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Vishwanath Jogini - Publications

Affiliations: 
D. E. Shaw Research, New York, NY, United States 
Area:
Potassium channel, Molecular dynamics simulations
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Koldsø H, Jensen MØ, Jogini V, Shaw DE. Functional dynamics and allosteric modulation of TRPA1. Structure (London, England : 1993). PMID 37729917 DOI: 10.1016/j.str.2023.08.018  0.503
2022 Jogini V, Jensen MØ, Shaw DE. Gating and modulation of an inward-rectifier potassium channel. The Journal of General Physiology. 155. PMID 36524993 DOI: 10.1085/jgp.202213085  0.601
2021 Unterweger AL, Jensen MØ, Giordanetto F, Jogini V, Rüschher A, Seuß M, Winkelmann P, Koletzko L, Shaw DE, Siebeck M, Gropp R, Beigel F, Aszodi A. Suppressing Kv1.3 Ion Channel Activity with a Novel Small Molecule Inhibitor Ameliorates Inflammation in a Humanized Mouse Model of Ulcerative Colitis. Journal of Crohn's & Colitis. PMID 33891001 DOI: 10.1093/ecco-jcc/jjab078  0.301
2018 Song X, Jensen MØ, Jogini V, Stein RA, Lee CH, Mchaourab HS, Shaw DE, Gouaux E. Mechanism of NMDA receptor channel block by MK-801 and memantine. Nature. PMID 29670280 DOI: 10.1038/S41586-018-0039-9  0.368
2013 Jensen MØ, Jogini V, Eastwood MP, Shaw DE. Atomic-level simulation of current-voltage relationships in single-file ion channels. The Journal of General Physiology. 141: 619-32. PMID 23589581 DOI: 10.1085/Jgp.201210820  0.384
2012 Li Q, Jogini V, Wanderling S, Cortes DM, Perozo E. Expression, purification, and reconstitution of the voltage-sensing domain from Ci-VSP. Biochemistry. 51: 8132-42. PMID 22989304 DOI: 10.1021/Bi300980Q  0.632
2012 Raghuraman H, Cordero-Morales JF, Jogini V, Pan AC, Kollewe A, Roux B, Perozo E. Mechanism of Cd2+ coordination during slow inactivation in potassium channels. Structure (London, England : 1993). 20: 1332-42. PMID 22771214 DOI: 10.1016/J.Str.2012.03.027  0.82
2012 Jensen MØ, Jogini V, Borhani DW, Leffler AE, Dror RO, Shaw DE. Mechanism of voltage gating in potassium channels. Science (New York, N.Y.). 336: 229-33. PMID 22499946 DOI: 10.1126/science.1216533  0.464
2011 Cordero-Morales JF, Jogini V, Chakrapani S, Perozo E. A multipoint hydrogen-bond network underlying KcsA C-type inactivation. Biophysical Journal. 100: 2387-93. PMID 21575572 DOI: 10.1016/J.Bpj.2011.01.073  0.855
2011 Chakrapani S, Cordero-Morales JF, Jogini V, Pan AC, Cortes DM, Roux B, Perozo E. On the structural basis of modal gating behavior in K(+) channels. Nature Structural & Molecular Biology. 18: 67-74. PMID 21186363 DOI: 10.1038/Nsmb.1968  0.857
2011 Cordero-Morales JF, Jogini V, Vasquez V, Bourdeau RW, Yu H, Roux B, Tristani-Firouzi M, Perozo E. Engineering the hERG1 Selectivity Filter into the NaK Pore Domain Biophysical Journal. 100: 584a. DOI: 10.1016/J.Bpj.2010.12.3372  0.812
2011 Cordero-Morales JF, Jogini V, Lewis A, Vasquez V, Medovoy D, Tristani-Firouzi M, Perozo E. Structural Basis of an Inherited hERG1 Long QT Mutant Biophysical Journal. 100: 426a. DOI: 10.1016/J.Bpj.2010.12.2517  0.799
2010 Contreras JE, Chen J, Lau AY, Jogini V, Roux B, Holmgren M. Voltage profile along the permeation pathway of an open channel. Biophysical Journal. 99: 2863-9. PMID 21044583 DOI: 10.1016/J.Bpj.2010.08.053  0.654
2010 Dalmas O, Cuello LG, Jogini V, Cortes DM, Roux B, Perozo E. Structural dynamics of the magnesium-bound conformation of CorA in a lipid bilayer. Structure (London, England : 1993). 18: 868-78. PMID 20637423 DOI: 10.1016/J.Str.2010.04.009  0.773
2010 Cuello LG, Jogini V, Cortes DM, Pan AC, Gagnon DG, Dalmas O, Cordero-Morales JF, Chakrapani S, Roux B, Perozo E. Structural basis for the coupling between activation and inactivation gates in K(+) channels. Nature. 466: 272-5. PMID 20613845 DOI: 10.1038/Nature09136  0.833
2010 Cuello LG, Jogini V, Cortes DM, Perozo E. Structural mechanism of C-type inactivation in K(+) channels. Nature. 466: 203-8. PMID 20613835 DOI: 10.1038/Nature09153  0.864
2010 Khalili-Araghi F, Jogini V, Yarov-Yarovoy V, Tajkhorshid E, Roux B, Schulten K. Calculation of the gating charge for the Kv1.2 voltage-activated potassium channel. Biophysical Journal. 98: 2189-98. PMID 20483327 DOI: 10.1016/J.Bpj.2010.02.056  0.525
2010 Jensen MØ, Borhani DW, Lindorff-Larsen K, Maragakis P, Jogini V, Eastwood MP, Dror RO, Shaw DE. Principles of conduction and hydrophobic gating in K+ channels. Proceedings of the National Academy of Sciences of the United States of America. 107: 5833-8. PMID 20231479 DOI: 10.1073/Pnas.0911691107  0.64
2010 Cuello LG, Jogini V, Cortes DM, Sompornpisut A, Purdy MD, Wiener MC, Perozo E. Design and characterization of a constitutively open KcsA. Febs Letters. 584: 1133-8. PMID 20153331 DOI: 10.1016/J.Febslet.2010.02.015  0.773
2010 Cuello LG, Cortes DM, Jogini V, Sompornpisut A, Perozo E. A molecular mechanism for proton-dependent gating in KcsA. Febs Letters. 584: 1126-32. PMID 20138880 DOI: 10.1016/J.Febslet.2010.02.003  0.75
2010 Pan AC, Chakrapani S, Jogini V, Cuello LG, Cortes DM, Perozo E, Roux B. The Importance of Ion Binding for Potassium Channel Inactivation and Recovery Biophysical Journal. 98: 621a. DOI: 10.1016/J.Bpj.2009.12.3400  0.854
2010 Khalili-Araghi F, Jogini V, Yarov-Yarovoy V, Tajkhorshid E, Roux B, Schulten K. Refinement and Validation of Atomic Models of the Kv1.2 Potassium Channel Through Molecular Dynamics and Gating Charge Calculations Biophysical Journal. 98: 520a-521a. DOI: 10.1016/J.Bpj.2009.12.2830  0.478
2010 Chakrapani S, Jogini V, Perozo E. Effect of Altered Ion Occupancy on Permeation and Inactivation Gating in K+ Channel Biophysical Journal. 98: 520a. DOI: 10.1016/J.BPJ.2009.12.2828  0.82
2009 Khalili-Araghi F, Jogini V, Yarov-Yarovoy V, Tajkhorshid E, Roux B, Schulten K. Molecular Dynamics Simulation of the Kv1.2 Potassium Channel Biophysical Journal. 96: 191a-192a. DOI: 10.1016/J.Bpj.2008.12.899  0.535
2009 Cordero-Morales JF, Jogini V, Lewis A, Vasquez V, Tristani-Firouzi M, Perozo E. On the Nature of hERG Inactivation using KcsA, Shaker and Kv1.2 as Structural and Functional Models Biophysical Journal. 96: 188a-189a. DOI: 10.1016/J.Bpj.2008.12.885  0.87
2009 Chakrapani S, Jogini V, Cuello LG, Cortes M, Perozo E. On the Structure-Function correlates of Ion Occupancy and modulation of C-type Inactivation Biophysical Journal. 96: 657a. DOI: 10.1016/J.Bpj.2008.12.3471  0.861
2009 Pan AC, Jogini V, Cuello LG, Cortes D, Perozo E, Roux B. Free Energy Landscape for the Inactivation of the KcsA Potassium Channel Biophysical Journal. 96: 657a. DOI: 10.1016/J.Bpj.2008.12.3469  0.833
2009 Raghuraman H, Cordero-Morales JF, Jogini V, Perozo E. Gating-related Structural Dynamics in the Outer Vestibule of KcsA: A Functional and Spectroscopic Analysis Biophysical Journal. 96: 394a. DOI: 10.1016/J.Bpj.2008.12.2932  0.811
2009 Cuello LG, Jogini V, Cortes DM, Pan AC, Gagnon DG, Cordero-Morales JF, Chakrapani S, Roux B, Perozo E. Structural Basis For The Coupling Between Activation And Inactivation Gating In Potassium Channels Biophysical Journal. 96: 381a. DOI: 10.1016/J.Bpj.2008.12.2852  0.849
2009 Uysal S, Cuello LG, Jogini V, Cortes DM, Koide S, Perozo E, Kossiakoff A. Crystal Structure Of Full-length Kcsa Trapped In Open Conformation Reveals That C-terminal Domain Fine Tunes Activation And Coupled Inactivation Biophysical Journal. 96: 370a. DOI: 10.1016/J.Bpj.2008.12.1994  0.787
2008 Lewis A, Jogini V, Blachowicz L, Lainé M, Roux B. Atomic constraints between the voltage sensor and the pore domain in a voltage-gated K+ channel of known structure. The Journal of General Physiology. 131: 549-61. PMID 18504314 DOI: 10.1085/Jgp.200809962  0.549
2007 Cordero-Morales JF, Jogini V, Lewis A, Vásquez V, Cortes DM, Roux B, Perozo E. Molecular driving forces determining potassium channel slow inactivation. Nature Structural & Molecular Biology. 14: 1062-9. PMID 17922012 DOI: 10.1038/Nsmb1309  0.857
2007 Jogini V, Roux B. Dynamics of the Kv1.2 voltage-gated K+ channel in a membrane environment. Biophysical Journal. 93: 3070-82. PMID 17704179 DOI: 10.1529/Biophysj.107.112540  0.495
2007 Faraldo-Gómez JD, Kutluay E, Jogini V, Zhao Y, Heginbotham L, Roux B. Mechanism of intracellular block of the KcsA K+ channel by tetrabutylammonium: insights from X-ray crystallography, electrophysiology and replica-exchange molecular dynamics simulations. Journal of Molecular Biology. 365: 649-62. PMID 17070844 DOI: 10.1016/J.Jmb.2006.09.069  0.638
2007 Jogini V, Roux B. Corrigendum to "Electrostatics of the Intracellular Vestibule of K+ Channels" [J. Mol. Biol. 354 (2006) 272-288] (DOI:10.1016/j.jmb.2005.09.031) Journal of Molecular Biology. 373: 1374. DOI: 10.1016/J.Jmb.2005.09.102  0.524
2006 Cordero-Morales JF, Cuello LG, Zhao Y, Jogini V, Cortes DM, Roux B, Perozo E. Molecular determinants of gating at the potassium-channel selectivity filter. Nature Structural & Molecular Biology. 13: 311-8. PMID 16532009 DOI: 10.1038/Nsmb1069  0.868
2005 Jogini V, Roux B. Electrostatics of the intracellular vestibule of K+ channels. Journal of Molecular Biology. 354: 272-88. PMID 16242718 DOI: 10.1016/J.Jmb.2005.09.031  0.627
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