Year |
Citation |
Score |
2020 |
Kang J, Ismail AM, Dehghan S, Rajaiya J, Allard MW, Lim HC, Dyer DW, Chodosh J, Seto D. Genomics‐based re‐examination of the taxonomy and phylogeny of
human
and
simian Mastadenoviruses
: an evolving whole genomes approach, revealing putative zoonosis, anthroponosis, and amphizoonosis Cladistics. 36: 358-373. DOI: 10.1111/Cla.12422 |
0.376 |
|
2019 |
Ashrafali MI, Zhou X, Dyer DW, Seto D, Rajaiya J, Chodosh J. Genomic foundations of evolution and ocular pathogenesis in human adenovirus species D. Febs Letters. PMID 31769017 DOI: 10.1002/1873-3468.13693 |
0.319 |
|
2019 |
Dehghan S, Seto J, Liu EB, Ismail AM, Madupu R, Heim A, Jones MS, Dyer DW, Chodosh J, Seto D. A zoonotic adenoviral human pathogen emerged through genomic recombination amongst human and nonhuman simian hosts. Journal of Virology. PMID 31243128 DOI: 10.1128/Jvi.00564-19 |
0.384 |
|
2019 |
Singh G, Ismail AM, Lee JY, Ramke M, Lee JS, Dyer DW, Seto D, Rajaiya J, Chodosh J. Divergent Evolution of E1A CR3 in Human Adenovirus Species D. Viruses. 11. PMID 30744049 DOI: 10.3390/V11020143 |
0.356 |
|
2018 |
Ismail AM, Lee JS, Lee JY, Singh G, Dyer DW, Seto D, Chodosh J, Rajaiya J. Corrigendum: Adenoviromics: Mining the Human Adenovirus Species D Genome. Frontiers in Microbiology. 9: 3005. PMID 30555456 DOI: 10.3389/Fmicb.2018.03005 |
0.31 |
|
2018 |
Ismail AM, Lee JS, Lee JY, Singh G, Dyer DW, Seto D, Chodosh J, Rajaiya J. Adenoviromics: Mining the Human Adenovirus Species D Genome. Frontiers in Microbiology. 9: 2178. PMID 30254627 DOI: 10.3389/Fmicb.2018.02178 |
0.361 |
|
2018 |
Lee JY, Lee JS, Materne EC, Rajala R, Ismail AM, Seto D, Dyer DW, Rajaiya J, Chodosh J. Bacterial RecA Protein Promotes Adenoviral Recombination during Infection. Msphere. 3. PMID 29925671 DOI: 10.1128/mSphere.00105-18 |
0.306 |
|
2018 |
Ismail AM, Cui T, Dommaraju K, Singh G, Dehghan S, Seto J, Shrivastava S, Fedorova NB, Gupta N, Stockwell TB, Madupu R, Heim A, Kajon AE, Romanowski EG, Kowalski RP, ... ... Dyer DW, et al. Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens. Emerging Microbes & Infections. 7: 10. PMID 29410402 DOI: 10.1038/S41426-017-0004-Y |
0.405 |
|
2017 |
Cole BK, Scott E, Ilikj M, Bard D, Akins DR, Dyer DW, Chavez-Bueno S. Route of infection alters virulence of neonatal septicemia Escherichia coli clinical isolates. Plos One. 12: e0189032. PMID 29236742 DOI: 10.1371/Journal.Pone.0189032 |
0.331 |
|
2017 |
Jackson LA, Day M, Allen J, Scott E, Dyer DW. Iron-regulated small RNA expression as Neisseria gonorrhoeae FA 1090 transitions into stationary phase growth. Bmc Genomics. 18: 317. PMID 28431495 DOI: 10.1186/S12864-017-3684-8 |
0.389 |
|
2017 |
Ramke M, Lee JY, Dyer DW, Seto D, Rajaiya J, Chodosh J. The 5'UTR in human adenoviruses: leader diversity in late gene expression. Scientific Reports. 7: 618. PMID 28377580 DOI: 10.1038/S41598-017-00747-Y |
0.343 |
|
2016 |
Ismail AM, Lee J, Dyer DW, Seto D, Rajaiya J, Chodosh J. Selection pressure in the human adenovirus fiber knob drives cell specificity in epidemic keratoconjunctivitis. Journal of Virology. PMID 27512073 DOI: 10.1128/Jvi.01010-16 |
0.348 |
|
2015 |
Singh G, Zhou X, Lee JY, Yousuf MA, Ramke M, Ismail AM, Lee JS, Robinson CM, Seto D, Dyer DW, Jones MS, Rajaiya J, Chodosh J. Recombination of the epsilon determinant and corneal tropism: Human adenovirus species D types 15, 29, 56, and 69. Virology. 485: 452-459. PMID 26343864 DOI: 10.1016/J.Virol.2015.08.018 |
0.328 |
|
2015 |
Day MW, Jackson LA, Akins DR, Dyer DW, Chavez-Bueno S. Whole-Genome Sequences of the Archetypal K1 Escherichia coli Neonatal Isolate RS218 and Contemporary Neonatal Bacteremia Clinical Isolates SCB11, SCB12, and SCB15. Genome Announcements. 3. PMID 25720688 DOI: 10.1128/Genomea.01598-14 |
0.328 |
|
2014 |
Toby IT, Widmer J, Dyer DW. Divergence of protein-coding capacity and regulation in the Bacillus cereus sensu lato group. Bmc Bioinformatics. 15: S8. PMID 25350501 DOI: 10.1186/1471-2105-15-S11-S8 |
0.327 |
|
2014 |
Day M, Ibrahim M, Dyer D, Bulla L. Genome Sequence of Bacillus thuringiensis subsp. kurstaki Strain HD-1. Genome Announcements. 2. PMID 25035322 DOI: 10.1128/Genomea.00613-14 |
0.344 |
|
2014 |
Chavez-Bueno S, Day MW, Toby IT, Akins DR, Dyer DW. Genome Sequence of SCB34, a Sequence Type 131 Multidrug-Resistant Escherichia coli Isolate Causing Neonatal Early-Onset Sepsis. Genome Announcements. 2. PMID 24926049 DOI: 10.1128/Genomea.00514-14 |
0.326 |
|
2013 |
Dehghan S, Seto J, Jones MS, Dyer DW, Chodosh J, Seto D. Simian adenovirus type 35 has a recombinant genome comprising human and simian adenovirus sequences, which predicts its potential emergence as a human respiratory pathogen. Virology. 447: 265-73. PMID 24210123 DOI: 10.1016/J.Virol.2013.09.009 |
0.378 |
|
2013 |
Seto D, Jones MS, Dyer DW, Chodosh J. Characterizing, typing, and naming human adenovirus type 55 in the era of whole genome data. Journal of Clinical Virology : the Official Publication of the Pan American Society For Clinical Virology. 58: 741-2. PMID 24161575 DOI: 10.1016/J.Jcv.2013.09.025 |
0.311 |
|
2013 |
Jackson LA, Pan JC, Day MW, Dyer DW. Control of RNA stability by NrrF, an iron-regulated small RNA in Neisseria gonorrhoeae. Journal of Bacteriology. 195: 5166-73. PMID 24039262 DOI: 10.1128/Jb.00839-13 |
0.4 |
|
2013 |
Singh G, Robinson CM, Dehghan S, Jones MS, Dyer DW, Seto D, Chodosh J. Homologous recombination in E3 genes of human adenovirus species D. Journal of Virology. 87: 12481-8. PMID 24027303 DOI: 10.1128/Jvi.01927-13 |
0.376 |
|
2013 |
Dehghan S, Seto J, Liu EB, Walsh MP, Dyer DW, Chodosh J, Seto D. Computational analysis of four human adenovirus type 4 genomes reveals molecular evolution through two interspecies recombination events. Virology. 443: 197-207. PMID 23763770 DOI: 10.1016/J.Virol.2013.05.014 |
0.391 |
|
2013 |
Robinson CM, Singh G, Lee JY, Dehghan S, Rajaiya J, Liu EB, Yousuf MA, Betensky RA, Jones MS, Dyer DW, Seto D, Chodosh J. Molecular evolution of human adenoviruses. Scientific Reports. 3: 1812. PMID 23657240 DOI: 10.1038/Srep01812 |
0.362 |
|
2013 |
Robinson CM, Zhou X, Rajaiya J, Yousuf MA, Singh G, DeSerres JJ, Walsh MP, Wong S, Seto D, Dyer DW, Chodosh J, Jones MS. Predicting the next eye pathogen: analysis of a novel adenovirus. Mbio. 4: e00595-12. PMID 23572555 DOI: 10.1128/Mbio.00595-12 |
0.34 |
|
2012 |
Scott E, Dyer DW. Divergence of the SigB regulon and pathogenesis of the Bacillus cereus sensu lato group. Bmc Genomics. 13: 564. PMID 23088190 DOI: 10.1186/1471-2164-13-564 |
0.309 |
|
2012 |
Tekedar HC, Karsi A, Gillaspy AF, Dyer DW, Benton NR, Zaitshik J, Vamenta S, Banes MM, Gülsoy N, Aboko-Cole M, Waldbieser GC, Lawrence ML. Genome sequence of the fish pathogen Flavobacterium columnare ATCC 49512. Journal of Bacteriology. 194: 2763-4. PMID 22535941 DOI: 10.1128/Jb.00281-12 |
0.344 |
|
2012 |
Zhou X, Robinson CM, Rajaiya J, Dehghan S, Seto D, Jones MS, Dyer DW, Chodosh J. Analysis of human adenovirus type 19 associated with epidemic keratoconjunctivitis and its reclassification as adenovirus type 64. Investigative Ophthalmology & Visual Science. 53: 2804-11. PMID 22467570 DOI: 10.1167/Iovs.12-9656 |
0.307 |
|
2012 |
Liu EB, Wadford DA, Seto J, Vu M, Hudson NR, Thrasher L, Torres S, Dyer DW, Chodosh J, Seto D, Jones MS. Computational and serologic analysis of novel and known viruses in species human adenovirus D in which serology and genomics do not correlate. Plos One. 7: e33212. PMID 22427992 DOI: 10.1371/Journal.Pone.0033212 |
0.336 |
|
2012 |
Singh G, Robinson CM, Dehghan S, Schmidt T, Seto D, Jones MS, Dyer DW, Chodosh J. Overreliance on the hexon gene, leading to misclassification of human adenoviruses. Journal of Virology. 86: 4693-5. PMID 22301156 DOI: 10.1128/Jvi.06969-11 |
0.38 |
|
2012 |
Williams ML, Gillaspy AF, Dyer DW, Thune RL, Waldbieser GC, Schuster SC, Gipson J, Zaitshik J, Landry C, Banes MM, Lawrence ML. Genome sequence of Edwardsiella ictaluri 93-146, a strain associated with a natural channel catfish outbreak of enteric septicemia of catfish. Journal of Bacteriology. 194: 740-1. PMID 22247535 DOI: 10.1128/Jb.06522-11 |
0.339 |
|
2012 |
Mercante AD, Jackson L, Johnson PJ, Stringer VA, Dyer DW, Shafer WM. MpeR regulates the mtr efflux locus in Neisseria gonorrhoeae and modulates antimicrobial resistance by an iron-responsive mechanism. Antimicrobial Agents and Chemotherapy. 56: 1491-501. PMID 22214775 DOI: 10.1128/Aac.06112-11 |
0.415 |
|
2012 |
Dehghan S, Liu EB, Seto J, Torres SF, Hudson NR, Kajon AE, Metzgar D, Dyer DW, Chodosh J, Jones MS, Seto D. Five genome sequences of subspecies B1 human adenoviruses associated with acute respiratory disease. Journal of Virology. 86: 635-6. PMID 22158846 DOI: 10.1128/Jvi.06593-11 |
0.373 |
|
2011 |
Mullins MA, Register KB, Bayles DO, Dyer DW, Kuehn JS, Phillips GJ. Genome sequence of Haemophilus parasuis strain 29755. Standards in Genomic Sciences. 5: 61-8. PMID 22180811 DOI: 10.4056/Sigs.2245029 |
0.35 |
|
2011 |
Siddaramappa S, Challacombe JF, Duncan AJ, Gillaspy AF, Carson M, Gipson J, Orvis J, Zaitshik J, Barnes G, Bruce D, Chertkov O, Detter JC, Han CS, Tapia R, Thompson LS, ... Dyer DW, et al. Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses. Bmc Genomics. 12: 570. PMID 22111657 DOI: 10.1186/1471-2164-12-570 |
0.394 |
|
2011 |
Dehghan S, Seto J, Hudson NR, Robinson CM, Jones MS, Dyer DW, Chodosh J, Seto D. Complete genome sequence of human adenovirus prototype 17. Journal of Virology. 85: 11540-1. PMID 21980031 DOI: 10.1128/Jvi.06051-11 |
0.37 |
|
2011 |
Liu EB, Ferreyra L, Fischer SL, Pavan JV, Nates SV, Hudson NR, Tirado D, Dyer DW, Chodosh J, Seto D, Jones MS. Genetic analysis of a novel human adenovirus with a serologically unique hexon and a recombinant fiber gene. Plos One. 6: e24491. PMID 21915339 DOI: 10.1371/Journal.Pone.0024491 |
0.375 |
|
2011 |
Schmidt TR, Scott EJ, Dyer DW. Whole-genome phylogenies of the family Bacillaceae and expansion of the sigma factor gene family in the Bacillus cereus species-group. Bmc Genomics. 12: 430. PMID 21864360 DOI: 10.1186/1471-2164-12-430 |
0.35 |
|
2011 |
Walsh MP, Seto J, Liu EB, Dehghan S, Hudson NR, Lukashev AN, Ivanova O, Chodosh J, Dyer DW, Jones MS, Seto D. Computational analysis of two species C human adenoviruses provides evidence of a novel virus. Journal of Clinical Microbiology. 49: 3482-90. PMID 21849694 DOI: 10.1128/Jcm.00156-11 |
0.308 |
|
2011 |
Robinson CM, Rajaiya J, Zhou X, Singh G, Dyer DW, Chodosh J. The E3 CR1-gamma gene in human adenoviruses associated with epidemic keratoconjunctivitis. Virus Research. 160: 120-7. PMID 21683743 DOI: 10.1016/J.Virusres.2011.05.022 |
0.348 |
|
2011 |
Robinson CM, Seto D, Jones MS, Dyer DW, Chodosh J. Molecular evolution of human species D adenoviruses. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 1208-17. PMID 21570490 DOI: 10.1016/J.Meegid.2011.04.031 |
0.321 |
|
2011 |
Kolb AW, Schmidt TR, Dyer DW, Brandt CR. Sequence variation in the herpes simplex virus U(S)1 ocular virulence determinant. Investigative Ophthalmology & Visual Science. 52: 4630-8. PMID 21519032 DOI: 10.1167/Iovs.10-7032 |
0.358 |
|
2011 |
Robinson CM, Singh G, Henquell C, Walsh MP, Peigue-Lafeuille H, Seto D, Jones MS, Dyer DW, Chodosh J. Computational analysis and identification of an emergent human adenovirus pathogen implicated in a respiratory fatality. Virology. 409: 141-7. PMID 21056888 DOI: 10.1016/J.Virol.2010.10.020 |
0.325 |
|
2010 |
Jackson LA, Ducey TF, Day MW, Zaitshik JB, Orvis J, Dyer DW. Transcriptional and functional analysis of the Neisseria gonorrhoeae Fur regulon. Journal of Bacteriology. 192: 77-85. PMID 19854902 DOI: 10.1128/Jb.00741-09 |
0.699 |
|
2009 |
Mullins MA, Register KB, Bayles DO, Loving CL, Nicholson TL, Brockmeier SL, Dyer DW, Phillips GJ. Characterization and comparative analysis of the genes encoding Haemophilus parasuis outer membrane proteins P2 and P5. Journal of Bacteriology. 191: 5988-6002. PMID 19633080 DOI: 10.1128/Jb.00469-09 |
0.323 |
|
2009 |
Robinson CM, Rajaiya J, Walsh MP, Seto D, Dyer DW, Jones MS, Chodosh J. Computational analysis of human adenovirus type 22 provides evidence for recombination among species D human adenoviruses in the penton base gene. Journal of Virology. 83: 8980-5. PMID 19553309 DOI: 10.1128/Jvi.00786-09 |
0.378 |
|
2009 |
Ducey TF, Jackson L, Orvis J, Dyer DW. Transcript analysis of nrrF, a Fur repressed sRNA of Neisseria gonorrhoeae. Microbial Pathogenesis. 46: 166-70. PMID 19162160 DOI: 10.1016/J.Micpath.2008.12.003 |
0.672 |
|
2009 |
Robinson CM, Shariati F, Zaitshik J, Gillaspy AF, Dyer DW, Chodosh J. Human adenovirus type 19: genomic and bioinformatics analysis of a keratoconjunctivitis isolate. Virus Research. 139: 122-6. PMID 19000724 DOI: 10.1016/J.Virusres.2008.10.001 |
0.417 |
|
2009 |
Folster JP, Johnson PJ, Jackson L, Dhulipali V, Dyer DW, Shafer WM. MtrR modulates rpoH expression and levels of antimicrobial resistance in Neisseria gonorrhoeae. Journal of Bacteriology. 191: 287-97. PMID 18978065 DOI: 10.1128/Jb.01165-08 |
0.37 |
|
2009 |
Barua S, McKevitt M, DeGiusti K, Hamm EE, Larabee J, Shakir S, Bryant K, Koehler TM, Blanke SR, Dyer D, Gillaspy A, Ballard JD. The mechanism of Bacillus anthracis intracellular germination requires multiple and highly diverse genetic loci. Infection and Immunity. 77: 23-31. PMID 18936179 DOI: 10.1128/Iai.00801-08 |
0.343 |
|
2008 |
Robinson CM, Shariati F, Gillaspy AF, Dyer DW, Chodosh J. Genomic and bioinformatics analysis of human adenovirus type 37: new insights into corneal tropism. Bmc Genomics. 9: 213. PMID 18471294 DOI: 10.1186/1471-2164-9-213 |
0.344 |
|
2005 |
Ducey TF, Carson MB, Orvis J, Stintzi AP, Dyer DW. Identification of the iron-responsive genes of Neisseria gonorrhoeae by microarray analysis in defined medium. Journal of Bacteriology. 187: 4865-74. PMID 15995201 DOI: 10.1128/Jb.187.14.4865-4874.2005 |
0.694 |
|
2005 |
Harrison A, Dyer DW, Gillaspy A, Ray WC, Mungur R, Carson MB, Zhong H, Gipson J, Gipson M, Johnson LS, Lewis L, Bakaletz LO, Munson RS. Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20. Journal of Bacteriology. 187: 4627-36. PMID 15968074 DOI: 10.1128/Jb.187.13.4627-4636.2005 |
0.349 |
|
2004 |
Kupfer DM, Drabenstot SD, Buchanan KL, Lai H, Zhu H, Dyer DW, Roe BA, Murphy JW. Introns and splicing elements of five diverse fungi. Eukaryotic Cell. 3: 1088-100. PMID 15470237 DOI: 10.1128/Ec.3.5.1088-1100.2004 |
0.34 |
|
2004 |
Munson RS, Harrison A, Gillaspy A, Ray WC, Carson M, Armbruster D, Gipson J, Gipson M, Johnson L, Lewis L, Dyer DW, Bakaletz LO. Partial analysis of the genomes of two nontypeable Haemophilus influenzae otitis media isolates. Infection and Immunity. 72: 3002-10. PMID 15102813 DOI: 10.1128/Iai.72.5.3002-3010.2004 |
0.397 |
|
2004 |
Rohde KH, Dyer DW. Analysis of haptoglobin and hemoglobin-haptoglobin interactions with the Neisseria meningitidis TonB-dependent receptor HpuAB by flow cytometry. Infection and Immunity. 72: 2494-506. PMID 15102756 DOI: 10.1128/Iai.72.5.2494-2506.2004 |
0.659 |
|
2003 |
Drabenstot SD, Kupfer DM, White JD, Dyer DW, Roe BA, Buchanan KL, Murphy JW. FELINES: a utility for extracting and examining EST-defined introns and exons. Nucleic Acids Research. 31: e141. PMID 14602934 DOI: 10.1093/Nar/Gng141 |
0.326 |
|
2003 |
Rohde KH, Dyer DW. Mechanisms of iron acquisition by the human pathogens Neisseria meningitidis and Neisseria gonorrhoeae. Frontiers in Bioscience : a Journal and Virtual Library. 8: d1186-218. PMID 12957813 DOI: 10.2741/1133 |
0.673 |
|
2002 |
Rohde KH, Gillaspy AF, Hatfield MD, Lewis LA, Dyer DW. Interactions of haemoglobin with the Neisseria meningitidis receptor HpuAB: the role of TonB and an intact proton motive force. Molecular Microbiology. 43: 335-54. PMID 11985713 DOI: 10.1046/J.1365-2958.2002.02745.X |
0.634 |
|
2001 |
Register KB, Ducey TF, Brockmeier SL, Dyer DW. Reduced virulence of a Bordetella bronchiseptica siderophore mutant in neonatal swine. Infection and Immunity. 69: 2137-43. PMID 11254568 DOI: 10.1128/Iai.69.4.2137-2143.2001 |
0.653 |
|
1999 |
Lewis LA, Gipson M, Hartman K, Ownbey T, Vaughn J, Dyer DW. Phase variation of HpuAB and HmbR, two distinct haemoglobin receptors of Neisseria meningitidis DNM2. Molecular Microbiology. 32: 977-89. PMID 10361300 DOI: 10.1046/J.1365-2958.1999.01409.X |
0.324 |
|
1998 |
Lewis LA, Sung MH, Gipson M, Hartman K, Dyer DW. Transport of intact porphyrin by HpuAB, the hemoglobin-haptoglobin utilization system of Neisseria meningitidis. Journal of Bacteriology. 180: 6043-7. PMID 9811666 DOI: 10.1128/Jb.180.22.6043-6047.1998 |
0.304 |
|
1998 |
Lewis LA, Rohde K, Gipson M, Behrens B, Gray E, Toth SI, Roe BA, Dyer DW. Identification and molecular analysis of lbpBA, which encodes the two- component meningococcal lactoferrin receptor Infection and Immunity. 66: 3017-3023. PMID 9596785 DOI: 10.1128/Iai.66.6.3017-3023.1998 |
0.367 |
|
1997 |
Giardina PC, Foster LA, Toth SI, Bruce A R, Dyer DW. Analysis of the alcABC operon encoding alcaligin biosynthesis enzymes in Bordetella bronchiseptica Gene. 194: 19-24. PMID 9266668 DOI: 10.1016/S0378-1119(97)00094-2 |
0.39 |
|
1997 |
Lewis LA, Gray E, Wang YP, Roe BA, Dyer DW. Molecular characterization of hpuAB, the haemoglobin-haptoglobin-utilization operon of Neisseria meningitidis Molecular Microbiology. 23: 737-749. PMID 9157245 DOI: 10.1046/J.1365-2958.1997.2501619.X |
0.425 |
|
1996 |
Winston JL, Toth SI, Roe BA, Dyer DW. Cloning and characterization of the Actinobacillus actinomycetemcomitans gene encoding a heat-shock protein 90 homologue Gene. 179: 199-204. PMID 8972900 DOI: 10.1016/S0378-1119(96)00317-4 |
0.386 |
|
1995 |
Giardina PC, Foster LA, Toth SI, Roe BA, Dyer DW. Identification of alcA, a Bordetella bronchiseptica gene necessary for alcaligin production Gene. 167: 133-136. PMID 8566764 DOI: 10.1016/0378-1119(95)00659-1 |
0.41 |
|
1995 |
Giardina PC, Foster LA, Musser JM, Akerley BJ, Miller JF, Dyer DW. bvg Repression of alcaligin synthesis in Bordetella bronchiseptica is associated with phylogenetic lineage Journal of Bacteriology. 177: 6058-6063. PMID 7592367 DOI: 10.1128/Jb.177.21.6058-6063.1995 |
0.392 |
|
1994 |
Campagnari AA, Shanks KL, Dyer DW. Growth of Moraxella catarrhalis with human transferrin and lactoferrin: Expression of iron-repressible proteins without siderophore production Infection and Immunity. 62: 4909-4914. PMID 7927771 DOI: 10.1128/Iai.62.11.4909-4914.1994 |
0.389 |
|
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