| Year |
Citation |
Score |
| 2024 |
Laosuntisuk K, Vennapusa A, Somayanda IM, Leman AR, Jagadish SK, Doherty CJ. A normalization method that controls for total RNA abundance affects the identification of differentially expressed genes, revealing bias toward morning-expressed responses. The Plant Journal : For Cell and Molecular Biology. PMID 38289828 DOI: 10.1111/tpj.16654 |
0.313 |
|
| 2023 |
Yow AG, Laosuntisuk K, Young RA, Doherty CJ, Gillitt N, Perkins-Veazie P, Jenny Xiang QY, Iorizzo M. Comparative transcriptome analysis reveals candidate genes for cold stress response and early flowering in pineapple. Scientific Reports. 13: 18890. PMID 37919298 DOI: 10.1038/s41598-023-45722-y |
0.371 |
|
| 2023 |
Horvath DP, Doherty CJ, Desai J, Clark N, Anderson JV, Chao WS. Weed-induced changes in the maize root transcriptome reveal transcription factors and physiological processes impacted early in crop-weed interactions. Aob Plants. 15: plad013. PMID 37228420 DOI: 10.1093/aobpla/plad013 |
0.409 |
|
| 2022 |
Laosuntisuk K, Elorriaga E, Doherty CJ. The Game of Timing: Circadian Rhythms Intersect with Changing Environments. Annual Review of Plant Biology. PMID 36854482 DOI: 10.1146/annurev-arplant-070522-065329 |
0.333 |
|
| 2022 |
Laosuntisuk K, Doherty CJ. The intersection between circadian and heat-responsive regulatory networks controls plant responses to increasing temperatures. Biochemical Society Transactions. 50: 1151-1165. PMID 35758233 DOI: 10.1042/BST20190572 |
0.343 |
|
| 2022 |
Tolsma JS, Torres JJ, Richards JT, Perera IY, Doherty CJ. Evaluating the Effects of the Circadian Clock and Time of Day on Plant Gravitropic Responses. Methods in Molecular Biology (Clifton, N.J.). 2368: 301-319. PMID 34647263 DOI: 10.1007/978-1-0716-1677-2_19 |
0.374 |
|
| 2021 |
Sheppard J, Land ES, Toennisson TA, Doherty CJ, Perera IY. Uncovering Transcriptional Responses to Fractional Gravity in Roots. Life (Basel, Switzerland). 11. PMID 34685382 DOI: 10.3390/life11101010 |
0.412 |
|
| 2021 |
Desai JS, Lawas LMF, Valente AM, Leman AR, Grinevich DO, Jagadish SVK, Doherty CJ. Warm nights disrupt transcriptome rhythms in field-grown rice panicles. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34155145 DOI: 10.1073/pnas.2025899118 |
0.429 |
|
| 2021 |
Bheemanahalli R, Knight M, Quinones C, Doherty CJ, Jagadish SVK. Genome-wide association study and gene network analyses reveal potential candidate genes for high night temperature tolerance in rice. Scientific Reports. 11: 6747. PMID 33762605 DOI: 10.1038/s41598-021-85921-z |
0.31 |
|
| 2019 |
Grinevich DO, Desai JS, Stroup KP, Duan J, Slabaugh E, Doherty CJ. Novel transcriptional responses to heat revealed by turning up the heat at night. Plant Molecular Biology. PMID 31062216 DOI: 10.1007/S11103-019-00873-3 |
0.406 |
|
| 2019 |
Moghimi N, Desai JS, Bheemanahalli R, Impa SM, Vennapusa AR, Sebela D, Perumal R, Doherty CJ, Jagadish SVK. New candidate loci and marker genes on chromosome 7 for improved chilling tolerance in sorghum. Journal of Experimental Botany. PMID 30949711 DOI: 10.1093/Jxb/Erz143 |
0.447 |
|
| 2019 |
Slabaugh E, Desai JS, Sartor RC, Lawas LMF, Jagadish SK, Doherty C. Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome. Rna (New York, N.Y.). PMID 30872414 DOI: 10.1261/Rna.070227.118 |
0.356 |
|
| 2019 |
Liebelt DJ, Jordan JT, Doherty CJ. Only a matter of time: the impact of daily and seasonal rhythms on phytochemicals Phytochemistry Reviews. 18: 1409-1433. DOI: 10.1007/S11101-019-09617-Z |
0.425 |
|
| 2018 |
Desai JS, Slabaugh E, Liebelt DJ, Fredenberg JD, Gray BN, Jagadish SVK, Wilkins O, Doherty CJ. Neural Net Classification Combined With Movement Analysis to Evaluate as a Model System for Time of Day of Anther Appearance. Frontiers in Plant Science. 9: 1585. PMID 30429868 DOI: 10.3389/Fpls.2018.01585 |
0.383 |
|
| 2017 |
Desai JS, Sartor RC, Lawas LM, Jagadish SVK, Doherty CJ. Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes. Scientific Reports. 7: 17244. PMID 29222512 DOI: 10.1038/S41598-017-17143-1 |
0.421 |
|
| 2017 |
Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, et al. The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant Physiology. 175: 1499-1509. PMID 29208732 DOI: 10.1104/Pp.17.01490 |
0.668 |
|
| 2017 |
Shani E, Salehin M, Zhang Y, Sanchez SE, Doherty C, Wang R, Mangado CC, Song L, Tal I, Pisanty O, Ecker JR, Kay SA, Pruneda-Paz J, Estelle M. Plant Stress Tolerance Requires Auxin-Sensitive Aux/IAA Transcriptional Repressors. Current Biology : Cb. PMID 28111153 DOI: 10.1016/J.Cub.2016.12.016 |
0.723 |
|
| 2015 |
Nagel DH, Doherty CJ, Pruneda-Paz JL, Schmitz RJ, Ecker JR, Kay SA. Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 112: E4802-10. PMID 26261339 DOI: 10.1073/Pnas.1513609112 |
0.682 |
|
| 2015 |
Park S, Lee CM, Doherty CJ, Gilmour SJ, Kim Y, Thomashow MF. Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network. The Plant Journal : For Cell and Molecular Biology. 82: 193-207. PMID 25736223 DOI: 10.1111/Tpj.12796 |
0.733 |
|
| 2014 |
Pruneda-Paz JL, Breton G, Nagel DH, Kang SE, Bonaldi K, Doherty CJ, Ravelo S, Galli M, Ecker JR, Kay SA. A genome-scale resource for the functional characterization of Arabidopsis transcription factors. Cell Reports. 8: 622-32. PMID 25043187 DOI: 10.1016/J.Celrep.2014.06.033 |
0.741 |
|
| 2012 |
Jaeger PA, Doherty C, Ideker T. Modeling transcriptome dynamics in a complex world. Cell. 151: 1161-2. PMID 23217702 DOI: 10.1016/J.Cell.2012.11.031 |
0.402 |
|
| 2012 |
Doherty CJ, Kay SA. Circadian surprise--it's not all about transcription. Science (New York, N.Y.). 338: 338-40. PMID 23087238 DOI: 10.1126/Science.1230008 |
0.598 |
|
| 2012 |
Lai AG, Doherty CJ, Mueller-Roeber B, Kay SA, Schippers JH, Dijkwel PP. CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses. Proceedings of the National Academy of Sciences of the United States of America. 109: 17129-34. PMID 23027948 DOI: 10.1073/Pnas.1209148109 |
0.635 |
|
| 2012 |
Gendron JM, Pruneda-Paz JL, Doherty CJ, Gross AM, Kang SE, Kay SA. Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor. Proceedings of the National Academy of Sciences of the United States of America. 109: 3167-72. PMID 22315425 DOI: 10.1073/Pnas.1200355109 |
0.716 |
|
| 2011 |
Carvallo MA, Pino MT, Jeknic Z, Zou C, Doherty CJ, Shiu SH, Chen TH, Thomashow MF. A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana. Journal of Experimental Botany. 62: 3807-19. PMID 21511909 DOI: 10.1093/Jxb/Err066 |
0.671 |
|
| 2010 |
Doherty CJ, Kay SA. Circadian control of global gene expression patterns. Annual Review of Genetics. 44: 419-44. PMID 20809800 DOI: 10.1146/Annurev-Genet-102209-163432 |
0.622 |
|
| 2009 |
Doherty CJ, Van Buskirk HA, Myers SJ, Thomashow MF. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. The Plant Cell. 21: 972-84. PMID 19270186 DOI: 10.1105/Tpc.108.063958 |
0.704 |
|
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