Year |
Citation |
Score |
2016 |
Kollipara S, Tatireddy S, Pathirathne T, Rathnayake LK, Northrup SH. Contribution of Electrostatics to the Kinetics of Electron Transfer from NADH-Cytochrome b5 Reductase to Fe(III)-Cytochrome b5. The Journal of Physical Chemistry. B. PMID 27059440 DOI: 10.1021/Acs.Jpcb.6B01726 |
0.44 |
|
2016 |
Rathnayake LK, Northrup SH. Structure and mode of action of organophosphate pesticides: A computational study Computational and Theoretical Chemistry. 1088: 9-23. DOI: 10.1016/J.Comptc.2016.04.024 |
0.351 |
|
2015 |
Murillo JD, Moffet M, Biernacki JJ, Northrup S. High-temperature molecular dynamics simulation of cellobiose and maltose Aiche Journal. 61: 2562-2570. DOI: 10.1002/Aic.14854 |
0.311 |
|
1998 |
Castro G, Boswell CA, Northrup SH. Dynamics of protein-protein docking: cytochrome c and cytochrome c peroxidase revisited. Journal of Biomolecular Structure & Dynamics. 16: 413-24. PMID 9833678 DOI: 10.1080/07391102.1998.10508257 |
0.477 |
|
1997 |
Thomasson KA, Ouporov IV, Baumgartner T, Czlapinski J, Kaldor T, Northrup SH. Free energy of nonspecific binding of cro represser protein to DNA Journal of Physical Chemistry B. 101: 9127-9136. DOI: 10.1021/Jp971924K |
0.381 |
|
1995 |
Mauk AG, Mauk MR, Moore GR, Northrup SH. Experimental and theoretical analysis of the interaction between cytochrome c and cytochrome b5. Journal of Bioenergetics and Biomembranes. 27: 311-30. PMID 8847345 DOI: 10.1007/Bf02110101 |
0.354 |
|
1994 |
Northrup SH. Hydrodynamic motions of large molecules Current Opinion in Structural Biology. 4: 269-274. DOI: 10.1016/S0959-440X(94)90319-0 |
0.395 |
|
1993 |
Andrew SM, Thomasson KA, Northrup SH. Simulation of electron-transfer self-exchange in cytochromes c and b5 Journal of the American Chemical Society. 115: 5516-5521. DOI: 10.1021/Ja00066A020 |
0.422 |
|
1992 |
Northrup SH, Erickson HP. Kinetics of protein-protein association explained by Brownian dynamics computer simulation. Proceedings of the National Academy of Sciences of the United States of America. 89: 3338-42. PMID 1565624 DOI: 10.1073/Pnas.89.8.3338 |
0.482 |
|
1991 |
Eltis LD, Herbert RG, Barker PD, Mauk AG, Northrup SH. Reduction of horse heart ferricytochrome c by bovine liver ferrocytochrome b5. Experimental and theoretical analysis. Biochemistry. 30: 3663-74. PMID 1849735 DOI: 10.1021/Bi00229A011 |
0.436 |
|
1990 |
Northrup SH, Wensel TG, Meares CF, Wendoloski JJ, Matthew JB. Electrostatic field around cytochrome c: theory and energy transfer experiment. Proceedings of the National Academy of Sciences of the United States of America. 87: 9503-7. PMID 2174564 DOI: 10.1073/Pnas.87.23.9503 |
0.484 |
|
1990 |
Reynolds JCL, Cooke KF, Northrup SH. Electrostatics and diffusional dynamics in the carbonic anhydrase active site channel Journal of Physical Chemistry. 94: 985-991. DOI: 10.1021/J100365A089 |
0.42 |
|
1990 |
Northrup SH, Herbert RG. Brownian simulation of protein association and reaction International Journal of Quantum Chemistry. 38: 55-71. DOI: 10.1002/Qua.560381709 |
0.514 |
|
1989 |
Herbert RG, Northrup SH. Brownian simulation of cytochrome c551 association and electron self-exchange Journal of Molecular Liquids. 41: 207-222. DOI: 10.1016/0167-7322(89)80079-0 |
0.447 |
|
1988 |
Northrup SH, Luton JA, Boles JO, Reynolds JC. Brownian dynamics simulation of protein association. Journal of Computer-Aided Molecular Design. 1: 291-311. PMID 2848101 DOI: 10.1007/Bf01677278 |
0.751 |
|
1988 |
Northrup SH, Boles JO, Reynolds JC. Brownian dynamics of cytochrome c and cytochrome c peroxidase association. Science (New York, N.Y.). 241: 67-70. PMID 2838904 DOI: 10.1126/Science.2838904 |
0.742 |
|
1988 |
Northrup SH. Diffusion-controlled ligand binding to multiple competing cell-bound receptors Journal of Physical Chemistry. 92: 5847-5850. DOI: 10.1021/J100331A060 |
0.342 |
|
1987 |
McCammon JA, Bacquet RJ, Allison SA, Northrup SH. Trajectory simulation studies of diffusion-controlled reactions. Faraday Discussions of the Chemical Society. 213-22. PMID 3440490 DOI: 10.1039/Dc9878300213 |
0.537 |
|
1987 |
Northrup SH, Boles JO, Reynolds JCL. Electrostatic effects in the Brownian Dynamics of association and orientation of heme proteins Journal of Physical Chemistry. 91: 5991-5998. DOI: 10.1021/J100307A036 |
0.746 |
|
1986 |
Allison SA, Northrup SH, McCammon JA. Simulation of biomolecular diffusion and complex formation. Biophysical Journal. 49: 167-75. PMID 3955168 DOI: 10.1016/S0006-3495(86)83632-3 |
0.567 |
|
1986 |
Northrup SH, Curvin MS, Allison SA, McCammon JA. Optimization of Brownian dynamics methods for diffusion‐influenced rate constant calculations The Journal of Chemical Physics. 84: 2196-2203. DOI: 10.1063/1.450381 |
0.533 |
|
1986 |
Northrup SH, Reynolds JCL, Miller CM, Forrest KJ, Boles JO. Correction. Diffusion-Controlled Association Rate of Cytochrome c and Cytochrome c Peroxidase in a Simple Electrostatic Model Journal of the American Chemical Society. 108: 8162-8170. DOI: 10.1021/Ja00244A600 |
0.373 |
|
1986 |
McCammon JA, Northrup SH, Allison SA. Diffusional dynamics of ligand-receptor association The Journal of Physical Chemistry. 90: 3901-3905. DOI: 10.1021/J100408A015 |
0.43 |
|
1986 |
Northrup SH, Reynolds JCL, Miller CM, Forrest KJ, Boles JO. Diffusion-controlled association rate of cytochrome c and cytochrome c peroxidase in a simple electrostatic model Journal of the American Chemical Society. 108: 8162-8170. |
0.752 |
|
1985 |
Northrup SH, Smith JD, Boles JO, Reynolds JCL. The effect of dipole moment on diffusion controlled bimolecular reaction rates The Journal of Chemical Physics. 84: 5536-5544. DOI: 10.1063/1.449911 |
0.755 |
|
1985 |
Allison SA, Northrup SH, McCammon JA. Extended Brownian dynamics of diffusion controlled reactions The Journal of Chemical Physics. 83: 2894-2899. DOI: 10.1063/1.449242 |
0.466 |
|
1985 |
Allison SA, Northrup SH, McCammon JA. Extended Brownian dynamics of diffusion controlled reactions The Journal of Chemical Physics. 83: 2894-2899. DOI: 10.1063/1.449242 |
0.436 |
|
1985 |
Northrup SH, Curvin MS. Molecular dynamics simulation of disorder transitions in lipid monolayers Journal of Physical Chemistry. 89: 4707-4713. DOI: 10.1021/J100268A013 |
0.357 |
|
1985 |
Northrup SH, Curvin MS, Allison SA, Andrew McCammon J. Optimization of Brownian dynamics methods for diffusion-influenced rate constant calculations The Journal of Chemical Physics. 84: 2196-2203. |
0.324 |
|
1984 |
Northrup SH, Allison SA, McCammon JA. Brownian dynamics simulation of diffusion‐influenced bimolecular reactions The Journal of Chemical Physics. 80: 1517-1524. DOI: 10.1063/1.446900 |
0.547 |
|
1984 |
Allison SA, Srinivasan N, McCammon JA, Northrup SH. Diffusion-controlled reactions between a spherical target and dumbbell dimer by Brownian dynamics simulation The Journal of Physical Chemistry. 88: 6152-6157. DOI: 10.1021/j150669a019 |
0.468 |
|
1984 |
Allison SA, Srinivasan N, McCammon JA, Northrup SH. Diffusion-controlled reactions between a spherical target and dumbell dimer by Brownian dynamics simulation Journal of Physical Chemistry. 88: 6152-6157. DOI: 10.1021/J150669A019 |
0.411 |
|
1984 |
Allison SA, McCammon JA, Northrup SH. DYNAMICS OF MACROMOLECULAR INTERACTIONS Polymeric Materials Science and Engineering, Proceedings of the Acs Division of Polymeric Material. 51: 538. |
0.328 |
|
1983 |
Berkowitz M, Morgan JD, McCammon JA, Northrup SH. Diffusion‐controlled reactions: A variational formula for the optimum reaction coordinate The Journal of Chemical Physics. 79: 5563-5565. DOI: 10.1063/1.445675 |
0.474 |
|
1983 |
Northrup SH, McCammon JA. Saddle‐point avoidance in diffusional reactions The Journal of Chemical Physics. 78: 987-989. DOI: 10.1063/1.444804 |
0.455 |
|
1983 |
McCammon JA, Lee CY, Northrup SH. SIDE-CHAIN ROTATIONAL ISOMERIZATION IN PROTEINS: A MECHANISM INVOLVING GATING AND TRANSIENT PACKING DEFECTS Journal of the American Chemical Society. 105: 2232-2237. DOI: 10.1021/Ja00346A022 |
0.415 |
|
1983 |
McCammon JA, Lee CY, Northrup SH. Side-chain rotational isomerization in proteins: a mechanism involving gating and transient packing defects Journal of the American Chemical Society. 105: 2232-2237. DOI: 10.1021/ja00346a022 |
0.399 |
|
1983 |
MCCAMMON JA, LEE CY, NORTHRUP SH. ChemInform Abstract: SIDE-CHAIN ROTATIONAL ISOMERIZATION IN PROTEINS: A MECHANISM INVOLVING GATING AND TRANSIENT PACKING DEFECTS Chemischer Informationsdienst. 14. DOI: 10.1002/chin.198331081 |
0.402 |
|
1983 |
Morgan JD, Andrew McCammon J, Northrup SH. Molecular dynamics of ferrocytochrome c: Time dependence of the atomic displacements Biopolymers. 22: 1579-1593. DOI: 10.1002/Bip.360220611 |
0.374 |
|
1983 |
Northrup SH, Allison SA, Andrew McCammon J. Brownian dynamics simulation of diffusion-influenced bimolecular reactions The Journal of Chemical Physics. 80: 1517-1524. |
0.342 |
|
1982 |
Northrup SH, Pear MR, Lee CY, McCammon JA, Karplus M. Dynamical theory of activated processes in globular proteins. Proceedings of the National Academy of Sciences of the United States of America. 79: 4035-9. PMID 6955788 DOI: 10.1073/Pnas.79.13.4035 |
0.633 |
|
1982 |
Mao B, Pear MR, McCammon JA, Northrup SH. Molecular dynamics of ferrocytochrome c: anharmonicity of atomic displacements. Biopolymers. 21: 1979-89. PMID 6293599 DOI: 10.1002/Bip.360211005 |
0.483 |
|
1982 |
Szabo A, Shoup D, Northrup SH, McCammon JA. Stochastically gated diffusion‐influenced reactions Journal of Chemical Physics. 77: 4484-4493. DOI: 10.1063/1.444397 |
0.524 |
|
1982 |
Northrup SH, Zarrin F, McCammon JA. Rate theory for gated diffusion-influenced ligand binding to proteins The Journal of Physical Chemistry. 86: 2314-2321. DOI: 10.1021/J100210A014 |
0.499 |
|
1982 |
Northrup SH, Zarrin F, McCammon JA. Rate theory for gated diffusion-influenced ligand binding to proteins Journal of Physical Chemistry. 86: 2314-2321. |
0.365 |
|
1982 |
Szabo A, Shoup D, Northrup SH, McCammon JA. Stochastically gated diffusion-influenced reactions The Journal of Chemical Physics. 77: 4484-4493. |
0.309 |
|
1981 |
McCammon JA, Northrup SH. Gated binding of ligands to proteins. Nature. 293: 316-7. PMID 7278989 DOI: 10.1038/293316A0 |
0.55 |
|
1981 |
Northrup SH, Pear MR, Morgan JD, McCammon JA, Karplus M. Molecular dynamics of ferrocytochrome c. Magnitude and anisotropy of atomic displacements. Journal of Molecular Biology. 153: 1087-109. PMID 6283085 DOI: 10.1016/0022-2836(81)90469-1 |
0.587 |
|
1981 |
Mao B, Pear MR, McCammon JA, Northrup SH. Repulsive interactions between polar and apolar atoms in globular proteins. Journal of Molecular Biology. 151: 199-202. PMID 6276560 DOI: 10.1016/0022-2836(81)90228-X |
0.498 |
|
1981 |
Pear MR, Northrup SH, McCammon JA, Karplus M, Levy RM. Correlated helix-coil transitions in polypeptides Biopolymers. 20: 629-632. DOI: 10.1002/Bip.1981.360200314 |
0.498 |
|
1980 |
Northrup SH, McCammon JA. Simulation methods for protein structure fluctuations. Biopolymers. 19: 1001-16. PMID 7378544 DOI: 10.1002/Bip.1980.360190506 |
0.497 |
|
1980 |
Northrup SH, Pear MR, McCammon JA, Karplus M, Takano T. Internal mobility of ferrocytochrome c. Nature. 287: 659-60. PMID 6253809 DOI: 10.1038/287659A0 |
0.583 |
|
1980 |
Northrup SH, Pear MR, McCammon JA, Karplus M. Molecular dynamics of ferrocytochrome c. Nature. 286: 304-5. PMID 6250059 DOI: 10.1038/286304A0 |
0.59 |
|
1980 |
Pear MR, Northrup SH, McCammon JA. Diffusional correlations in polymer dynamics The Journal of Chemical Physics. 73: 4703-4704. DOI: 10.1063/1.440668 |
0.338 |
|
1980 |
Northrup SH, Hynes JT. The stable states picture of chemical reactions. I. Formulation for rate constants and initial condition effects The Journal of Chemical Physics. 73: 2700-2714. DOI: 10.1063/1.440484 |
0.577 |
|
1980 |
Northrup SH, McCammon JA. Efficient trajectory simulation methods for diffusional barrier crossing processes The Journal of Chemical Physics. 72: 4569-4578. DOI: 10.1063/1.439698 |
0.515 |
|
1980 |
McCammon JA, Northrup SH, Karplus M, Levy RM. Helix-coil transitions in a simple polypeptide model Biopolymers. 19: 2033-2045. DOI: 10.1002/Bip.1980.360191108 |
0.59 |
|
1979 |
Northrup SH, Hynes JT. Short range caging effects for reactions in solution. II. Escape probability and time dependent reactivity The Journal of Chemical Physics. 71: 884-893. DOI: 10.1063/1.438379 |
0.568 |
|
1979 |
Northrup SH, Hynes JT. Short range caging effects for reactions in solution. I. Reaction rate constants and short range caging picture The Journal of Chemical Physics. 71: 871-883. DOI: 10.1063/1.438378 |
0.595 |
|
1978 |
Northrup SH, Hynes JT. Initial condition effects for diffusive barrier crossing The Journal of Chemical Physics. 69: 5261-5266. DOI: 10.1063/1.436579 |
0.546 |
|
1978 |
Northrup SH, Hynes JT. Reactive dynamics for diffusive barrier crossing The Journal of Chemical Physics. 69: 5246-5260. DOI: 10.1063/1.436578 |
0.591 |
|
1978 |
Northrup SH, Hynes JT. Coupling of translational and reactive dynamics for a Fokker–Planck model The Journal of Chemical Physics. 68: 3203-3216. DOI: 10.1063/1.436121 |
0.527 |
|
1978 |
Northrup SH, Hynes JT. On reaction rate constants and rate kernels Chemical Physics Letters. 54: 248-252. DOI: 10.1016/0009-2614(78)80094-3 |
0.57 |
|
1978 |
Northrup SH, Hynes JT. On the description of reactions in solution Chemical Physics Letters. 54: 244-247. DOI: 10.1016/0009-2614(78)80093-1 |
0.575 |
|
1978 |
Northrup SH, Hynes JT. Coupling of translational and reactive dynamics for a simple lattice model Journal of Statistical Physics. 18: 91-105. DOI: 10.1007/Bf01014672 |
0.532 |
|
1978 |
Northrup SH, Hynes JT. Reactive dynamics for diffusive barrier crossing The Journal of Chemical Physics. 69: 5246-5260. |
0.336 |
|
1978 |
Northrup SH, Hynes JT. Coupling of translational and reactive dynamics for a Fokker-Planck model The Journal of Chemical Physics. 68: 3203-3216. |
0.304 |
|
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