Thaddeus S. Stappenbeck - Publications

Biology & Biomedical Sciences (Molecular Cell Biology) Washington University, Saint Louis, St. Louis, MO 
Cell Biology, Molecular Biology

132 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Seiler KM, Bajinting A, Alvarado DM, Traore MA, Binkley MM, Goo WH, Lanik WE, Ou J, Ismail U, Iticovici M, King CR, VanDussen KL, Swietlicki EA, Gazit V, Guo J, ... ... Stappenbeck T, et al. Patient-derived small intestinal myofibroblasts direct perfused, physiologically responsive capillary development in a microfluidic Gut-on-a-Chip Model. Scientific Reports. 10: 3842. PMID 32123209 DOI: 10.1038/s41598-020-60672-5  1
2020 Jarjour NN, Bradstreet TR, Schwarzkopf EA, Cook ME, Lai CW, Huang SC, Taneja R, Stappenbeck TS, Van Dyken SJ, Urban JF, Edelson BT. BHLHE40 Promotes T2 Cell-Mediated Antihelminth Immunity and Reveals Cooperative CSF2RB Family Cytokines. Journal of Immunology (Baltimore, Md. : 1950). PMID 31900338 DOI: 10.4049/jimmunol.1900978  0.4
2020 Wilke G, Wang Y, Ravindran S, Stappenbeck T, Witola WH, Sibley LD. In Vitro Culture of Cryptosporidium parvum Using Stem Cell-Derived Intestinal Epithelial Monolayers. Methods in Molecular Biology (Clifton, N.J.). 2052: 351-372. PMID 31452172 DOI: 10.1007/978-1-4939-9748-0_20  0.4
2019 Wang Y, Chiang IL, Ohara TE, Fujii S, Cheng J, Muegge BD, Ver Heul A, Han ND, Lu Q, Xiong S, Chen F, Lai CW, Janova H, Wu R, Whitehurst CE, ... ... Stappenbeck TS, et al. Long-Term Culture Captures Injury-Repair Cycles of Colonic Stem Cells. Cell. PMID 31708126 DOI: 10.1016/j.cell.2019.10.015  1
2019 Wilke G, Funkhouser-Jones LJ, Wang Y, Ravindran S, Wang Q, Beatty WL, Baldridge MT, VanDussen KL, Shen B, Kuhlenschmidt MS, Kuhlenschmidt TB, Witola WH, Stappenbeck TS, Sibley LD. A Stem-Cell-Derived Platform Enables Complete Cryptosporidium Development In Vitro and Genetic Tractability. Cell Host & Microbe. PMID 31231046 DOI: 10.1016/j.chom.2019.05.007  1
2019 Malvin NP, Kern JT, Liu TC, Brody SL, Stappenbeck T. Autophagy proteins are required for club cell structure and function in airways. American Journal of Physiology. Lung Cellular and Molecular Physiology. PMID 31116580 DOI: 10.1152/ajplung.00394.2018  0.4
2019 Jarjour NN, Schwarzkopf EA, Bradstreet TR, Shchukina I, Lin CC, Huang SC, Lai CW, Cook ME, Taneja R, Stappenbeck TS, Randolph GJ, Artyomov MN, Urban JF, Edelson BT. Bhlhe40 mediates tissue-specific control of macrophage proliferation in homeostasis and type 2 immunity. Nature Immunology. PMID 31061528 DOI: 10.1038/s41590-019-0382-5  0.4
2019 VanDussen KL, Sonnek NM, Stappenbeck TS. L-WRN conditioned medium for gastrointestinal epithelial stem cell culture shows replicable batch-to-batch activity levels across multiple research teams. Stem Cell Research. 37: 101430. PMID 30933720 DOI: 10.1016/j.scr.2019.101430  1
2019 Potdar AA, Li D, Haritunians T, VanDussen KL, Fiorino MF, Liu TC, Stappenbeck TS, Fleshner P, Targan SR, McGovern DPB, Bilsborough J. Ileal Gene Expression Data from Crohn's Disease Small Bowel Resections Indicate Distinct Clinical Sub-Groups. Journal of Crohn's & Colitis. PMID 30877309 DOI: 10.1093/ecco-jcc/jjz021  1
2019 Kaiko GE, Chen F, Lai CW, Chiang IL, Perrigoue J, Stojmirović A, Li K, Muegge BD, Jain U, VanDussen KL, Goggins BJ, Keely S, Weaver J, Foster PS, Lawrence DA, ... ... Stappenbeck TS, et al. PAI-1 augments mucosal damage in colitis. Science Translational Medicine. 11. PMID 30842312 DOI: 10.1126/scitranslmed.aat0852  1
2018 White JP, Xiong S, Malvin NP, Khoury-Hanold W, Heuckeroth RO, Stappenbeck TS, Diamond MS. Intestinal Dysmotility Syndromes following Systemic Infection by Flaviviruses. Cell. PMID 30293866 DOI: 10.1016/j.cell.2018.08.069  0.4
2018 Ryu SH, Kaiko GE, Stappenbeck TS. Cellular differentiation: Potential insight into butyrate paradox? Molecular & Cellular Oncology. 5: e1212685. PMID 30250879 DOI: 10.1080/23723556.2016.1212685  0.4
2018 Liu TC, Kern JT, VanDussen KL, Xiong S, Kaiko GE, Wilen CB, Rajala MW, Caruso R, Holtzman MJ, Gao F, McGovern DP, Nunez G, Head RD, Stappenbeck TS. Interaction between smoking and ATG16L1T300A triggers Paneth cell defects in Crohn's disease. The Journal of Clinical Investigation. PMID 30137026 DOI: 10.1172/JCI120453  1
2018 Jain U, Lai CW, Xiong S, Goodwin VM, Lu Q, Muegge BD, Christophi GP, VanDussen KL, Cummings BP, Young E, Hambor J, Stappenbeck TS. Temporal Regulation of the Bacterial Metabolite Deoxycholate during Colonic Repair Is Critical for Crypt Regeneration. Cell Host & Microbe. PMID 30122655 DOI: 10.1016/j.chom.2018.07.019  1
2018 Zhao D, Kim YH, Jeong S, Greenson JK, Chaudhry MS, Hoepting M, Anderson ER, van den Brink MR, Peled JU, Gomes AL, Slingerland AE, Donovan MJ, Harris AC, Levine JE, Özbek U, ... ... Stappenbeck TS, et al. Survival signal REG3-α prevents crypt apoptosis to control acute gastrointestinal graft-versus-host disease. The Journal of Clinical Investigation. PMID 30106382 DOI: 10.1172/JCI99261  0.68
2018 Wilke G, Ravindran S, Funkhouser-Jones L, Barks J, Wang Q, VanDussen KL, Stappenbeck TS, Kuhlenschmidt TB, Kuhlenschmidt MS, Sibley LD. Monoclonal Antibodies to Intracellular Stages of Cryptosporidium parvum Define Life Cycle Progression . Msphere. 3. PMID 29848759 DOI: 10.1128/mSphere.00124-18  1
2018 VanDussen KL, Stojmirović A, Li K, Liu TC, Kimes PK, Muegge BD, Simpson KF, Ciorba MA, Perrigoue JG, Friedman JR, Towne JE, Head RD, Stappenbeck TS. Abnormal Small Intestinal Epithelial Microvilli in Patients With Crohn's Disease. Gastroenterology. PMID 29782846 DOI: 10.1053/j.gastro.2018.05.028  1
2018 Verma MS, Fink MJ, Salmon GL, Fornelos N, Ohara TE, Ryu SH, Vlamakis H, Xavier RJ, Stappenbeck TS, Whitesides GM. A common mechanism links activities of butyrate in the colon. Acs Chemical Biology. PMID 29584955 DOI: 10.1021/acschembio.8b00073  0.4
2017 Chai JN, Peng Y, Rengarajan S, Solomon BD, Ai TL, Shen Z, Perry JSA, Knoop KA, Tanoue T, Narushima S, Honda K, Elson CO, Newberry RD, Stappenbeck TS, Kau AL, et al. Helicobacter species are potent drivers of colonic T cell responses in homeostasis and inflammation. Science Immunology. 2. PMID 28733471 DOI: 10.1126/sciimmunol.aal5068  0.56
2017 Liu TC, Naito T, Liu Z, VanDussen KL, Haritunians T, Li D, Endo K, Kawai Y, Nagasaki M, Kinouchi Y, McGovern DP, Shimosegawa T, Kakuta Y, Stappenbeck TS. LRRK2 but not ATG16L1 is associated with Paneth cell defect in Japanese Crohn's disease patients. Jci Insight. 2: e91917. PMID 28352666 DOI: 10.1172/jci.insight.91917  1
2016 Wagner VE, Dey N, Guruge J, Hsiao A, Ahern PP, Semenkovich NP, Blanton LV, Cheng J, Griffin N, Stappenbeck TS, Ilkayeva O, Newgard CB, Petri W, Haque R, Ahmed T, et al. Effects of a gut pathobiont in a gnotobiotic mouse model of childhood undernutrition. Science Translational Medicine. 8: 366ra164. PMID 27881825 DOI: 10.1126/scitranslmed.aah4669  0.96
2016 Kaiko GE, Ryu SH, Koues OI, Collins PL, Solnica-Krezel L, Pearce EJ, Pearce EL, Oltz EM, Stappenbeck TS. The Colonic Crypt Protects Stem Cells from Microbiota-Derived Metabolites. Cell. 167: 1137. PMID 27814510 DOI: 10.1016/j.cell.2016.10.034  0.4
2016 Miyoshi H, VanDussen KL, Malvin NP, Ryu SH, Wang Y, Sonnek NM, Lai CW, Stappenbeck TS. Prostaglandin E2 promotes intestinal repair through an adaptive cellular response of the epithelium. The Embo Journal. PMID 27797821 DOI: 10.15252/embj.201694660  1
2016 Liu TC, Gurram B, Baldridge MT, Head R, Lam V, Luo C, Cao Y, Simpson P, Hayward M, Holtz ML, Bousounis P, Noe J, Lerner D, Cabrera J, Biank V, ... ... Stappenbeck TS, et al. Paneth cell defects in Crohn's disease patients promote dysbiosis. Jci Insight. 1: e86907. PMID 27699268 DOI: 10.1172/jci.insight.86907  0.36
2016 Uchiyama K, Sakiyama T, Hasebe T, Musch MW, Miyoshi H, Nakagawa Y, He TC, Lichtenstein L, Naito Y, Itoh Y, Yoshikawa T, Jabri B, Stappenbeck T, Chang EB. Butyrate and bioactive proteolytic form of Wnt-5a regulate colonic epithelial proliferation and spatial development. Scientific Reports. 6: 32094. PMID 27561676 DOI: 10.1038/srep32094  1
2016 Garn H, Bahn S, Baune BT, Binder EB, Bisgaard H, Chatila TA, Chavakis T, Culmsee C, Dannlowski U, Gay S, Gern J, Haahtela T, Kircher T, Müller-Ladner U, Neurath MF, ... ... Stappenbeck T, et al. Current concepts in chronic inflammatory diseases: Interactions between microbes, cellular metabolism, and inflammation. The Journal of Allergy and Clinical Immunology. 138: 47-56. PMID 27373325 DOI: 10.1016/j.jaci.2016.02.046  1
2016 Stappenbeck TS, Virgin HW. Accounting for reciprocal host-microbiome interactions in experimental science. Nature. 534: 191-9. PMID 27279212 DOI: 10.1038/nature18285  1
2016 Kaiko GE, Ryu SH, Koues OI, Collins PL, Solnica-Krezel L, Pearce EJ, Pearce EL, Oltz EM, Stappenbeck TS. The Colonic Crypt Protects Stem Cells from Microbiota-Derived Metabolites. Cell. PMID 27264604 DOI: 10.1016/j.cell.2016.05.018  1
2016 Liu TC, Stappenbeck TS. Genetics and Pathogenesis of Inflammatory Bowel Disease. Annual Review of Pathology. PMID 26907531 DOI: 10.1146/annurev-pathol-012615-044152  1
2015 Tinkum KL, Stemler KM, White LS, Loza AJ, Jeter-Jones S, Michalski BM, Kuzmicki C, Pless R, Stappenbeck TS, Piwnica-Worms D, Piwnica-Worms H. Fasting protects mice from lethal DNA damage by promoting small intestinal epithelial stem cell survival. Proceedings of the National Academy of Sciences of the United States of America. PMID 26644583 DOI: 10.1073/pnas.1509249112  1
2015 Song C, Lee JS, Gilfillan S, Robinette ML, Newberry RD, Stappenbeck TS, Mack M, Cella M, Colonna M. Unique and redundant functions of NKp46+ ILC3s in models of intestinal inflammation. The Journal of Experimental Medicine. PMID 26458769 DOI: 10.1084/jem.20151403  1
2015 Ebihara T, Song C, Ryu SH, Plougastel-Douglas B, Yang L, Levanon D, Groner Y, Bern MD, Stappenbeck TS, Colonna M, Egawa T, Yokoyama WM. Runx3 specifies lineage commitment of innate lymphoid cells. Nature Immunology. PMID 26414766 DOI: 10.1038/ni.3272  1
2015 Avetisyan M, Wang H, Schill EM, Bery S, Grider JR, Hassell JA, Stappenbeck T, Heuckeroth RO. Hepatocyte Growth Factor and MET Support Mouse Enteric Nervous System Development, the Peristaltic Response, and Intestinal Epithelial Proliferation in Response to Injury. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 11543-58. PMID 26290232 DOI: 10.1523/JNEUROSCI.5267-14.2015  1
2015 Ryu SH, Stappenbeck TS. Gut-Pancreatic Axis AMPlified in Islets of Langerhans. Immunity. 43: 216-8. PMID 26287677 DOI: 10.1016/j.immuni.2015.08.003  1
2015 Manieri NA, Mack MR, Himmelrich MD, Worthley DL, Hanson EM, Eckmann L, Wang TC, Stappenbeck TS. Mucosally transplanted mesenchymal stem cells stimulate intestinal healing by promoting angiogenesis. The Journal of Clinical Investigation. 125: 3606-18. PMID 26280574 DOI: 10.1172/JCI81423  1
2015 Dickinson JD, Alevy Y, Malvin NP, Patel KK, Gunsten SP, Holtzman MJ, Stappenbeck TS, Brody SL. IL13 activates autophagy to regulate secretion in airway epithelial cells. Autophagy. 0. PMID 26062017 DOI: 10.1080/15548627.2015.1056967  1
2015 Hickey CA, Kuhn KA, Donermeyer DL, Porter NT, Jin C, Cameron EA, Jung H, Kaiko GE, Wegorzewska M, Malvin NP, Glowacki RW, Hansson GC, Allen PM, Martens EC, Stappenbeck TS. Colitogenic Bacteroides thetaiotaomicron Antigens Access Host Immune Cells in a Sulfatase-Dependent Manner via Outer Membrane Vesicles. Cell Host & Microbe. 17: 672-80. PMID 25974305 DOI: 10.1016/j.chom.2015.04.002  1
2015 Eckmann L, Stappenbeck TS. IgG "detoxes" the intestinal mucosa. Cell Host & Microbe. 17: 538-9. PMID 25974292 DOI: 10.1016/j.chom.2015.05.001  1
2015 Kau AL, Planer JD, Liu J, Rao S, Yatsunenko T, Trehan I, Manary MJ, Liu TC, Stappenbeck TS, Maleta KM, Ashorn P, Dewey KG, Houpt ER, Hsieh CS, Gordon JI. Functional characterization of IgA-targeted bacterial taxa from undernourished Malawian children that produce diet-dependent enteropathy. Science Translational Medicine. 7: 276ra24. PMID 25717097 DOI: 10.1126/scitranslmed.aaa4877  0.96
2015 Moon C, Baldridge MT, Wallace MA, Burnham CA, Virgin HW, Stappenbeck TS. Vertically transmitted faecal IgA levels determine extra-chromosomal phenotypic variation. Nature. 521: 90-3. PMID 25686606 DOI: 10.1038/nature14139  1
2015 Norman JM, Handley SA, Baldridge MT, Droit L, Liu CY, Keller BC, Kambal A, Monaco CL, Zhao G, Fleshner P, Stappenbeck TS, McGovern DP, Keshavarzian A, Mutlu EA, Sauk J, et al. Disease-specific alterations in the enteric virome in inflammatory bowel disease. Cell. 160: 447-60. PMID 25619688 DOI: 10.1016/j.cell.2015.01.002  1
2015 Worthley DL, Churchill M, Compton JT, Tailor Y, Rao M, Si Y, Levin D, Schwartz MG, Uygur A, Hayakawa Y, Gross S, Renz BW, Setlik W, Martinez AN, Chen X, ... ... Stappenbeck TS, et al. Gremlin 1 identifies a skeletal stem cell with bone, cartilage, and reticular stromal potential. Cell. 160: 269-84. PMID 25594183 DOI: 10.1016/j.cell.2014.11.042  1
2015 Sun L, Miyoshi H, Origanti S, Nice TJ, Barger AC, Manieri NA, Fogel LA, French AR, Piwnica-Worms D, Piwnica-Worms H, Virgin HW, Lenschow DJ, Stappenbeck TS. Type I interferons link viral infection to enhanced epithelial turnover and repair. Cell Host & Microbe. 17: 85-97. PMID 25482432 DOI: 10.1016/j.chom.2014.11.004  1
2015 Morales DJ, Monte K, Sun L, Struckhoff JJ, Agapov E, Holtzman MJ, Stappenbeck TS, Lenschow DJ. Novel mode of ISG15-mediated protection against influenza A virus and Sendai virus in mice. Journal of Virology. 89: 337-49. PMID 25320315 DOI: 10.1128/JVI.02110-14  1
2015 VanDussen KL, Marinshaw JM, Shaikh N, Miyoshi H, Moon C, Tarr PI, Ciorba MA, Stappenbeck TS. Development of an enhanced human gastrointestinal epithelial culture system to facilitate patient-based assays. Gut. 64: 911-20. PMID 25007816 DOI: 10.1136/gutjnl-2013-306651  1
2015 Elliott EN, Sheaffer KL, Schug J, Stappenbeck TS, Kaestner KH. Dnmt1 is essential to maintain progenitors in the perinatal intestinal epithelium Development (Cambridge). 142: 2163-2172. DOI: 10.1242/dev.117341  1
2014 Hannan TJ, Roberts PL, Riehl TE, van der Post S, Binkley JM, Schwartz DJ, Miyoshi H, Mack M, Schwendener RA, Hooton TM, Stappenbeck TS, Hansson GC, Stenson WF, Colonna M, Stapleton AE, et al. Inhibition of Cyclooxygenase-2 Prevents Chronic and Recurrent Cystitis. Ebiomedicine. 1: 46-57. PMID 26125048 DOI: 10.1016/j.ebiom.2014.10.011  0.68
2014 Kuhn KA, Manieri NA, Liu TC, Stappenbeck TS. IL-6 stimulates intestinal epithelial proliferation and repair after injury. Plos One. 9: e114195. PMID 25478789 DOI: 10.1371/journal.pone.0114195  1
2014 Steed AL, Stappenbeck TS. Role of viruses and bacteria-virus interactions in autoimmunity. Current Opinion in Immunology. 31: 102-7. PMID 25459001 DOI: 10.1016/j.coi.2014.10.006  1
2014 Kaiko GE, Stappenbeck TS. Host-microbe interactions shaping the gastrointestinal environment. Trends in Immunology. 35: 538-48. PMID 25220948 DOI: 10.1016/  1
2014 Lassen KG, Kuballa P, Conway KL, Patel KK, Becker CE, Peloquin JM, Villablanca EJ, Norman JM, Liu TC, Heath RJ, Becker ML, Fagbami L, Horn H, Mercer J, Yilmaz OH, ... ... Stappenbeck TS, et al. Atg16L1 T300A variant decreases selective autophagy resulting in altered cytokine signaling and decreased antibacterial defense. Proceedings of the National Academy of Sciences of the United States of America. 111: 7741-6. PMID 24821797 DOI: 10.1073/pnas.1407001111  1
2014 Chen GY, Stappenbeck TS. Mucus, it is not just a static barrier. Science Signaling. 7: pe11. PMID 24782564 DOI: 10.1126/scisignal.2005357  1
2014 Liu TC, Gao F, McGovern DP, Stappenbeck TS. Spatial and temporal stability of paneth cell phenotypes in Crohn's disease: implications for prognostic cellular biomarker development. Inflammatory Bowel Diseases. 20: 646-51. PMID 24552829 DOI: 10.1097/01.MIB.0000442838.21040.d7  1
2014 Moon C, VanDussen KL, Miyoshi H, Stappenbeck TS. Development of a primary mouse intestinal epithelial cell monolayer culture system to evaluate factors that modulate IgA transcytosis. Mucosal Immunology. 7: 818-28. PMID 24220295 DOI: 10.1038/mi.2013.98  1
2014 VanDussen KL, Liu TC, Li D, Towfic F, Modiano N, Winter R, Haritunians T, Taylor KD, Dhall D, Targan SR, Xavier RJ, McGovern DP, Stappenbeck TS. Genetic variants synthesize to produce paneth cell phenotypes that define subtypes of Crohn's disease. Gastroenterology. 146: 200-9. PMID 24076061 DOI: 10.1053/j.gastro.2013.09.048  1
2013 Miyoshi H, Stappenbeck TS. The young and the Wnt-less: transplantable fetal intestinal spheroids without Wnts. Cell Stem Cell. 13: 637-8. PMID 24315434 DOI: 10.1016/j.stem.2013.11.019  1
2013 Miyoshi H, Stappenbeck TS. In vitro expansion and genetic modification of gastrointestinal stem cells in spheroid culture. Nature Protocols. 8: 2471-82. PMID 24232249 DOI: 10.1038/nprot.2013.153  1
2013 Patel KK, Miyoshi H, Beatty WL, Head RD, Malvin NP, Cadwell K, Guan JL, Saitoh T, Akira S, Seglen PO, Dinauer MC, Virgin HW, Stappenbeck TS. Autophagy proteins control goblet cell function by potentiating reactive oxygen species production. The Embo Journal. 32: 3130-44. PMID 24185898 DOI: 10.1038/emboj.2013.233  1
2013 Kuhn KA, Stappenbeck TS. Peripheral education of the immune system by the colonic microbiota. Seminars in Immunology. 25: 364-9. PMID 24169518 DOI: 10.1016/j.smim.2013.10.002  1
2013 Conway KL, Kuballa P, Song JH, Patel KK, Castoreno AB, Yilmaz OH, Jijon HB, Zhang M, Aldrich LN, Villablanca EJ, Peloquin JM, Goel G, Lee IA, Mizoguchi E, Shi HN, ... ... Stappenbeck TS, et al. Atg16l1 is required for autophagy in intestinal epithelial cells and protection of mice from Salmonella infection. Gastroenterology. 145: 1347-57. PMID 23973919 DOI: 10.1053/j.gastro.2013.08.035  1
2013 Byers DE, Alexander-Brett J, Patel AC, Agapov E, Dang-Vu G, Jin X, Wu K, You Y, Alevy Y, Girard JP, Stappenbeck TS, Patterson GA, Pierce RA, Brody SL, Holtzman MJ. Long-term IL-33-producing epithelial progenitor cells in chronic obstructive lung disease. The Journal of Clinical Investigation. 123: 3967-82. PMID 23945235 DOI: 10.1172/JCI65570  1
2013 Satpathy AT, Briseño CG, Lee JS, Ng D, Manieri NA, Kc W, Wu X, Thomas SR, Lee WL, Turkoz M, McDonald KG, Meredith MM, Song C, Guidos CJ, Newberry RD, ... ... Stappenbeck TS, et al. Notch2-dependent classical dendritic cells orchestrate intestinal immunity to attaching-and-effacing bacterial pathogens. Nature Immunology. 14: 937-48. PMID 23913046 DOI: 10.1038/ni.2679  1
2013 Aly H, Rohatgi N, Marshall CA, Grossenheider TC, Miyoshi H, Stappenbeck TS, Matkovich SJ, McDaniel ML. A novel strategy to increase the proliferative potential of adult human β-cells while maintaining their differentiated phenotype. Plos One. 8: e66131. PMID 23776620 DOI: 10.1371/journal.pone.0066131  1
2013 Denson LA, Long MD, McGovern DP, Kugathasan S, Wu GD, Young VB, Pizarro TT, de Zoeten EF, Stappenbeck TS, Plevy SE, Abraham C, Nusrat A, Jobin C, McCole DF, Siegel CA, et al. Challenges in IBD research: update on progress and prioritization of the CCFA's research agenda. Inflammatory Bowel Diseases. 19: 677-82. PMID 23448796 DOI: 10.1097/MIB.0b013e31828134b3  1
2013 Miyoshi H, Stappenbeck TS. Counteracting stem cell expansion during wound repair: distinct roles of non-canonical Wnt and TGF-β. Cell Cycle (Georgetown, Tex.). 12: 387-8. PMID 23324346 DOI: 10.4161/cc.23552  1
2013 Patel KK, Stappenbeck TS. Autophagy and intestinal homeostasis. Annual Review of Physiology. 75: 241-62. PMID 23216414 DOI: 10.1146/annurev-physiol-030212-183658  1
2012 Handley SA, Thackray LB, Zhao G, Presti R, Miller AD, Droit L, Abbink P, Maxfield LF, Kambal A, Duan E, Stanley K, Kramer J, Macri SC, Permar SR, Schmitz JE, ... ... Stappenbeck TS, et al. Pathogenic simian immunodeficiency virus infection is associated with expansion of the enteric virome. Cell. 151: 253-66. PMID 23063120 DOI: 10.1016/j.cell.2012.09.024  1
2012 Miyoshi H, Ajima R, Luo CT, Yamaguchi TP, Stappenbeck TS. Wnt5a potentiates TGF-β signaling to promote colonic crypt regeneration after tissue injury. Science (New York, N.Y.). 338: 108-13. PMID 22956684 DOI: 10.1126/science.1223821  1
2012 Yokoyama CC, Loh J, Zhao G, Stappenbeck TS, Wang D, Huang HV, Virgin HW, Thackray LB. Adaptive immunity restricts replication of novel murine astroviruses. Journal of Virology. 86: 12262-70. PMID 22951832 DOI: 10.1128/JVI.02018-12  1
2012 Wakeman D, Schneider JE, Liu J, Wandu WS, Erwin CR, Guo J, Stappenbeck TS, Warner BW. Deletion of p38-alpha mitogen-activated protein kinase within the intestinal epithelium promotes colon tumorigenesis. Surgery. 152: 286-93. PMID 22828150 DOI: 10.1016/j.surg.2012.05.009  1
2012 Moon C, Stappenbeck TS. Viral interactions with the host and microbiota in the intestine. Current Opinion in Immunology. 24: 405-10. PMID 22626624 DOI: 10.1016/j.coi.2012.05.002  1
2012 Manieri NA, Drylewicz MR, Miyoshi H, Stappenbeck TS. Igf2bp1 is required for full induction of Ptgs2 mRNA in colonic mesenchymal stem cells in mice. Gastroenterology. 143: 110-21.e10. PMID 22465430 DOI: 10.1053/j.gastro.2012.03.037  1
2012 Malvin NP, Seno H, Stappenbeck TS. Colonic epithelial response to injury requires Myd88 signaling in myeloid cells Mucosal Immunology. 5: 194-206. PMID 22258450 DOI: 10.1038/mi.2011.65  1
2012 Ciorba MA, Riehl TE, Rao MS, Moon C, Ee X, Nava GM, Walker MR, Marinshaw JM, Stappenbeck TS, Stenson WF. Lactobacillus probiotic protects intestinal epithelium from radiation injury in a TLR-2/cyclo-oxygenase-2-dependent manner. Gut. 61: 829-38. PMID 22027478 DOI: 10.1136/gutjnl-2011-300367  1
2011 Lathrop SK, Bloom SM, Rao SM, Nutsch K, Lio CW, Santacruz N, Peterson DA, Stappenbeck TS, Hsieh CS. Peripheral education of the immune system by colonic commensal microbiota. Nature. 478: 250-4. PMID 21937990 DOI: 10.1038/nature10434  1
2011 Nava GM, Stappenbeck TS. Diversity of the autochthonous colonic microbiota. Gut Microbes. 2: 99-104. PMID 21694499 DOI: 10.4161/gmic.2.2.15416  1
2011 Bloom SM, Bijanki VN, Nava GM, Sun L, Malvin NP, Donermeyer DL, Dunne WM, Allen PM, Stappenbeck TS. Commensal Bacteroides species induce colitis in host-genotype-specific fashion in a mouse model of inflammatory bowel disease. Cell Host & Microbe. 9: 390-403. PMID 21575910 DOI: 10.1016/j.chom.2011.04.009  1
2011 Sun L, Nava GM, Stappenbeck TS. Host genetic susceptibility, dysbiosis, and viral triggers in inflammatory bowel disease. Current Opinion in Gastroenterology. 27: 321-7. PMID 21483258 DOI: 10.1097/MOG.0b013e32834661b4  1
2011 Patel AC, Brody SL, Stappenbeck TS, Holtzman MJ. Tracking cell lineage to rediscover (again) the switch from ciliated to mucous cells. American Journal of Respiratory Cell and Molecular Biology. 44: 261-3. PMID 21364232 DOI: 10.1165/rcmb.2011-0021ED  1
2011 Lee G, Origanti S, White LS, Sun J, Stappenbeck TS, Piwnica-Worms H. Contributions made by CDC25 phosphatases to proliferation of intestinal epithelial stem and progenitor cells. Plos One. 6: e15561. PMID 21283624 DOI: 10.1371/journal.pone.0015561  1
2011 von Furstenberg RJ, Gulati AS, Baxi A, Doherty JM, Stappenbeck TS, Gracz AD, Magness ST, Henning SJ. Sorting mouse jejunal epithelial cells with CD24 yields a population with characteristics of intestinal stem cells. American Journal of Physiology. Gastrointestinal and Liver Physiology. 300: G409-17. PMID 21183658 DOI: 10.1152/ajpgi.00453.2010  1
2011 Manieri NA, Stappenbeck TS. Mesenchymal stem cell therapy of intestinal disease: are their effects systemic or localized? Current Opinion in Gastroenterology. 27: 119-24. PMID 21150589 DOI: 10.1097/MOG.0b013e3283423f20  1
2011 Nava GM, Friedrichsen HJ, Stappenbeck TS. Spatial organization of intestinal microbiota in the mouse ascending colon. The Isme Journal. 5: 627-38. PMID 20981114 DOI: 10.1038/ismej.2010.161  1
2011 Stappenbeck TS, Rioux JD, Mizoguchi A, Saitoh T, Huett A, Darfeuille-Michaud A, Wileman T, Mizushima N, Carding S, Akira S, Parkes M, Xavier RJ. Crohn disease: a current perspective on genetics, autophagy and immunity. Autophagy. 7: 355-74. PMID 20729636 DOI: 10.4161/auto.7.2.13074  1
2010 Cadwell K, Patel KK, Maloney NS, Liu TC, Ng AC, Storer CE, Head RD, Xavier R, Stappenbeck TS, Virgin HW. Virus-plus-susceptibility gene interaction determines Crohn's disease gene Atg16L1 phenotypes in intestine. Cell. 141: 1135-45. PMID 20602997 DOI: 10.1016/j.cell.2010.05.009  1
2010 Edelson BT, KC W, Juang R, Kohyama M, Benoit LA, Klekotka PA, Moon C, Albring JC, Ise W, Michael DG, Bhattacharya D, Stappenbeck TS, Holtzman MJ, Sung SS, Murphy TL, et al. Peripheral CD103+ dendritic cells form a unified subset developmentally related to CD8alpha+ conventional dendritic cells. The Journal of Experimental Medicine. 207: 823-36. PMID 20351058 DOI: 10.1084/jem.20091627  1
2010 Hamm CM, Reimers MA, McCullough CK, Gorbe EB, Lu J, Gu CC, Li E, Dieckgraefe BK, Gong Q, Stappenbeck TS, Stone CD, Dietz DW, Hunt SR. NOD2 status and human ileal gene expression. Inflammatory Bowel Diseases. 16: 1649-57. PMID 20155851 DOI: 10.1002/ibd.21208  1
2010 Walker MR, Brown SL, Riehl TE, Stenson WF, Stappenbeck TS. Growth factor regulation of prostaglandin-endoperoxide synthase 2 (Ptgs2) expression in colonic mesenchymal stem cells. The Journal of Biological Chemistry. 285: 5026-39. PMID 20018844 DOI: 10.1074/jbc.M109.032672  1
2010 Stappenbeck TS. The role of autophagy in Paneth cell differentiation and secretion Mucosal Immunology. 3: 8-10. PMID 19890269 DOI: 10.1038/mi.2009.121  1
2009 Cadwell K, Stappenbeck TS, Virgin HW. Role of autophagy and autophagy genes in inflammatory bowel disease. Current Topics in Microbiology and Immunology. 335: 141-67. PMID 19802564 DOI: 10.1007/978-3-642-00302-8_7  1
2009 Stappenbeck TS, Miyoshi H. The role of stromal stem cells in tissue regeneration and wound repair. Science (New York, N.Y.). 324: 1666-9. PMID 19556498 DOI: 10.1126/science.1172687  1
2009 Stappenbeck TS. Paneth cell development, differentiation, and function: new molecular cues. Gastroenterology. 137: 30-3. PMID 19497398 DOI: 10.1053/j.gastro.2009.05.013  1
2009 Lee G, White LS, Hurov KE, Stappenbeck TS, Piwnica-Worms H. Response of small intestinal epithelial cells to acute disruption of cell division through CDC25 deletion. Proceedings of the National Academy of Sciences of the United States of America. 106: 4701-6. PMID 19273838 DOI: 10.1073/pnas.0900751106  1
2009 Cadwell K, Patel KK, Komatsu M, Virgin HW, Stappenbeck TS. A common role for Atg16L1, Atg5 and Atg7 in small intestinal Paneth cells and Crohn disease. Autophagy. 5: 250-2. PMID 19139628 DOI: 10.4161/auto.5.2.7560  1
2009 Liu JY, Seno H, Miletic AV, Mills JC, Swat W, Stappenbeck TS. Vav proteins are necessary for correct differentiation of mouse cecal and colonic enterocytes. Journal of Cell Science. 122: 324-34. PMID 19139088 DOI: 10.1242/jcs.033720  1
2009 Seno H, Miyoshi H, Brown SL, Geske MJ, Colonna M, Stappenbeck TS. Efficient colonic mucosal wound repair requires Trem2 signaling. Proceedings of the National Academy of Sciences of the United States of America. 106: 256-61. PMID 19109436 DOI: 10.1073/pnas.0803343106  1
2009 Walker MR, Patel KK, Stappenbeck TS. The stem cell niche. The Journal of Pathology. 217: 169-80. PMID 19089901 DOI: 10.1002/path.2474  1
2008 Cadwell K, Liu JY, Brown SL, Miyoshi H, Loh J, Lennerz JK, Kishi C, Kc W, Carrero JA, Hunt S, Stone CD, Brunt EM, Xavier RJ, Sleckman BP, Li E, ... ... Stappenbeck TS, et al. A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells. Nature. 456: 259-63. PMID 18849966 DOI: 10.1038/nature07416  1
2008 Geske MJ, Zhang X, Patel KK, Ornitz DM, Stappenbeck TS. Fgf9 signaling regulates small intestinal elongation and mesenchymal development. Development (Cambridge, England). 135: 2959-68. PMID 18653563 DOI: 10.1242/dev.020453  1
2008 Mahoney ZX, Stappenbeck TS, Miner JH. Laminin alpha 5 influences the architecture of the mouse small intestine mucosa. Journal of Cell Science. 121: 2493-502. PMID 18628307 DOI: 10.1242/jcs.025528  1
2008 Doherty JM, Geske MJ, Stappenbeck TS, Mills JC. Diverse adult stem cells share specific higher-order patterns of gene expression. Stem Cells (Dayton, Ohio). 26: 2124-30. PMID 18511597 DOI: 10.1634/stemcells.2008-0380  1
2008 Kang SS, Bloom SM, Norian LA, Geske MJ, Flavell RA, Stappenbeck TS, Allen PM. An antibiotic-responsive mouse model of fulminant ulcerative colitis. Plos Medicine. 5: e41. PMID 18318596 DOI: 10.1371/journal.pmed.0050041  1
2008 Walker MR, Stappenbeck TS. Deciphering the 'black box' of the intestinal stem cell niche: taking direction from other systems. Current Opinion in Gastroenterology. 24: 115-20. PMID 18301259 DOI: 10.1097/MOG.0b013e3282f4954f  1
2007 Vooijs M, Ong CT, Hadland B, Huppert S, Liu Z, Korving J, van den Born M, Stappenbeck T, Wu Y, Clevers H, Kopan R. Mapping the consequence of Notch1 proteolysis in vivo with NIP-CRE. Development (Cambridge, England). 134: 535-44. PMID 17215306 DOI: 10.1242/dev.02733  1
2007 Brown SL, Riehl TE, Walker MR, Geske MJ, Doherty JM, Stenson WF, Stappenbeck TS. Myd88-dependent positioning of Ptgs2-expressing stromal cells maintains colonic epithelial proliferation during injury. The Journal of Clinical Investigation. 117: 258-69. PMID 17200722 DOI: 10.1172/JCI29159  1
2007 Ramsey VG, Doherty JM, Chen CC, Stappenbeck TS, Konieczny SF, Mills JC. The maturation of mucus-secreting gastric epithelial progenitors into digestive-enzyme secreting zymogenic cells requires Mist1. Development (Cambridge, England). 134: 211-22. PMID 17164426 DOI: 10.1242/dev.02700  1
2006 Mahoney ZX, Sammut B, Xavier RJ, Cunningham J, Go G, Brim KL, Stappenbeck TS, Miner JH, Swat W. Discs-large homolog 1 regulates smooth muscle orientation in the mouse ureter. Proceedings of the National Academy of Sciences of the United States of America. 103: 19872-7. PMID 17172448 DOI: 10.1073/pnas.0609326103  1
2006 Giannakis M, Stappenbeck TS, Mills JC, Leip DG, Lovett M, Clifton SW, Ippolito JE, Glasscock JI, Arumugam M, Brent MR, Gordon JI. Molecular properties of adult mouse gastric and intestinal epithelial progenitors in their niches. The Journal of Biological Chemistry. 281: 11292-300. PMID 16464855 DOI: 10.1074/jbc.M512118200  1
2006 Zhang X, Stappenbeck TS, White AC, Lavine KJ, Gordon JI, Ornitz DM. Reciprocal epithelial-mesenchymal FGF signaling is required for cecal development. Development (Cambridge, England). 133: 173-80. PMID 16308329 DOI: 10.1242/dev.02175  1
2005 Pull SL, Doherty JM, Mills JC, Gordon JI, Stappenbeck TS. Activated macrophages are an adaptive element of the colonic epithelial progenitor niche necessary for regenerative responses to injury. Proceedings of the National Academy of Sciences of the United States of America. 102: 99-104. PMID 15615857 DOI: 10.1073/pnas.0405979102  1
2003 Mills JC, Andersson N, Stappenbeck TS, Chen CC, Gordon JI. Molecular characterization of mouse gastric zymogenic cells. The Journal of Biological Chemistry. 278: 46138-45. PMID 12963718 DOI: 10.1074/jbc.M308385200  1
2003 Gordon JI, Stappenbeck TS, Hooper LV. Response from Jeffrey I. Gordon et al.: Commensal bacteria make a difference. Trends in Microbiology. 11: 150-1. PMID 12706987 DOI: 10.1016/S0966-842X(03)00044-1  1
2003 Stappenbeck TS, Mills JC, Gordon JI. Molecular features of adult mouse small intestinal epithelial progenitors. Proceedings of the National Academy of Sciences of the United States of America. 100: 1004-9. PMID 12552106 DOI: 10.1073/pnas.242735899  1
2003 Hooper LV, Stappenbeck TS, Hong CV, Gordon JI. Angiogenins: a new class of microbicidal proteins involved in innate immunity. Nature Immunology. 4: 269-73. PMID 12548285 DOI: 10.1038/ni888  1
2002 Stappenbeck TS, Hooper LV, Gordon JI. Developmental regulation of intestinal angiogenesis by indigenous microbes via Paneth cells. Proceedings of the National Academy of Sciences of the United States of America. 99: 15451-5. PMID 12432102 DOI: 10.1073/pnas.202604299  1
2002 Stappenbeck TS, Hooper LV, Manchester JK, Wong MH, Gordon JI. Laser capture microdissection of mouse intestine: characterizing mRNA and protein expression, and profiling intermediary metabolism in specified cell populations. Methods in Enzymology. 356: 167-96. PMID 12418197 DOI: 10.1016/S0076-6879(02)56932-9  1
2002 Mills JC, Andersson N, Hong CV, Stappenbeck TS, Gordon JI. Molecular characterization of mouse gastric epithelial progenitor cells. Proceedings of the National Academy of Sciences of the United States of America. 99: 14819-24. PMID 12409607 DOI: 10.1073/pnas.192574799  1
2002 Hooper LV, Mills JC, Roth KA, Stappenbeck TS, Wong MH, Gordon JI. 29 Combining gnotobiotic mouse models with functional genomics to define the impact of the microflora on host physiology Methods in Microbiology. 31: 559-589.  1
2001 Stappenbeck TS, Gordon JI. Extranuclear sequestration of phospho-Jun N-terminal kinase and distorted villi produced by activated Rac1 in the intestinal epithelium of chimeric mice Development. 128: 2603-2614. PMID 11493576  1
2001 Hurov JB, Stappenbeck TS, Zmasek CM, White LS, Ranganath SH, Russell JH, Chan AC, Murphy KM, Piwnica-Worms H. Immune system dysfunction and autoimmune disease in mice lacking Emk (Par-1) protein kinase. Molecular and Cellular Biology. 21: 3206-19. PMID 11287624 DOI: 10.1128/MCB.21.9.3206-3219.2001  1
2000 Wong MH, Saam JR, Stappenbeck TS, Rexer CH, Gordon JI. Genetic mosaic analysis based on Cre recombinase and navigated laser capture microdissection Proceedings of the National Academy of Sciences of the United States of America. 97: 12601-12606. PMID 11050178 DOI: 10.1073/pnas.230237997  1
1999 Wong MH, Stappenbeck TS, Gordon JI. Living and commuting in intestinal crypts Gastroenterology. 116: 208-210. PMID 9869619 DOI: 10.1016/S0016-5085(99)70245-3  1
1998 Stappenbeck TS, Wong MH, Saam JR, Mysorekar IU, Gordon JI. Notes from some crypt watchers: regulation of renewal in the mouse intestinal epithelium. Current Opinion in Cell Biology. 10: 702-9. PMID 9914172 DOI: 10.1016/S0955-0674(98)80110-5  1
1996 Bornslaeger EA, Corcoran CM, Stappenbeck TS, Green KJ. Breaking the connection: Displacement of the desmosomal plaque protein desmoplakin from cell-cell interfaces disrupts anchorage of intermediate filament bundles and alters intercellular junction assembly Journal of Cell Biology. 134: 985-1001. PMID 8769422  1
1994 Kowalczyk AP, Stappenbeck TS, Parry DA, Palka HL, Virata ML, Bornslaeger EA, Nilles LA, Green KJ. Structure and function of desmosomal transmembrane core and plaque molecules. Biophysical Chemistry. 50: 97-112. PMID 8011944 DOI: 10.1016/0301-4622(94)85023-2  1
1994 Stappenbeck TS, Lamb JA, Corcoran CM, Green KJ. Phosphorylation of the desmoplakin COOH terminus negatively regulates its interaction with keratin intermediate filament networks Journal of Biological Chemistry. 269: 29351-29354. PMID 7525582  1
1993 Stappenbeck TS, Bornslaeger EA, Corcoran CM, Luu HH, Virata MLA, Green KJ. Functional analysis of desmoplakin domains: Specification of the interaction with keratin versus vimentin intermediate filament networks Journal of Cell Biology. 123: 691-705. PMID 7693716  1
1992 Stappenbeck TS, Green KJ. The desmoplakin carboxyl terminus coaligns with and specifically disrupts intermediate filament networks when expressed in cultured cells Journal of Cell Biology. 116: 1197-1209. PMID 1740472  1
1992 Green KJ, Stappenbeck TS, Parry DAD, Virata MLA. Structure of desmoplakin and its association with intermediate filaments Journal of Dermatology. 19: 765-769. PMID 1293163  1
1991 Green KJ, Stappenbeck TS, Noguchi S, Oyasu R, Nilles LA. Desmoplakin expression and distribution in cultured rat bladder epithelial cells of varying tumorigenic potential Experimental Cell Research. 193: 134-143. PMID 1995289 DOI: 10.1016/0014-4827(91)90547-8  1
1988 Krieger NS, Stappenbeck TS, Stern PH. Characterization of specific thyroid hormone receptors in bone Journal of Bone and Mineral Research. 3: 473-478. PMID 3223358  1
1987 Krieger NS, Stappenbeck TS, Stern PH. Cardiotonic agent milrinone stimulates resorption in rodent bone organ culture Journal of Clinical Investigation. 79: 444-448. PMID 3027124  1
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