ji X, Yan H. Catalytic roles of arginine residues 82 and 92 of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: site-directed mutagenesis and biochemical studies. Biochemistry. 42: 1581-8. PMID 12578371 DOI: 10.1021/bi026800z  0.36
2003 Blaszczyk J, Li Y, Shi G, Yan H, Ji X. Dynamic roles of arginine residues 82 and 92 of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: crystallographic studies. Biochemistry. 42: 1573-80. PMID 12578370 DOI: 10.1021/bi0267994  0.36
2002 Li Y, Gong Y, Shi G, Blaszczyk J, Ji X, Yan H. Chemical transformation is not rate-limiting in the reaction catalyzed by Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase. Biochemistry. 41: 8777-83. PMID 12093297  0.36
2002 Gu Y, Reshetnikova L, Li Y, Wu Y, Yan H, Singh S, Ji X. Crystal structure of shikimate kinase from Mycobacterium tuberculosis reveals the dynamic role of the LID domain in catalysis. Journal of Molecular Biology. 319: 779-89. PMID 12054870 DOI: 10.1016/S0022-2836(02)00339-X  0.36
2002 Li W, Scott AP, Siefkes MJ, Yan H, Liu Q, Yun SS, Gage DA. Bile Acid secreted by male sea lamprey that acts as a sex pheromone. Science (New York, N.Y.). 296: 138-41. PMID 11935026 DOI: 10.1126/science.1067797  0.36
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