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Bryan Tracy Nixon - Publications

Affiliations: 
Biochemistry and Molecular Biology Pennsylvania State University, State College, PA, United States 
Area:
Biochemistry
Website:
http://bmb.psu.edu/directory/btn1
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Gopal Vandavasi V, Putnam DK, Zhang Q, Petridis L, Heller WT, Nixon BT, Haigler CH, Kalluri U, Coates L, Langan P, Smith JC, Meiler J, O'Neill H. A Structural Study of CESA1 catalytic domain of Arabidopsis thaliana Cellulose Synthesis Complex: Evidence for CESA trimers. Plant Physiology. PMID 26556795 DOI: 10.1104/Pp.15.01356  0.325
2014 Sysoeva TA, Chowdhury S, Nixon BT. Breaking symmetry in multimeric ATPase motors. Cell Cycle (Georgetown, Tex.). 13: 1509-10. PMID 24755939 DOI: 10.4161/Cc.28957  0.807
2013 Sysoeva TA, Yennawar N, Allaire M, Nixon BT. Crystallization and preliminary X-ray analysis of the ATPase domain of the σ(54)-dependent transcription activator NtrC1 from Aquifex aeolicus bound to the ATP analog ADP-BeFx. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 69: 1384-8. PMID 24316836 DOI: 10.1107/S174430911302976X  0.781
2013 Sysoeva TA, Chowdhury S, Guo L, Nixon BT. Nucleotide-induced asymmetry within ATPase activator ring drives σ54-RNAP interaction and ATP hydrolysis. Genes & Development. 27: 2500-11. PMID 24240239 DOI: 10.1101/Gad.229385.113  0.793
2012 Chakraborty A, Wang D, Ebright YW, Korlann Y, Kortkhonjia E, Kim T, Chowdhury S, Wigneshweraraj S, Irschik H, Jansen R, Nixon BT, Knight J, Weiss S, Ebright RH. Opening and closing of the bacterial RNA polymerase clamp. Science (New York, N.Y.). 337: 591-5. PMID 22859489 DOI: 10.1126/Science.1218716  0.674
2012 Li P, Banjade S, Cheng HC, Kim S, Chen B, Guo L, Llaguno M, Hollingsworth JV, King DS, Banani SF, Russo PS, Jiang QX, Nixon BT, Rosen MK. Phase transitions in the assembly of multivalent signalling proteins. Nature. 483: 336-40. PMID 22398450 DOI: 10.1038/Nature10879  0.493
2011 Nixon BT, Sysoeva TA, Chen B, Chowdhury S, Guo L, De Carlo S, Hanson J, Yang H. AAA+ ATPase Mechanism Biophysical Journal. 100: 38a. DOI: 10.1016/J.Bpj.2010.12.412  0.778
2010 Chen B, Sysoeva TA, Chowdhury S, Guo L, De Carlo S, Hanson JA, Yang H, Nixon BT. Engagement of arginine finger to ATP triggers large conformational changes in NtrC1 AAA+ ATPase for remodeling bacterial RNA polymerase. Structure (London, England : 1993). 18: 1420-30. PMID 21070941 DOI: 10.1016/J.Str.2010.08.018  0.783
2009 Burrows PC, Joly N, Nixon BT, Buck M. Comparative analysis of activator-Esigma54 complexes formed with nucleotide-metal fluoride analogues. Nucleic Acids Research. 37: 5138-50. PMID 19553192 DOI: 10.1093/nar/gkp541  0.452
2009 Burrows PC, Schumacher J, Amartey S, Ghosh T, Burgis TA, Zhang X, Nixon BT, Buck M. Functional roles of the pre-sensor I insertion sequence in an AAA+ bacterial enhancer binding protein. Molecular Microbiology. 73: 519-33. PMID 19486295 DOI: 10.1111/J.1365-2958.2009.06744.X  0.406
2009 Burrows PC, Joly N, Cannon WV, Cámara BP, Rappas M, Zhang X, Dawes K, Nixon BT, Wigneshweraraj SR, Buck M. Coupling sigma factor conformation to RNA polymerase reorganisation for DNA melting. Journal of Molecular Biology. 387: 306-19. PMID 19356588 DOI: 10.1016/J.Jmb.2009.01.052  0.366
2009 Chen B, Sysoeva TA, Chowdhury S, Guo L, Nixon BT. ADPase activity of recombinantly expressed thermotolerant ATPases may be caused by copurification of adenylate kinase of Escherichia coli. The Febs Journal. 276: 807-15. PMID 19143839 DOI: 10.1111/J.1742-4658.2008.06825.X  0.752
2008 Chen B, Sysoeva TA, Chowdhury S, Nixon BT. Regulation and action of the bacterial enhancer-binding protein AAA+ domains. Biochemical Society Transactions. 36: 89-93. PMID 18208392 DOI: 10.1042/Bst0360089  0.782
2007 Doucleff M, Pelton JG, Lee PS, Nixon BT, Wemmer DE. Structural basis of DNA recognition by the alternative sigma-factor, sigma54. Journal of Molecular Biology. 369: 1070-8. PMID 17481658 DOI: 10.1016/J.Jmb.2007.04.019  0.4
2007 Chen B, Doucleff M, Wemmer DE, De Carlo S, Huang HH, Nogales E, Hoover TR, Kondrashkina E, Guo L, Nixon BT. ATP ground- and transition states of bacterial enhancer binding AAA+ ATPases support complex formation with their target protein, sigma54. Structure (London, England : 1993). 15: 429-40. PMID 17437715 DOI: 10.1016/J.Str.2007.02.007  0.64
2006 De Carlo S, Chen B, Hoover TR, Kondrashkina E, Nogales E, Nixon BT. The structural basis for regulated assembly and function of the transcriptional activator NtrC. Genes & Development. 20: 1485-95. PMID 16751184 DOI: 10.1101/Gad.1418306  0.694
2005 Nixon BT, Yennawar HP, Doucleff M, Pelton JG, Wemmer DE, Krueger S, Kondrashkina E. SAS solution structures of the apo and Mg2+/BeF3(-)-bound receiver domain of DctD from Sinorhizobium meliloti. Biochemistry. 44: 13962-9. PMID 16229485 DOI: 10.1021/Bi051129U  0.407
2005 Doucleff M, Chen B, Maris AE, Wemmer DE, Kondrashkina E, Nixon BT. Negative regulation of AAA + ATPase assembly by two component receiver domains: a transcription activation mechanism that is conserved in mesophilic and extremely hyperthermophilic bacteria. Journal of Molecular Biology. 353: 242-55. PMID 16169010 DOI: 10.1016/J.Jmb.2005.08.003  0.665
2004 Xu H, Kelly MT, Nixon BT, Hoover TR. Novel substitutions in the sigma54-dependent activator DctD that increase dependence on upstream activation sequences or uncouple ATP hydrolysis from transcriptional activation. Molecular Microbiology. 54: 32-44. PMID 15458403 DOI: 10.1111/J.1365-2958.2004.04246.X  0.432
2004 Xu H, Gu B, Nixon BT, Hoover TR. Purification and characterization of the AAA+ domain of Sinorhizobium meliloti DctD, a sigma54-dependent transcriptional activator. Journal of Bacteriology. 186: 3499-507. PMID 15150237 DOI: 10.1128/Jb.186.11.3499-3507.2004  0.472
2003 Lee SY, De La Torre A, Yan D, Kustu S, Nixon BT, Wemmer DE. Regulation of the transcriptional activator NtrC1: structural studies of the regulatory and AAA+ ATPase domains. Genes & Development. 17: 2552-63. PMID 14561776 DOI: 10.1101/Gad.1125603  0.491
2003 Wang YK, Park S, Nixon BT, Hoover TR. Nucleotide-dependent conformational changes in the sigma54-dependent activator DctD. Journal of Bacteriology. 185: 6215-9. PMID 14526036 DOI: 10.1128/Jb.185.20.6215-6219.2003  0.679
2002 Park S, Meyer M, Jones AD, Yennawar HP, Yennawar NH, Nixon BT. Two-component signaling in the AAA + ATPase DctD: binding Mg2+ and BeF3- selects between alternate dimeric states of the receiver domain. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 16: 1964-6. PMID 12368235 DOI: 10.1096/Fj.02-0395Fje  0.757
2002 Park S, Zhang H, Jones AD, Nixon BT. Biochemical evidence for multiple dimeric states of the Sinorhizobium meliloti DctD receiver domain. Biochemistry. 41: 10934-41. PMID 12206664 DOI: 10.1021/Bi0260031  0.633
2001 Slatko B, Heinrich P, Nixon BT, Voytas D. Constructing nested deletions for use in DNA sequencing. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit7.2. PMID 18265265 DOI: 10.1002/0471142727.Mb0702S16  0.479
2001 Meyer MG, Park S, Zeringue L, Staley M, McKinstry M, Kaufman RI, Zhang H, Yan D, Yennawar N, Yennawar H, Farber GK, Nixon BT. A dimeric two-component receiver domain inhibits the sigma54-dependent ATPase in DctD. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 15: 1326-8. PMID 11344129 DOI: 10.1096/Fj.00-0516Fje  0.756
1999 Sojda J, Gu B, Lee J, Hoover TR, Nixon BT. A rhizobial homolog of IHF stimulates transcription of dctA in Rhizobium leguminosarum but not in Sinorhizobium meliloti. Gene. 238: 489-500. PMID 10570977 DOI: 10.1016/S0378-1119(99)00366-2  0.306
1994 Lee JH, Scholl D, Nixon BT, Hoover TR. Constitutive ATP hydrolysis and transcription activation by a stable, truncated form of Rhizobium meliloti DCTD, a sigma 54-dependent transcriptional activator. The Journal of Biological Chemistry. 269: 20401-9. PMID 8051135  0.424
1994 Gu B, Lee JH, Hoover TR, Scholl D, Nixon BT. Rhizobium meliloti DctD, a sigma 54-dependent transcriptional activator, may be negatively controlled by a subdomain in the C-terminal end of its two-component receiver module. Molecular Microbiology. 13: 51-66. PMID 7984094 DOI: 10.1111/J.1365-2958.1994.Tb00401.X  0.375
1992 Ledebur H, Nixon BT. Tandem DctD-binding sites of the Rhizobium meliloti dctA upstream activating sequence are essential for optimal function despite a 50- to 100-fold difference in affinity for DctD. Molecular Microbiology. 6: 3479-92. PMID 1474893 DOI: 10.1111/j.1365-2958.1992.tb01783.x  0.307
1989 Albright LM, Ronson CW, Nixon BT, Ausubel FM. Identification of a gene linked to Rhizobium meliloti ntrA whose product is homologous to a family to ATP-binding proteins. Journal of Bacteriology. 171: 1932-41. PMID 2703463 DOI: 10.1128/Jb.171.4.1932-1941.1989  0.526
1987 Ronson CW, Astwood PM, Nixon BT, Ausubel FM. Deduced products of C4-dicarboxylate transport regulatory genes of Rhizobium leguminosarum are homologous to nitrogen regulatory gene products. Nucleic Acids Research. 15: 7921-34. PMID 3671068 DOI: 10.1093/Nar/15.19.7921  0.543
1987 Ronson CW, Nixon BT, Ausubel FM. Conserved domains in bacterial regulatory proteins that respond to environmental stimuli. Cell. 49: 579-81. PMID 3555840 DOI: 10.1016/0092-8674(87)90530-7  0.532
1987 Ronson CW, Nixon BT, Albright LM, Ausubel FM. Rhizobium meliloti ntrA (rpoN) gene is required for diverse metabolic functions. Journal of Bacteriology. 169: 2424-31. PMID 3034856 DOI: 10.1128/Jb.169.6.2424-2431.1987  0.456
1987 Szeto WW, Nixon BT, Ronson CW, Ausubel FM. Identification and characterization of the Rhizobium meliloti ntrC gene: R. meliloti has separate regulatory pathways for activation of nitrogen fixation genes in free-living and symbiotic cells. Journal of Bacteriology. 169: 1423-32. PMID 2881918 DOI: 10.1128/Jb.169.4.1423-1432.1987  0.453
1986 Nixon BT, Ronson CW, Ausubel FM. Two-component regulatory systems responsive to environmental stimuli share strongly conserved domains with the nitrogen assimilation regulatory genes ntrB and ntrC. Proceedings of the National Academy of Sciences of the United States of America. 83: 7850-4. PMID 3020561 DOI: 10.1073/Pnas.83.20.7850  0.55
1984 Nixon BT, Green H. Growth hormone promotes the differentiation of myoblasts and preadipocytes generated by azacytidine treatment of 10T1/2 cells. Proceedings of the National Academy of Sciences of the United States of America. 81: 3429-32. PMID 6203122 DOI: 10.1073/pnas.81.11.3429  0.372
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