Logan J. Everett, Ph.D. - Publications

Affiliations: 
2010 University of Pennsylvania, Philadelphia, PA, United States 
Area:
Bioinformatics Biology, Genetics, Molecular Biology

18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Soccio RE, Chen ER, Rajapurkar SR, Safabakhsh P, Marinis JM, Dispirito JR, Emmett MJ, Briggs ER, Fang B, Everett LJ, Lim HW, Won KJ, Steger DJ, Wu Y, Civelek M, et al. Genetic Variation Determines PPARγ Function and Anti-diabetic Drug Response In Vivo. Cell. 162: 33-44. PMID 26140591 DOI: 10.1016/J.Cell.2015.06.025  0.319
2014 Fang B, Everett LJ, Jager J, Briggs E, Armour SM, Feng D, Roy A, Gerhart-Hines Z, Sun Z, Lazar MA. Circadian enhancers coordinate multiple phases of rhythmic gene transcription in vivo. Cell. 159: 1140-52. PMID 25416951 DOI: 10.1016/J.Cell.2014.10.022  0.383
2014 Shin S, Le Lay J, Everett LJ, Gupta R, Rafiq K, Kaestner KH. CREB mediates the insulinotropic and anti-apoptotic effects of GLP-1 signaling in adult mouse β-cells. Molecular Metabolism. 3: 803-12. PMID 25379405 DOI: 10.1016/J.Molmet.2014.08.001  0.315
2014 Everett LJ, Lazar MA. Nuclear receptor Rev-erbα: up, down, and all around. Trends in Endocrinology and Metabolism: Tem. 25: 586-92. PMID 25066191 DOI: 10.1016/J.Tem.2014.06.011  0.338
2014 Plasschaert RN, Vigneau S, Tempera I, Gupta R, Maksimoska J, Everett L, Davuluri R, Mamorstein R, Lieberman PM, Schultz D, Hannenhalli S, Bartolomei MS. CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation. Nucleic Acids Research. 42: 774-89. PMID 24121688 DOI: 10.1093/Nar/Gkt910  0.327
2013 Sun Z, Feng D, Fang B, Mullican SE, You SH, Lim HW, Everett LJ, Nabel CS, Li Y, Selvakumaran V, Won KJ, Lazar MA. Deacetylase-independent function of HDAC3 in transcription and metabolism requires nuclear receptor corepressor. Molecular Cell. 52: 769-82. PMID 24268577 DOI: 10.1016/J.Molcel.2013.10.022  0.39
2013 Everett LJ, Lazar MA. Cell-specific integration of nuclear receptor function at the genome. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 5: 615-29. PMID 23757177 DOI: 10.1002/Wsbm.1231  0.386
2013 Everett LJ, Le Lay J, Lukovac S, Bernstein D, Steger DJ, Lazar MA, Kaestner KH. Integrative genomic analysis of CREB defines a critical role for transcription factor networks in mediating the fed/fasted switch in liver. Bmc Genomics. 14: 337. PMID 23682854 DOI: 10.1186/1471-2164-14-337  0.432
2013 Xie R, Everett LJ, Lim HW, Patel NA, Schug J, Kroon E, Kelly OG, Wang A, D'Amour KA, Robins AJ, Won KJ, Kaestner KH, Sander M. Dynamic chromatin remodeling mediated by polycomb proteins orchestrates pancreatic differentiation of human embryonic stem cells. Cell Stem Cell. 12: 224-37. PMID 23318056 DOI: 10.1016/J.Stem.2012.11.023  0.377
2012 Bugge A, Feng D, Everett LJ, Briggs ER, Mullican SE, Wang F, Jager J, Lazar MA. Rev-erbα and Rev-erbβ coordinately protect the circadian clock and normal metabolic function. Genes & Development. 26: 657-67. PMID 22474260 DOI: 10.1101/Gad.186858.112  0.354
2011 Sun Z, Feng D, Everett LJ, Bugge A, Lazar MA. Circadian epigenomic remodeling and hepatic lipogenesis: lessons from HDAC3. Cold Spring Harbor Symposia On Quantitative Biology. 76: 49-55. PMID 21900149 DOI: 10.1101/Sqb.2011.76.011494  0.387
2011 Everett LJ, Jensen ST, Hannenhalli S. Transcriptional regulation via TF-modifying enzymes: an integrative model-based analysis. Nucleic Acids Research. 39: e78. PMID 21470963 DOI: 10.1093/Nar/Gkr172  0.377
2011 Soccio RE, Tuteja G, Everett LJ, Li Z, Lazar MA, Kaestner KH. Species-specific strategies underlying conserved functions of metabolic transcription factors. Molecular Endocrinology (Baltimore, Md.). 25: 694-706. PMID 21292830 DOI: 10.1210/Me.2010-0454  0.391
2010 Everett L, Hansen M, Hannenhalli S. Regulating the regulators: modulators of transcription factor activity. Methods in Molecular Biology (Clifton, N.J.). 674: 297-312. PMID 20827600 DOI: 10.1007/978-1-60761-854-6_19  0.425
2010 Hansen M, Everett L, Singh L, Hannenhalli S. Mimosa: mixture model of co-expression to detect modulators of regulatory interaction. Algorithms For Molecular Biology : Amb. 5: 4. PMID 20047660 DOI: 10.1186/1748-7188-5-4  0.35
2010 Everett LJ, Bierl C, Master SR. Unbiased statistical analysis for multi-stage proteomic search strategies. Journal of Proteome Research. 9: 700-7. PMID 19947654 DOI: 10.1021/Pr900256V  0.467
2009 Everett L, Vo A, Hannenhalli S. PTM-Switchboard--a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes. Nucleic Acids Research. 37: D66-71. PMID 18927104 DOI: 10.1093/Nar/Gkn731  0.429
2006 Everett L, Wang LS, Hannenhalli S. Dense subgraph computation via stochastic search: application to detect transcriptional modules. Bioinformatics (Oxford, England). 22: e117-23. PMID 16873461 DOI: 10.1093/Bioinformatics/Btl260  0.38
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