Zengjian J. Chen - Publications

Cell and Molecular Biology University of Texas at Austin, Austin, Texas, U.S.A. 
General Biology, Genetics

29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Ko DK, Rohozinski D, Song Q, Taylor SH, Juenger TE, Harmon FG, Chen ZJ. Temporal Shift of Circadian-Mediated Gene Expression and Carbon Fixation Contributes to Biomass Heterosis in Maize Hybrids. Plos Genetics. 12: e1006197. PMID 27467757 DOI: 10.1371/Journal.Pgen.1006197  0.52
2015 Kirkbride RC, Yu HH, Nah G, Zhang C, Shi X, Chen ZJ. An epigenetic role for disrupted paternal gene expression in postzygotic seed abortion in Arabidopsis interspecific hybrids. Molecular Plant. PMID 26409189 DOI: 10.1016/J.Molp.2015.09.009  0.52
2015 Miller M, Song Q, Shi X, Juenger TE, Chen ZJ. Natural variation in timing of stress-responsive gene expression predicts heterosis in intraspecific hybrids of Arabidopsis. Nature Communications. 6: 7453. PMID 26154604 DOI: 10.1038/Ncomms8453  0.52
2015 Tuttle JR, Nah G, Duke MV, Alexander DC, Guan X, Song Q, Chen ZJ, Scheffler BE, Haigler CH. Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall synthesis, represses lignification, and prolongs elongation. Bmc Genomics. 16: 477. PMID 26116072 DOI: 10.1186/S12864-015-1708-9  0.52
2015 Kim HJ, Hinchliffe DJ, Triplett BA, Chen ZJ, Stelly DM, Yeater KM, Moon HS, Gilbert MK, Thyssen GN, Turley RB, Fang DD. Phytohormonal networks promote differentiation of fiber initials on pre-anthesis cotton ovules grown in vitro and in planta. Plos One. 10: e0125046. PMID 25927364 DOI: 10.1371/Journal.Pone.0125046  0.52
2014 Tian L, Li X, Ha M, Zhang C, Chen ZJ. Genetic and epigenetic changes in a genomic region containing MIR172 in Arabidopsis allopolyploids and their progenitors. Heredity. 112: 207-14. PMID 24065179 DOI: 10.1038/Hdy.2013.94  0.64
2013 Chen ZJ. Genomic and epigenetic insights into the molecular bases of heterosis Nature Reviews Genetics. 14: 471-482. PMID 23752794 DOI: 10.1038/Nrg3503  0.52
2013 Chen ZJ, Yu HH. Genetic and Epigenetic Mechanisms for Polyploidy and Hybridity Polyploid and Hybrid Genomics. 335-354. DOI: 10.1002/9781118552872.ch21  0.52
2013 Guan X, Chen ZJ. Cotton Fiber Genomics Seed Genomics. 203-216. DOI: 10.1002/9781118525524.ch11  0.52
2011 Kim ED, Chen ZJ. Unstable transcripts in Arabidopsis allotetraploids are associated with nonadditive gene expression in response to abiotic and biotic stresses Plos One. 6. PMID 21897874 DOI: 10.1371/journal.pone.0024251  0.52
2011 Chen ZJ, Guan X. Auxin boost for cotton Nature Biotechnology. 29: 407-409. PMID 21552241 DOI: 10.1038/Nbt.1858  0.52
2011 Ha M, Ng DW, Li WH, Chen ZJ. Coordinated histone modifications are associated with gene expression variation within and between species. Genome Research. 21: 590-8. PMID 21324879 DOI: 10.1101/Gr.116467.110  0.52
2010 Chen ZJ. Molecular mechanisms of polyploidy and hybrid vigor Trends in Plant Science. 15: 57-71. PMID 20080432 DOI: 10.1016/J.Tplants.2009.12.003  0.52
2010 Jackson S, Chen ZJ. Genomic and expression plasticity of polyploidy Current Opinion in Plant Biology. 13: 153-159. PMID 20031477 DOI: 10.1016/j.pbi.2009.11.004  0.52
2009 Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ. Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.). Genome Biology. 10: R122. PMID 19889219 DOI: 10.1186/Gb-2009-10-11-R122  0.52
2009 Ha M, Lu J, Tian L, Ramachandran V, Kasschau KD, Chapman EJ, Carrington JC, Chen X, Wang XJ, Chen ZJ. Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. Proceedings of the National Academy of Sciences of the United States of America. 106: 17835-40. PMID 19805056 DOI: 10.1073/Pnas.0907003106  0.52
2009 Ha M, Kim ED, Chen ZJ. Duplicate genes increase expression diversity in closely related species and allopolyploids. Proceedings of the National Academy of Sciences of the United States of America. 106: 2295-300. PMID 19168631 DOI: 10.1073/Pnas.0807350106  0.52
2009 Ni Z, Kim ED, Ha M, Lackey E, Liu J, Zhang Y, Sun Q, Chen ZJ. Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids. Nature. 457: 327-31. PMID 19029881 DOI: 10.1038/Nature07523  0.64
2008 Chen M, Ha M, Lackey E, Wang J, Chen ZJ. RNAi of met1 reduces DNA methylation and induces genome-specific changes in gene expression and centromeric small RNA accumulation in Arabidopsis allopolyploids. Genetics. 178: 1845-58. PMID 18430920 DOI: 10.1534/Genetics.107.086272  0.64
2008 Ha M, Pang M, Agarwal V, Chen ZJ. Interspecies regulation of microRNAs and their targets. Biochimica Et Biophysica Acta. 1779: 735-42. PMID 18407843 DOI: 10.1016/J.Bbagrm.2008.03.004  0.64
2007 Chen ZJ, Tian L. Roles of dynamic and reversible histone acetylation in plant development and polyploidy Biochimica Et Biophysica Acta - Gene Structure and Expression. 1769: 295-307. PMID 17556080 DOI: 10.1016/J.Bbaexp.2007.04.007  0.52
2007 Chen ZJ, Ha M, Soltis D. Polyploidy: genome obesity and its consequences. The New Phytologist. 174: 717-20. PMID 17504455 DOI: 10.1111/J.1469-8137.2007.02084.X  0.64
2007 Ha M, Li WH, Chen ZJ. External factors accelerate expression divergence between duplicate genes. Trends in Genetics : Tig. 23: 162-6. PMID 17320239 DOI: 10.1016/J.Tig.2007.02.005  0.64
2007 Chen ZJ. Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids Annual Review of Plant Biology. 58: 377-406. PMID 17280525 DOI: 10.1146/annurev.arplant.58.032806.103835  0.52
2006 Chen ZJ, Ni Z. Mechanisms of genomic rearrangements and gene expression changes in plant polyploids Bioessays. 28: 240-252. PMID 16479580 DOI: 10.1002/Bies.20374  0.52
2001 Lee HS, Chen ZJ. Protein-coding genes are epigenetically regulated in Arabidopsis polyploids Proceedings of the National Academy of Sciences of the United States of America. 98: 6753-6758. PMID 11371624 DOI: 10.1073/pnas.121064698  0.52
2001 Tian L, Chen ZJ. Blocking histone deacetylation in Arabidopsis induces pleiotropic effects on plant gene regulation and development Proceedings of the National Academy of Sciences of the United States of America. 98: 200-205. PMID 11134508 DOI: 10.1073/pnas.011347998  0.52
1997 Chen ZJ, Pikaard CS. Epigenetic silencing of RNA polymerase I transcription: A role for DNA methylation and histone modification in nucleolar dominance Genes and Development. 11: 2124-2136. PMID 9284051 DOI: 10.1101/GAD.11.16.2124  0.52
1997 Chen ZJ, Pikaard CS. Transcriptional analysis of nucleolar dominance in polyploid plants: Biased expression/silencing of progenitor rRNA genes is developmentally regulated in Brassica Proceedings of the National Academy of Sciences of the United States of America. 94: 3442-3447. PMID 9096413 DOI: 10.1073/Pnas.94.7.3442  0.52
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