Hilary A. Coller - Publications

Molecular Biology Princeton University, Princeton, NJ 
Molecular Biology, Cell Biology

57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Mitra M, Johnson EL, Swamy VS, Nersesian LE, Corney DC, Robinson DG, Taylor DG, Ambrus AM, Jelinek D, Wang W, Batista SL, Coller HA. Alternative polyadenylation factors link cell cycle to migration. Genome Biology. 19: 176. PMID 30360761 DOI: 10.1186/s13059-018-1551-9  0.32
2018 Lee HN, Mitra M, Bosompra O, Corney DC, Johnson EL, Rashed N, Ho LD, Coller HA. RECK isoforms have opposing effects on cell migration. Molecular Biology of the Cell. mbcE17120708. PMID 29874120 DOI: 10.1091/mbc.E17-12-0708  0.32
2017 Johnson EL, Robinson DG, Coller HA. Widespread changes in mRNA stability contribute to quiescence-specific gene expression patterns in a fibroblast model of quiescence. Bmc Genomics. 18: 123. PMID 28143407 DOI: 10.1186/s12864-017-3521-0  0.32
2016 Rabinowitz JD, Coller HA. Partners in the Warburg effect. Elife. 5. PMID 27073176 DOI: 10.7554/eLife.15938  1
2015 Mitra M, Johnson EL, Coller HA. Alternative polyadenylation can regulate post-translational membrane localization. Trends in Cell & Molecular Biology. 10: 37-47. PMID 26937127  0.32
2014 Coller HA. The Runt-related transcription factor 1 in prostate cancer-associated fibroblasts. Proceedings of the National Academy of Sciences of the United States of America. 111: 16238-9. PMID 25385588 DOI: 10.1073/pnas.1418976111  1
2014 Corney DC, Coller HA. On form and function: does chromatin packing regulate the cell cycle? Physiological Genomics. 46: 191-4. PMID 24474443 DOI: 10.1152/physiolgenomics.00002.2014  1
2014 Coller HA. Is cancer a metabolic disease? The American Journal of Pathology. 184: 4-17. PMID 24139946 DOI: 10.1016/j.ajpath.2013.07.035  1
2013 Evertts AG, Manning AL, Wang X, Dyson NJ, Garcia BA, Coller HA. H4K20 methylation regulates quiescence and chromatin compaction. Molecular Biology of the Cell. 24: 3025-37. PMID 23924899 DOI: 10.1091/mbc.E12-07-0529  1
2013 Jiang P, Singh M, Coller HA. Computational assessment of the cooperativity between RNA binding proteins and MicroRNAs in Transcript Decay. Plos Computational Biology. 9: e1003075. PMID 23737738 DOI: 10.1371/journal.pcbi.1003075  1
2013 Coller HA. Introducing the systems biology of cell state regulation section of Physiological Genomics. Physiological Genomics. 45: 407-8. PMID 23632415 DOI: 10.1152/physiolgenomics.00052.2013  1
2013 Evertts AG, Zee BM, Dimaggio PA, Gonzales-Cope M, Coller HA, Garcia BA. Quantitative dynamics of the link between cellular metabolism and histone acetylation. The Journal of Biological Chemistry. 288: 12142-51. PMID 23482559 DOI: 10.1074/jbc.M112.428318  1
2012 Evertts AG, Coller HA. Back to the origin: reconsidering replication, transcription, epigenetics, and cell cycle control. Genes & Cancer. 3: 678-96. PMID 23634256 DOI: 10.1177/1947601912474891  1
2012 Suh EJ, Remillard MY, Legesse-Miller A, Johnson EL, Lemons JM, Chapman TR, Forman JJ, Kojima M, Silberman ES, Coller HA. A microRNA network regulates proliferative timing and extracellular matrix synthesis during cellular quiescence in fibroblasts. Genome Biology. 13: R121. PMID 23259597 DOI: 10.1186/gb-2012-13-12-r121  1
2012 Legesse-Miller A, Raitman I, Haley EM, Liao A, Sun LL, Wang DJ, Krishnan N, Lemons JM, Suh EJ, Johnson EL, Lund BA, Coller HA. Quiescent fibroblasts are protected from proteasome inhibition-mediated toxicity. Molecular Biology of the Cell. 23: 3566-81. PMID 22875985 DOI: 10.1091/mbc.E12-03-0192  1
2012 Valcourt JR, Lemons JM, Haley EM, Kojima M, Demuren OO, Coller HA. Staying alive: metabolic adaptations to quiescence. Cell Cycle (Georgetown, Tex.). 11: 1680-96. PMID 22510571 DOI: 10.4161/cc.19879  1
2012 Wang DJ, Legesse-Miller A, Johnson EL, Coller HA. Regulation of the let-7a-3 promoter by NF-κB. Plos One. 7: e31240. PMID 22348059 DOI: 10.1371/journal.pone.0031240  1
2012 Ventura-Clapier R, Coller HA. A step toward systems metabolomics. Physiological Genomics. 44: 383-5. PMID 22337904 DOI: 10.1152/physiolgenomics.00023.2012  1
2012 Waldron L, Coller HA, Huttenhower C. Integrative approaches for microarray data analysis. Methods in Molecular Biology (Clifton, N.J.). 802: 157-82. PMID 22130880 DOI: 10.1007/978-1-61779-400-1_11  1
2012 Johnson EL, Suh EJ, Chapman TR, Coller HA. Identifying functional miRNA targets using overexpression and knockdown methods Regulatory Rnas: Basics, Methods and Applications. 2147483647: 295-317. DOI: 10.1007/978-3-642-22517-8_12  1
2011 Coller HA. Cell biology. The essence of quiescence. Science (New York, N.Y.). 334: 1074-5. PMID 22116874 DOI: 10.1126/science.1216242  1
2011 Guo JY, Chen HY, Mathew R, Fan J, Strohecker AM, Karsli-Uzunbas G, Kamphorst JJ, Chen G, Lemons JM, Karantza V, Coller HA, Dipaola RS, Gelinas C, Rabinowitz JD, White E. Activated Ras requires autophagy to maintain oxidative metabolism and tumorigenesis. Genes & Development. 25: 460-70. PMID 21317241 DOI: 10.1101/gad.2016311  1
2010 Wellen KE, Lu C, Mancuso A, Lemons JM, Ryczko M, Dennis JW, Rabinowitz JD, Coller HA, Thompson CB. The hexosamine biosynthetic pathway couples growth factor-induced glutamine uptake to glucose metabolism. Genes & Development. 24: 2784-99. PMID 21106670 DOI: 10.1101/gad.1985910  1
2010 Lemons JM, Feng XJ, Bennett BD, Legesse-Miller A, Johnson EL, Raitman I, Pollina EA, Rabitz HA, Rabinowitz JD, Coller HA. Quiescent fibroblasts exhibit high metabolic activity. Plos Biology. 8: e1000514. PMID 21049082 DOI: 10.1371/journal.pbio.1000514  1
2010 Forman JJ, Coller HA. The code within the code: microRNAs target coding regions. Cell Cycle (Georgetown, Tex.). 9: 1533-41. PMID 20372064  1
2010 Ward PS, Patel J, Wise DR, Abdel-Wahab O, Bennett BD, Coller HA, Cross JR, Fantin VR, Hedvat CV, Perl AE, Rabinowitz JD, Carroll M, Su SM, Sharp KA, Levine RL, et al. The common feature of leukemia-associated IDH1 and IDH2 mutations is a neomorphic enzyme activity converting alpha-ketoglutarate to 2-hydroxyglutarate. Cancer Cell. 17: 225-34. PMID 20171147 DOI: 10.1016/j.ccr.2010.01.020  1
2010 Sang L, Roberts JM, Coller HA. Hijacking HES1: how tumors co-opt the anti-differentiation strategies of quiescent cells. Trends in Molecular Medicine. 16: 17-26. PMID 20022559 DOI: 10.1016/j.molmed.2009.11.001  1
2009 Huttenhower C, Mutungu KT, Indik N, Yang W, Schroeder M, Forman JJ, Troyanskaya OG, Coller HA. Detailing regulatory networks through large scale data integration. Bioinformatics (Oxford, England). 25: 3267-74. PMID 19825796 DOI: 10.1093/bioinformatics/btp588  1
2009 Sang L, Coller HA. Fear of commitment: Hes1 protects quiescent fibroblasts from irreversible cellular fates. Cell Cycle (Georgetown, Tex.). 8: 2161-7. PMID 19587546  1
2009 Huttenhower C, Haley EM, Hibbs MA, Dumeaux V, Barrett DR, Coller HA, Troyanskaya OG. Exploring the human genome with functional maps. Genome Research. 19: 1093-106. PMID 19246570 DOI: 10.1101/gr.082214.108  1
2009 Legesse-Miller A, Elemento O, Pfau SJ, Forman JJ, Tavazoie S, Coller HA. let-7 Overexpression leads to an increased fraction of cells in G2/M, direct down-regulation of Cdc34, and stabilization of Wee1 kinase in primary fibroblasts. The Journal of Biological Chemistry. 284: 6605-9. PMID 19126550 DOI: 10.1074/jbc.C900002200  1
2008 Coller HA, Kruglyak L. Genetics. It's the sequence, stupid! Science (New York, N.Y.). 322: 380-1. PMID 18927376 DOI: 10.1126/science.1165664  1
2008 Sudo H, Li-Sucholeiki XC, Marcelino LA, Gruhl AN, Herrero-Jimenez P, Zarbl H, Willey JC, Furth EE, Morgenthaler S, Coller HA, Ekstrom PO, Kurzweil R, Gostjeva EV, Thilly WG. Fetal-juvenile origins of point mutations in the adult human tracheal-bronchial epithelium: absence of detectable effects of age, gender or smoking status. Mutation Research. 646: 25-40. PMID 18824180 DOI: 10.1016/j.mrfmmm.2008.08.016  1
2008 Forman JJ, Legesse-Miller A, Coller HA. A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence. Proceedings of the National Academy of Sciences of the United States of America. 105: 14879-84. PMID 18812516 DOI: 10.1073/pnas.0803230105  1
2008 Sang L, Coller HA, Roberts JM. Control of the reversibility of cellular quiescence by the transcriptional repressor HES1. Science (New York, N.Y.). 321: 1095-100. PMID 18719287 DOI: 10.1126/science.1155998  1
2008 Pollina EA, Legesse-Miller A, Haley EM, Goodpaster T, Randolph-Habecker J, Coller HA. Regulating the angiogenic balance in tissues. Cell Cycle (Georgetown, Tex.). 7: 2056-70. PMID 18642446  1
2008 Goodpaster T, Legesse-Miller A, Hameed MR, Aisner SC, Randolph-Habecker J, Coller HA. An immunohistochemical method for identifying fibroblasts in formalin-fixed, paraffin-embedded tissue. The Journal of Histochemistry and Cytochemistry : Official Journal of the Histochemistry Society. 56: 347-58. PMID 18071065 DOI: 10.1369/jhc.7A7287.2007  1
2007 Coller HA, Forman JJ, Legesse-Miller A. "Myc'ed messages": myc induces transcription of E2F1 while inhibiting its translation via a microRNA polycistron. Plos Genetics. 3: e146. PMID 17784791 DOI: 10.1371/journal.pgen.0030146  1
2007 Coller HA. What's taking so long? S-phase entry from quiescence versus proliferation. Nature Reviews. Molecular Cell Biology. 8: 667-70. PMID 17637736 DOI: 10.1038/nrm2223  1
2007 Huttenhower C, Flamholz AI, Landis JN, Sahi S, Myers CL, Olszewski KL, Hibbs MA, Siemers NO, Troyanskaya OG, Coller HA. Nearest Neighbor Networks: clustering expression data based on gene neighborhoods. Bmc Bioinformatics. 8: 250. PMID 17626636 DOI: 10.1186/1471-2105-8-250  1
2007 Miller DL, Myers CL, Rickards B, Coller HA, Flint SJ. Adenovirus type 5 exerts genome-wide control over cellular programs governing proliferation, quiescence, and survival. Genome Biology. 8: R58. PMID 17430596 DOI: 10.1186/gb-2007-8-4-r58  1
2006 Munger J, Bajad SU, Coller HA, Shenk T, Rabinowitz JD. Dynamics of the cellular metabolome during human cytomegalovirus infection. Plos Pathogens. 2: e132. PMID 17173481 DOI: 10.1371/journal.ppat.0020132  1
2006 Coller HA, Sang L, Roberts JM. A new description of cellular quiescence. Plos Biology. 4: e83. PMID 16509772 DOI: 10.1371/journal.pbio.0040083  1
2006 Zheng W, Khrapko K, Coller HA, Thilly WG, Copeland WC. Origins of human mitochondrial point mutations as DNA polymerase gamma-mediated errors. Mutation Research. 599: 11-20. PMID 16490220 DOI: 10.1016/j.mrfmmm.2005.12.012  1
2005 Coller HA, Khrapko K, Herrero-Jimenez P, Vatland JA, Li-Sucholeiki XC, Thilly WG. Clustering of mutant mitochondrial DNA copies suggests stem cells are common in human bronchial epithelium. Mutation Research. 578: 256-71. PMID 16009384 DOI: 10.1016/j.mrfmmm.2005.05.014  1
2003 Smith LL, Coller HA, Roberts JM. Telomerase modulates expression of growth-controlling genes and enhances cell proliferation. Nature Cell Biology. 5: 474-9. PMID 12717449 DOI: 10.1038/ncb985  1
2002 Coller HA, Bodyak ND, Khrapko K. Frequent intracellular clonal expansions of somatic mtDNA mutations: significance and mechanisms. Annals of the New York Academy of Sciences. 959: 434-47. PMID 11976216  1
2001 Staunton JE, Slonim DK, Coller HA, Tamayo P, Angelo MJ, Park J, Scherf U, Lee JK, Reinhold WO, Weinstein JN, Mesirov JP, Lander ES, Golub TR. Chemosensitivity prediction by transcriptional profiling. Proceedings of the National Academy of Sciences of the United States of America. 98: 10787-92. PMID 11553813 DOI: 10.1073/pnas.191368598  1
2001 Coller HA, Khrapko K, Bodyak ND, Nekhaeva E, Herrero-Jimenez P, Thilly WG. High frequency of homoplasmic mitochondrial DNA mutations in human tumors can be explained without selection Nature Genetics. 28: 147-150. PMID 11381261 DOI: 10.1038/88859  1
2001 Khrapko K, Coller HA, Li-Sucholeiki XC, André PC, Thilly WG. High resolution analysis of point mutations by constant denaturant capillary electrophoresis (CDCE). Methods in Molecular Biology (Clifton, N.J.). 163: 57-72. PMID 11242964 DOI: 10.1385/1-59259-116-7:57  1
2000 Coller HA, Grandori C, Tamayo P, Colbert T, Lander ES, Eisenman RN, Golub TR. Expression analysis with oligonucleotide microarrays reveals that MYC regulates genes involved in growth, cell cycle, signaling, and adhesion. Proceedings of the National Academy of Sciences of the United States of America. 97: 3260-5. PMID 10737792 DOI: 10.1073/pnas.97.7.3260  1
1999 Khrapko K, Bodyak N, Thilly WG, Van Orsouw NJ, Zhang X, Coller HA, Peris TT, Upton M, Vijg J, Wei JY. Cell-by-cell scanning of whole mitochondrial genomes in aged human heart reveals a significant fraction of myocytes with clonally expanded deletions Nucleic Acids Research. 27: 2434-2441. PMID 10325435  1
1998 Khrapko K, Coller HA, Hanekamp JS, Thilly WG. Identification of point mutations in mixtures by capillary electrophoresis hybridization Nucleic Acids Research. 26: 5738-5740. PMID 9838007  1
1998 Marcelino LA, André PC, Khrapko K, Coller HA, Griffith J, Thilly WG. Chemically induced mutations in mitochondrial dna of human cells: Mutational spectrum of N-methyl-N'-nitro-N-nitrosoguanidine Cancer Research. 58: 2857-2862. PMID 9661902  1
1998 Coller HA, Khrapko K, Torres A, Frampton MW, Utell MJ, Thilly WG. Mutational spectra of a 100-base pair mitochondrial DNA target sequence in bronchial epithelial cells: A comparison of smoking and nonsmoking twins Cancer Research. 58: 1268-1277. PMID 9515815  1
1997 Khrapko K, Coller HA, André PC, Li XC, Hanekamp JS, Thilly WG. Mitochondrial mutational spectra in human cells and tissues Proceedings of the National Academy of Sciences of the United States of America. 94: 13798-13803. PMID 9391107 DOI: 10.1073/pnas.94.25.13798  1
1994 Coller HA, Thilly WG. Development and applications of mutational spectra technology Environmental Science and Technology. 28.  1
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