Naomi L. Ward - Publications

Molecular Biology University of Wyoming, Laramie, WY, United States 
Microbiology Biology, Bioinformatics Biology

36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Kamneva OK, Poudel S, Ward NL. Proteins Related to the Type I Secretion System Are Associated with Secondary SecA_DEAD Domain Proteins in Some Species of Planctomycetes, Verrucomicrobia, Proteobacteria, Nitrospirae and Chlorobi. Plos One. 10: e0129066. PMID 26030905 DOI: 10.1371/Journal.Pone.0129066  1
2015 Kamneva OK, Poudel S, Ward NL. Proteins related to the type i secretion system are associated with secondary SecA-DEAD domain proteins in some species of planctomycetes, verrucomicrobia, proteobacteria, nitrospirae and Chlorobi Plos One. 10. DOI: 10.1371/journal.pone.0129066  1
2014 Gottshall EY, Seebart C, Gatlin JC, Ward NL. Spatially segregated transcription and translation in cells of the endomembrane-containing bacterium Gemmata obscuriglobus. Proceedings of the National Academy of Sciences of the United States of America. 111: 11067-72. PMID 25024214 DOI: 10.1073/Pnas.1409187111  1
2014 Devos DP, Ward NL. Mind the PVCs. Environmental Microbiology. 16: 1217-21. PMID 24750535 DOI: 10.1111/1462-2920.12349  1
2014 Kamneva OK, Ward NL. Reconciliation approaches to determining HGT, duplications, and losses in gene trees Methods in Microbiology. 41: 183-199. DOI: 10.1016/Bs.Mim.2014.08.004  1
2014 Kamneva OK, Haft DH, Knight SJ, Liberles DA, Ward NL. Genomics and bioinformatics of the PVC superphylum Planctomycetes: Cell Structure, Origins and Biology. 165-193. DOI: 10.1007/978-1-62703-502-6_7  1
2012 Kamneva OK, Knight SJ, Liberles DA, Ward NL. Analysis of genome content evolution in pvc bacterial super-phylum: assessment of candidate genes associated with cellular organization and lifestyle. Genome Biology and Evolution. 4: 1375-90. PMID 23221607 DOI: 10.1093/Gbe/Evs113  1
2012 Steven B, McCann S, Ward NL. Pyrosequencing of plastid 23S rRNA genes reveals diverse and dynamic cyanobacterial and algal populations in two eutrophic lakes. Fems Microbiology Ecology. 82: 607-15. PMID 22680682 DOI: 10.1111/J.1574-6941.2012.01429.X  1
2012 Ward NL, Pieretti A, Dowd SE, Cox SB, Goldstein AM. Intestinal aganglionosis is associated with early and sustained disruption of the colonic microbiome. Neurogastroenterology and Motility : the Official Journal of the European Gastrointestinal Motility Society. 24: 874-e400. PMID 22626027 DOI: 10.1111/J.1365-2982.2012.01937.X  1
2011 Sait M, Kamneva OK, Fay DS, Kirienko NV, Polek J, Shirasu-Hiza MM, Ward NL. Genomic and Experimental Evidence Suggests that Verrucomicrobium spinosum Interacts with Eukaryotes. Frontiers in Microbiology. 2: 211. PMID 22022322 DOI: 10.3389/Fmicb.2011.00211  1
2011 Campbell MA, Chain PS, Dang H, El Sheikh AF, Norton JM, Ward NL, Ward BB, Klotz MG. Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia-oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names 'Nitrosococcus halophilus' and 'Nitrosomonas mobilis'. Fems Microbiology Ecology. 76: 39-48. PMID 21204874 DOI: 10.1111/J.1574-6941.2010.01027.X  1
2011 Domman DB, Steven BT, Ward NL. Random transposon mutagenesis of Verrucomicrobium spinosum DSM 4136(T). Archives of Microbiology. 193: 307-12. PMID 21184215 DOI: 10.1007/S00203-010-0666-5  1
2011 Steven B, Dowd SE, Schulmeyer KH, Ward NL. Phylum-targeted pyrosequencing reveals diverse planctomycete populations in a eutrophic lake Aquatic Microbial Ecology. 64: 41-49. DOI: 10.3354/Ame01507  1
2010 Ward NL, Klotz MG. Harnessing the power of microbial genomics for exploring exceptions and shifting perceptions. Frontiers in Microbiology. 1: 146. PMID 21687802 DOI: 10.3389/Fmicb.2010.00146  1
2010 Kamneva OK, Liberles DA, Ward NL. Genome-wide influence of indel Substitutions on evolution of bacteria of the PVC superphylum, revealed using a novel computational method. Genome Biology and Evolution. 2: 870-86. PMID 21048002 DOI: 10.1093/Gbe/Evq071  1
2009 Yang JC, Madupu R, Durkin AS, Ekborg NA, Pedamallu CS, Hostetler JB, Radune D, Toms BS, Henrissat B, Coutinho PM, Schwarz S, Field L, Trindade-Silva AE, Soares CA, Elshahawi S, ... ... Ward N, et al. The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms). Plos One. 4: e6085. PMID 19568419 DOI: 10.1371/Journal.Pone.0006085  1
2009 Ward NL, Steven B, Penn K, Methé BA, Detrich WH. Characterization of the intestinal microbiota of two Antarctic notothenioid fish species. Extremophiles : Life Under Extreme Conditions. 13: 679-85. PMID 19472032 DOI: 10.1007/S00792-009-0252-4  1
2009 Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J, Barabote RD, Bradley B, Brettin TS, Brinkac LM, Bruce D, et al. Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Applied and Environmental Microbiology. 75: 2046-56. PMID 19201974 DOI: 10.1128/Aem.02294-08  1
2009 Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham JE, Bryant DA, Robb F, Colman A, Tallon LJ, Badger JH, Madupu R, Ward NL, Eisen JA. Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. Plos One. 4: e4207. PMID 19148287 DOI: 10.1371/Journal.Pone.0004207  1
2008 Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, ... ... Ward N, et al. The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology. 26: 541-7. PMID 18464787 DOI: 10.1038/Nbt1360  1
2007 von Mering C, Hugenholtz P, Raes J, Tringe SG, Doerks T, Jensen LJ, Ward N, Bork P. Quantitative phylogenetic assessment of microbial communities in diverse environments. Science (New York, N.Y.). 315: 1126-30. PMID 17272687 DOI: 10.1126/Science.1133420  1
2006 Badger JH, Hoover TR, Brun YV, Weiner RM, Laub MT, Alexandre G, Mrázek J, Ren Q, Paulsen IT, Nelson KE, Khouri HM, Radune D, Sosa J, Dodson RJ, Sullivan SA, ... ... Ward NL, et al. Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus Journal of Bacteriology. 188: 6841-6850. PMID 16980487 DOI: 10.1128/Jb.00111-06  1
2006 Morales SE, Mouser PJ, Ward N, Hudman SP, Gotelli NJ, Ross DS, Lewis TA. Comparison of bacterial communities in New England Sphagnum bogs using terminal restriction fragment length polymorphism (T-RFLP). Microbial Ecology. 52: 34-44. PMID 16729225 DOI: 10.1007/s00248-005-0264-2  1
2005 Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, Ward NL, Angiuoli SV, Crabtree J, Jones AL, Durkin AS, Deboy RT, Davidsen TM, Mora M, Scarselli M, Margarit y Ros I, et al. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". Proceedings of the National Academy of Sciences of the United States of America. 102: 13950-5. PMID 16172379 DOI: 10.1073/Pnas.0506758102  1
2005 Ward N, Fraser CM. How genomics has affected the concept of microbiology. Current Opinion in Microbiology. 8: 564-71. PMID 16125442 DOI: 10.1016/J.Mib.2005.08.011  1
2005 Badger JH, Eisen JA, Ward NL. Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: implications for the taxonomy of the orders 'Rhodobacterales' and Caulobacterales. International Journal of Systematic and Evolutionary Microbiology. 55: 1021-6. PMID 15879228 DOI: 10.1099/Ijs.0.63510-0  1
2005 Seshadri R, Adrian L, Fouts DE, Eisen JA, Phillippy AM, Methe BA, Ward NL, Nelson WC, Deboy RT, Khouri HM, Kolonay JF, Dodson RJ, Daugherty SC, Brinkac LM, Sullivan SA, et al. Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes. Science (New York, N.Y.). 307: 105-8. PMID 15637277 DOI: 10.1126/Science.1102226  1
2004 Bauer M, Lombardot T, Teeling H, Ward NL, Amann RI, Glöckner FO. Archaea-like genes for C1-transfer enzymes in Planctomycetes: phylogenetic implications of their unexpected presence in this phylum. Journal of Molecular Evolution. 59: 571-86. PMID 15693614 DOI: 10.1007/s00239-004-2643-6  1
2004 Moran MA, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C, Brinkac L, Lewis M, Johri S, Weaver B, Pai G, ... ... Ward N, et al. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature. 432: 910-3. PMID 15602564 DOI: 10.1038/Nature03170  1
2004 Ward N, Larsen Ø, Sakwa J, Bruseth L, Khouri H, Durkin AS, Dimitrov G, Jiang L, Scanlan D, Kang KH, Lewis M, Nelson KE, Methé B, Wu M, Heidelberg JF, et al. Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath). Plos Biology. 2: e303. PMID 15383840 DOI: 10.1371/Journal.Pbio.0020303  1
2004 Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM, Daugherty SC, Deboy RT, Dodson RJ, Durkin AS, Madupu R, et al. The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nature Biotechnology. 22: 554-9. PMID 15077118 DOI: 10.1038/Nbt959  1
2003 Methé BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ, Dodson RJ, Madupu R, Brinkac LM, Daugherty SC, DeBoy RT, et al. Genome of Geobacter sulfurreducens: metal reduction in subsurface environments. Science (New York, N.Y.). 302: 1967-9. PMID 14671304 DOI: 10.1126/Science.1088727  1
2003 Seshadri R, Paulsen IT, Eisen JA, Read TD, Nelson KE, Nelson WC, Ward NL, Tettelin H, Davidsen TM, Beanan MJ, Deboy RT, Daugherty SC, Brinkac LM, Madupu R, Dodson RJ, et al. Complete genome sequence of the Q-fever pathogen Coxiella burnetii. Proceedings of the National Academy of Sciences of the United States of America. 100: 5455-60. PMID 12704232 DOI: 10.1073/Pnas.0931379100  1
2002 Heidelberg JF, Paulsen IT, Nelson KE, Gaidos EJ, Nelson WC, Read TD, Eisen JA, Seshadri R, Ward N, Methe B, Clayton RA, Meyer T, Tsapin A, Scott J, Beanan M, et al. Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nature Biotechnology. 20: 1118-23. PMID 12368813 DOI: 10.1038/Nbt749  1
2000 Ward NL, Rainey FA, Hedlund BP, Staley JT, Ludwig W, Stackebrandt E. Comparative phylogenetic analyses of members of the order Planctomycetales and the division Verrucomicrobia: 23S rRNA gene sequence analysis supports the 16S rRNA gene sequence-derived phylogeny. International Journal of Systematic and Evolutionary Microbiology. 50: 1965-72. PMID 11155969 DOI: 10.1099/00207713-50-6-1965  1
1993 Rainey FA, Ward NL, Morgan HW, Toalster R, Stackebrandt E. Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their reclassification Journal of Bacteriology. 175: 4772-4779. PMID 7687600 DOI: 10.1128/Jb.175.15.4772-4779.1993  1
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