Vivian G. Cheung - Publications

Cell and Molecular Biology University of Pennsylvania, Philadelphia, PA, United States 
Genetics, Cell Biology, Pathology, Oncology

58 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Wang IX, Ramrattan G, Cheung VG. Genetic variation in insulin-induced kinase signaling Molecular Systems Biology. 11. DOI: 10.15252/msb.20156250  0.76
2014 Oliver TR, Middlebrooks CD, Tinker SW, Allen EG, Bean LJ, Begum F, Feingold E, Chowdhury R, Cheung V, Sherman SL. An examination of the relationship between hotspots and recombination associated with chromosome 21 nondisjunction. Plos One. 9: e99560. PMID 24926858 DOI: 10.1371/Journal.Pone.0099560  0.76
2014 Wang IX, Core LJ, Kwak H, Brady L, Bruzel A, McDaniel L, Richards AL, Wu M, Grunseich C, Lis JT, Cheung VG. RNA-DNA differences are generated in human cells within seconds after RNA exits polymerase II. Cell Reports. 6: 906-15. PMID 24561252 DOI: 10.1016/J.Celrep.2014.01.037  0.76
2014 Gregory BL, Cheung VG. Natural variation in the histone demethylase, KDM4C, influences expression levels of specific genes including those that affect cell growth. Genome Research. 24: 52-63. PMID 24285722 DOI: 10.1101/Gr.156141.113  0.76
2014 Nayak RR, Bernal WE, Lee JW, Kearns MJ, Cheung VG. Stress-induced changes in gene interactions in human cells. Nucleic Acids Research. 42: 1757-71. PMID 24170811 DOI: 10.1093/Nar/Gkt999  0.76
2014 Middlebrooks CD, Mukhopadhyay N, Tinker SW, Allen EG, Bean LJ, Begum F, Chowdhury R, Cheung V, Doheny K, Adams M, Feingold E, Sherman SL. Evidence for dysregulation of genome-wide recombination in oocytes with nondisjoined chromosomes 21. Human Molecular Genetics. 23: 408-17. PMID 24014426 DOI: 10.1093/Hmg/Ddt433  0.76
2013 Wang IX, So E, Devlin JL, Zhao Y, Wu M, Cheung VG. ADAR regulates RNA editing, transcript stability, and gene expression. Cell Reports. 5: 849-60. PMID 24183664 DOI: 10.1016/J.Celrep.2013.10.002  0.76
2012 Wilson Sayres MA, Brookes AJ, Chanock SJ, Cheung VG, Goldstein DB, Jin L, Kwok PY. HGV2011: personalized genomic medicine meets the incidentalome. Human Mutation. 33: 582-5. PMID 22170622 DOI: 10.1002/Humu.22008  0.76
2012 Oliver TR, Tinker SW, Allen EG, Hollis N, Locke AE, Bean LJ, Chowdhury R, Begum F, Marazita M, Cheung V, Feingold E, Sherman SL. Altered patterns of multiple recombinant events are associated with nondisjunction of chromosome 21. Human Genetics. 131: 1039-46. PMID 22160426 DOI: 10.1007/S00439-011-1121-7  0.76
2012 Smirnov DA, Brady L, Halasa K, Morley M, Solomon S, Cheung VG. Genetic variation in radiation-induced cell death. Genome Research. 22: 332-9. PMID 21844125 DOI: 10.1101/Gr.122044.111  0.76
2012 Li M, Wang IX, Cheung VG. Response to comments on "Widespread RNA and DNA sequence differences in the human transcriptome" Science. 335: 1302-f. DOI: 10.1126/Science.1210419  0.76
2011 Li M, Wang IX, Li Y, Bruzel A, Richards AL, Toung JM, Cheung VG. Widespread RNA and DNA sequence differences in the human transcriptome. Science (New York, N.Y.). 333: 53-8. PMID 21596952 DOI: 10.1126/Science.1207018  0.76
2011 Toung JM, Morley M, Li M, Cheung VG. RNA-sequence analysis of human B-cells. Genome Research. 21: 991-8. PMID 21536721 DOI: 10.1101/Gr.116335.110  0.76
2010 Cheung VG, Nayak RR, Wang IX, Elwyn S, Cousins SM, Morley M, Spielman RS. Polymorphic cis- and trans-regulation of human gene expression. Plos Biology. 8. PMID 20856902 DOI: 10.1371/Journal.Pbio.1000480  0.76
2010 Krewski D, Acosta D, Andersen M, Anderson H, Bailar JC, Boekelheide K, Brent R, Charnley G, Cheung VG, Green S, Kelsey KT, Kerkvliet NI, Li AA, McCray L, Meyer O, et al. Toxicity testing in the 21st century: a vision and a strategy. Journal of Toxicology and Environmental Health. Part B, Critical Reviews. 13: 51-138. PMID 20574894 DOI: 10.1080/10937404.2010.483176  0.76
2010 Dombroski BA, Nayak RR, Ewens KG, Ankener W, Cheung VG, Spielman RS. Gene expression and genetic variation in response to endoplasmic reticulum stress in human cells. American Journal of Human Genetics. 86: 719-29. PMID 20398888 DOI: 10.1016/J.Ajhg.2010.03.017  0.76
2010 Cheung VG, Sherman SL, Feingold E. Genetics. Genetic control of hotspots. Science (New York, N.Y.). 327: 791-2. PMID 20150474 DOI: 10.1126/Science.1187155  0.76
2009 Nayak RR, Kearns M, Spielman RS, Cheung VG. Coexpression network based on natural variation in human gene expression reveals gene interactions and functions. Genome Research. 19: 1953-62. PMID 19797678 DOI: 10.1101/Gr.097600.109  0.76
2009 Chowdhury R, Bois PR, Feingold E, Sherman SL, Cheung VG. Genetic analysis of variation in human meiotic recombination. Plos Genetics. 5: e1000648. PMID 19763160 DOI: 10.1371/Journal.Pgen.1000648  0.76
2009 Cheung VG, Spielman RS. Genetics of human gene expression: mapping DNA variants that influence gene expression. Nature Reviews. Genetics. 10: 595-604. PMID 19636342 DOI: 10.1038/Nrg2630  0.76
2009 Smirnov DA, Morley M, Shin E, Spielman RS, Cheung VG. Genetic analysis of radiation-induced changes in human gene expression. Nature. 459: 587-91. PMID 19349959 DOI: 10.1038/Nature07940  0.76
2008 Price AL, Patterson N, Hancks DC, Myers S, Reich D, Cheung VG, Spielman RS. Effects of cis and trans genetic ancestry on gene expression in African Americans. Plos Genetics. 4: e1000294. PMID 19057673 DOI: 10.1371/Journal.Pgen.1000294  0.76
2008 Smirnov DA, Cheung VG. ATM gene mutations result in both recessive and dominant expression phenotypes of genes and microRNAs. American Journal of Human Genetics. 83: 243-53. PMID 18674748 DOI: 10.1016/J.Ajhg.2008.07.003  0.76
2008 Cheung VG, Bruzel A, Burdick JT, Morley M, Devlin JL, Spielman RS. Monozygotic twins reveal germline contribution to allelic expression differences. American Journal of Human Genetics. 82: 1357-60. PMID 18513681 DOI: 10.1016/J.Ajhg.2008.05.003  0.76
2008 Oliver TR, Feingold E, Yu K, Cheung V, Tinker S, Yadav-Shah M, Masse N, Sherman SL. New insights into human nondisjunction of chromosome 21 in oocytes. Plos Genetics. 4: e1000033. PMID 18369452 DOI: 10.1371/Journal.Pgen.1000033  0.76
2008 Smirnov DA, Cheung VG. ATM Gene Mutations Result in Both Recessive and Dominant Expression Phenotypes of Genes and MicroRNAs (DOI:10.1016/j.ajhg.2008.07.003) American Journal of Human Genetics. 83: 657. DOI: 10.1016/J.Ajhg.2008.10.013  0.76
2008 Smirnov D, Cheung VG. Disruption of a transcriptional regulatory pathway contributes to phenotypes in carriers of ataxia telangiectasia Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4955: 410. DOI: 10.1007/978-3-540-78839-3_34  0.76
2007 Wang X, Tomso DJ, Chorley BN, Cho HY, Cheung VG, Kleeberger SR, Bell DA. Identification of polymorphic antioxidant response elements in the human genome. Human Molecular Genetics. 16: 1188-200. PMID 17409198 DOI: 10.1093/Hmg/Ddm066  0.76
2007 Cheung VG, Burdick JT, Hirschmann D, Morley M. Polymorphic variation in human meiotic recombination. American Journal of Human Genetics. 80: 526-30. PMID 17273974 DOI: 10.1086/512131  0.76
2007 Spielman RS, Bastone LA, Burdick JT, Morley M, Ewens WJ, Cheung VG. Common genetic variants account for differences in gene expression among ethnic groups. Nature Genetics. 39: 226-31. PMID 17206142 DOI: 10.1038/Ng1955  0.76
2007 Spielman RS, Cheung VG. Reply to "On the design and analysis of gene expression studies in human populations" [2] Nature Genetics. 39: 808-809. DOI: 10.1038/Ng0707-808  0.76
2006 Burdick JT, Chen WM, Abecasis GR, Cheung VG. In silico method for inferring genotypes in pedigrees. Nature Genetics. 38: 1002-4. PMID 16921375 DOI: 10.1038/Ng1863  0.76
2006 Cheung VG, Ewens WJ. Heterozygous carriers of Nijmegen Breakage Syndrome have a distinct gene expression phenotype. Genome Research. 16: 973-9. PMID 16809669 DOI: 10.1101/Gr.5320706  0.76
2006 Bruzel A, Cheung VG. DNA reassociation using oscillating phenol emulsions. Genomics. 87: 286-9. PMID 16310340 DOI: 10.1016/J.Ygeno.2005.09.021  0.76
2005 Cheung VG, Spielman RS, Ewens KG, Weber TM, Morley M, Burdick JT. Mapping determinants of human gene expression by regional and genome-wide association. Nature. 437: 1365-9. PMID 16251966 DOI: 10.1038/Nature04244  0.76
2005 Jen KY, Cheung VG. Identification of novel p53 target genes in ionizing radiation response. Cancer Research. 65: 7666-73. PMID 16140933 DOI: 10.1158/0008-5472.CAN-05-1039  0.76
2005 Cheung VG. Polymorphic landscape of the human genome. European Journal of Human Genetics : Ejhg. 13: 133-5. PMID 15536477 DOI: 10.1038/Sj.Ejhg.5201331  0.76
2004 Correa CR, Cheung VG. Genetic variation in radiation-induced expression phenotypes. American Journal of Human Genetics. 75: 885-90. PMID 15359380 DOI: 10.1086/425221  0.76
2004 Morley M, Molony CM, Weber TM, Devlin JL, Ewens KG, Spielman RS, Cheung VG. Genetic analysis of genome-wide variation in human gene expression. Nature. 430: 743-7. PMID 15269782 DOI: 10.1038/Nature02797  0.76
2004 Smirnov DA, Burdick JT, Morley M, Cheung VG. Method for manufacturing whole-genome microarrays by rolling circle amplification. Genes, Chromosomes & Cancer. 40: 72-7. PMID 15034872 DOI: 10.1002/Gcc.20015  0.76
2004 Smirnov D, Bruzel A, Morley M, Cheung VG. Direct IBD mapping: identical-by-descent mapping without genotyping. Genomics. 83: 335-45. PMID 14706463 DOI: 10.1016/J.Ygeno.2003.08.002  0.76
2003 Cheung VG, Jen KY, Weber T, Morley M, Devlin JL, Ewens KG, Spielman RS. Genetics of quantitative variation in human gene expression. Cold Spring Harbor Symposia On Quantitative Biology. 68: 403-7. PMID 15338642 DOI: 10.1101/Sqb.2003.68.403  0.76
2003 Jen KY, Cheung VG. Transcriptional response of lymphoblastoid cells to ionizing radiation. Genome Research. 13: 2092-100. PMID 12915489 DOI: 10.1101/Gr.1240103  0.76
2003 Cheung VG, Conlin LK, Weber TM, Arcaro M, Jen KY, Morley M, Spielman RS. Natural variation in human gene expression assessed in lymphoblastoid cells. Nature Genetics. 33: 422-5. PMID 12567189 DOI: 10.1038/Ng1094  0.76
2002 Cheung VG, Spielman RS. The genetics of variation in gene expression. Nature Genetics. 32: 522-5. PMID 12454648 DOI: 10.1038/Ng1036  0.76
2002 Cheung VG, Spielman RS. Bridging genetics and genomics in neurology. Neurologic Clinics. 20: 867-77, viii. PMID 12432833 DOI: 10.1016/S0733-8619(02)00003-8  0.76
2002 Watts JA, Morley M, Burdick JT, Fiori JL, Ewens WJ, Spielman RS, Cheung VG. Gene expression phenotype in heterozygous carriers of ataxia telangiectasia. American Journal of Human Genetics. 71: 791-800. PMID 12226795 DOI: 10.1086/342974  0.76
2001 Cheung VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS, Kim UJ, Kuo WL, Olivier M, Conroy J, Kasprzyk A, Massa H, Yonescu R, Sait S, et al. Integration of cytogenetic landmarks into the draft sequence of the human genome. Nature. 409: 953-8. PMID 11237021 DOI: 10.1038/35057192  0.76
2001 McPherson JD, Marra M, Hillier L, Waterston RH, Chinwalla A, Wallis J, Sekhon M, Wylie K, Mardis ER, Wilson RK, Fulton R, Kucaba TA, Wagner-McPherson C, Barbazuk WB, Gregory SG, ... ... Cheung VG, et al. A physical map of the human genome. Nature. 409: 934-41. PMID 11237014 DOI: 10.1038/35057157  0.76
2001 Morley M, Arcaro M, Burdick J, Yonescu R, Reid T, Kirsch IR, Cheung VG. GenMapDB: a database of mapped human BAC clones. Nucleic Acids Research. 29: 144-7. PMID 11125073 DOI: 10.1093/Nar/29.1.144  0.76
1999 Grant GR, Manduchi E, Cheung VG, Ewens WJ. Significance testing for direct identity-by-descent mapping Annals of Human Genetics. 63: 441-454. PMID 10735585 DOI: 10.1046/J.1469-1809.1999.6350441.X  0.76
1999 Cheung VG, Dalrymple HL, Narasimhan S, Watts J, Schuler G, Raap AK, Morley M, Bruzel A. A resource of mapped human bacterial artificial chromosome clones. Genome Research. 9: 989-93. PMID 10523527 DOI: 10.1101/Gr.9.10.989  0.76
1999 Cheung VG, Morley M, Aguilar F, Massimi A, Kucherlapati R, Childs G. Making and reading microarrays. Nature Genetics. 21: 15-9. PMID 9915495 DOI: 10.1038/4439  0.76
1999 Grant GR, Spielman RS, Manduchi E, Cheung VG, Ewens WJ. Significance testing for genomic mismatch scanning Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 182-187.  0.76
1998 Cheung VG, Gregg JP, Gogolin-Ewens KJ, Bandong J, Stanley CA, Baker L, Higgins MJ, Nowak NJ, Shows TB, Ewens WJ, Nelson SF, Spielman RS. Linkage-disequilibrium mapping without genotyping Nature Genetics. 18: 225-230. PMID 9500543 DOI: 10.1038/Ng0398-225  0.76
1998 Cheung VG, Nelson SF. Genomic mismatch scanning identifies human genomic DNA shared identical by descent Genomics. 47: 1-6. PMID 9465290 DOI: 10.1006/Geno.1997.5082  0.76
1997 Cheung VG, Boechat MI, Barrett CT. Bilateral Choanal Narrowing as a Presentation of Craniometaphyseal Dysplasia Journal of Perinatology. 17: 241-243. PMID 9210083  0.76
1996 Cheung VG, Nelson SF. Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA Proceedings of the National Academy of Sciences of the United States of America. 93: 14676-14679. PMID 8962113 DOI: 10.1073/Pnas.93.25.14676  0.76
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