| Year |
Citation |
Score |
| 2016 |
Li T, Wernersson R, Hansen RB, Horn H, Mercer J, Slodkowicz G, Workman CT, Rigina O, Rapacki K, Stærfeldt HH, Brunak S, Jensen TS, Lage K. A scored human protein-protein interaction network to catalyze genomic interpretation. Nature Methods. PMID 27892958 DOI: 10.1038/Nmeth.4083 |
0.687 |
|
| 2014 |
Clément-Ziza M, Marsellach FX, Codlin S, Papadakis MA, Reinhardt S, RodrÃguez-López M, Martin S, Marguerat S, Schmidt A, Lee E, Workman CT, Bähler J, Beyer A. Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast. Molecular Systems Biology. 10: 764. PMID 25432776 DOI: 10.15252/Msb.20145123 |
0.408 |
|
| 2014 |
Jiang L, Edwards SM, Thomsen B, Workman CT, Guldbrandtsen B, Sørensen P. A random set scoring model for prioritization of disease candidate genes using protein complexes and data-mining of GeneRIF, OMIM and PubMed records. Bmc Bioinformatics. 15: 315. PMID 25253562 DOI: 10.1186/1471-2105-15-315 |
0.322 |
|
| 2014 |
Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Research. 42: 7681-93. PMID 24914054 DOI: 10.1093/Nar/Gku502 |
0.432 |
|
| 2013 |
Jensen MK, Lindemose S, de Masi F, Reimer JJ, Nielsen M, Perera V, Workman CT, Turck F, Grant MR, Mundy J, Petersen M, Skriver K. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. Febs Open Bio. 3: 321-7. PMID 23951554 DOI: 10.1016/J.Fob.2013.07.006 |
0.37 |
|
| 2009 |
Ucar D, Beyer A, Parthasarathy S, Workman CT. Predicting functionality of protein-DNA interactions by integrating diverse evidence. Bioinformatics (Oxford, England). 25: i137-44. PMID 19477979 DOI: 10.1093/Bioinformatics/Btp213 |
0.496 |
|
| 2008 |
Fazio A, Jewett MC, Daran-Lapujade P, Mustacchi R, Usaite R, Pronk JT, Workman CT, Nielsen J. Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: a three factor design. Bmc Genomics. 9: 341. PMID 18638364 DOI: 10.1186/1471-2164-9-341 |
0.339 |
|
| 2007 |
Bergholdt R, Størling ZM, Lage K, Karlberg EO, Olason PI, Aalund M, Nerup J, Brunak S, Workman CT, Pociot F. Integrative analysis for finding genes and networks involved in diabetes and other complex diseases. Genome Biology. 8: R253. PMID 18045462 DOI: 10.1186/Gb-2007-8-11-R253 |
0.307 |
|
| 2007 |
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, et al. Integration of biological networks and gene expression data using Cytoscape. Nature Protocols. 2: 2366-82. PMID 17947979 DOI: 10.1038/Nprot.2007.324 |
0.687 |
|
| 2007 |
Hollunder J, Friedel M, Beyer A, Workman CT, Wilhelm T. DASS: efficient discovery and p-value calculation of substructures in unordered data. Bioinformatics (Oxford, England). 23: 77-83. PMID 17032678 DOI: 10.1093/Bioinformatics/Btl511 |
0.452 |
|
| 2007 |
WARNER G, ADELEYE Y, IDEKER T, WORKMAN C, SCOTT D. Development of a systems approach for the analysis of toxicogenomic data Toxicology. 231: 109-110. DOI: 10.1016/J.Tox.2006.11.034 |
0.401 |
|
| 2006 |
Beyer A, Workman C, Hollunder J, Radke D, Möller U, Wilhelm T, Ideker T. Integrated assessment and prediction of transcription factor binding. Plos Computational Biology. 2: e70. PMID 16789814 DOI: 10.1371/Journal.Pcbi.0020070 |
0.617 |
|
| 2006 |
Workman CT, Mak HC, McCuine S, Tagne JB, Agarwal M, Ozier O, Begley TJ, Samson LD, Ideker T. A systems approach to mapping DNA damage response pathways. Science (New York, N.Y.). 312: 1054-9. PMID 16709784 DOI: 10.1126/Science.1122088 |
0.667 |
|
| 2005 |
Yeang CH, Mak HC, McCuine S, Workman C, Jaakkola T, Ideker T. Validation and refinement of gene-regulatory pathways on a network of physical interactions. Genome Biology. 6: R62. PMID 15998451 DOI: 10.1186/Gb-2005-6-7-R62 |
0.687 |
|
| 2005 |
Workman CT, Yin Y, Corcoran DL, Ideker T, Stormo GD, Benos PV. enoLOGOS: a versatile web tool for energy normalized sequence logos. Nucleic Acids Research. 33: W389-92. PMID 15980495 DOI: 10.1093/Nar/Gki439 |
0.411 |
|
| 2002 |
Jensen LJ, Gupta R, Blom N, Devos D, Tamames J, Kesmir C, Nielsen H, Staerfeldt HH, Rapacki K, Workman C, Andersen CA, Knudsen S, Krogh A, Valencia A, Brunak S. Prediction of human protein function from post-translational modifications and localization features. Journal of Molecular Biology. 319: 1257-65. PMID 12079362 DOI: 10.1016/S0022-2836(02)00379-0 |
0.303 |
|
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