A Keith Dunker - Publications

Biochemistry and Molecular Biology Indiana University, Bloomington, Bloomington, IN, United States 
Bioinformatics Biology, Biochemistry, General Biophysics

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Year Citation  Score
2016 Goh GK, Dunker AK, Uversky VN. Correlating Flavivirus virulence and levels of intrinsic disorder in shell proteins: protective roles vs. immune evasion. Molecular Biosystems. PMID 27102744 DOI: 10.1039/c6mb00228e  0.48
2015 Yan J, Dunker AK, Uversky VN, Kurgan L. Molecular recognition features (MoRFs) in three domains of life. Molecular Biosystems. PMID 26651072 DOI: 10.1039/c5mb00640f  0.36
2015 Dunker AK, Oldfield CJ. Back to the Future: Nuclear Magnetic Resonance and Bioinformatics Studies on Intrinsically Disordered Proteins. Advances in Experimental Medicine and Biology. 870: 1-34. PMID 26387098 DOI: 10.1007/978-3-319-20164-1_1  0.44
2015 Huang F, Oldfield CJ, Xue B, Hsu WL, Meng J, Liu X, Shen L, Romero P, Uversky VN, Dunker AK. Erratum to: Improving protein order-disorder classification using charge-hydropathy plots. Bmc Bioinformatics. 16: 241. PMID 26227315 DOI: 10.1186/s12859-015-0646-5  0.48
2015 Goh GK, Dunker AK, Uversky VN. Detection of links between Ebola nucleocapsid and virulence using disorder analysis. Molecular Biosystems. 11: 2337-44. PMID 26086270 DOI: 10.1039/c5mb00240k  0.48
2015 Goh GK, Dunker AK, Uversky VN. Shell disorder, immune evasion and transmission behaviors among human and animal retroviruses. Molecular Biosystems. 11: 2312-23. PMID 26080321 DOI: 10.1039/c5mb00277j  0.48
2015 Dolan PT, Roth AP, Xue B, Sun R, Dunker AK, Uversky VN, LaCount DJ. Intrinsic disorder mediates hepatitis C virus core-host cell protein interactions. Protein Science : a Publication of the Protein Society. 24: 221-35. PMID 25424537 DOI: 10.1002/pro.2608  0.48
2015 Dunker AK, Bondos SE, Huang F, Oldfield CJ. Intrinsically disordered proteins and multicellular organisms. Seminars in Cell & Developmental Biology. 37: 44-55. PMID 25307499 DOI: 10.1016/j.semcdb.2014.09.025  0.44
2014 Pejaver V, Hsu WL, Xin F, Dunker AK, Uversky VN, Radivojac P. The structural and functional signatures of proteins that undergo multiple events of post-translational modification. Protein Science : a Publication of the Protein Society. 23: 1077-93. PMID 24888500 DOI: 10.1002/pro.2494  0.36
2014 van der Lee R, Buljan M, Lang B, Weatheritt RJ, Daughdrill GW, Dunker AK, Fuxreiter M, Gough J, Gsponer J, Jones DT, Kim PM, Kriwacki RW, Oldfield CJ, Pappu RV, Tompa P, et al. Classification of intrinsically disordered regions and proteins. Chemical Reviews. 114: 6589-631. PMID 24773235 DOI: 10.1021/cr400525m  0.36
2014 Oldfield CJ, Dunker AK. Intrinsically disordered proteins and intrinsically disordered protein regions. Annual Review of Biochemistry. 83: 553-84. PMID 24606139 DOI: 10.1146/annurev-biochem-072711-164947  0.44
2014 Varadi M, Kosol S, Lebrun P, Valentini E, Blackledge M, Dunker AK, Felli IC, Forman-Kay JD, Kriwacki RW, Pierattelli R, Sussman J, Svergun DI, Uversky VN, Vendruscolo M, Wishart D, et al. pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins. Nucleic Acids Research. 42: D326-35. PMID 24174539 DOI: 10.1093/nar/gkt960  0.36
2014 Peng Z, Oldfield CJ, Xue B, Mizianty MJ, Dunker AK, Kurgan L, Uversky VN. A creature with a hundred waggly tails: intrinsically disordered proteins in the ribosome. Cellular and Molecular Life Sciences : Cmls. 71: 1477-504. PMID 23942625 DOI: 10.1007/s00018-013-1446-6  0.48
2013 Kallenbach J, Hsu WL, Dunker AK, Alterovitz G. Order-disorder interface characterization reveals critical factors for disease and drug targets. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2013: 101. PMID 24303310  0.48
2013 Goh GK, Dunker AK, Uversky V. Prediction of Intrinsic Disorder in MERS-CoV/HCoV-EMC Supports a High Oral-Fecal Transmission. Plos Currents. 5. PMID 24270586 DOI: 10.1371/currents.outbreaks.22254b58675cdebc256dbe3c5aa6498b  0.48
2013 Bhat-Nakshatri P, Song EK, Collins NR, Uversky VN, Dunker AK, O'Malley BW, Geistlinger TR, Carroll JS, Brown M, Nakshatri H. Interplay between estrogen receptor and AKT in estradiol-induced alternative splicing. Bmc Medical Genomics. 6: 21. PMID 23758675 DOI: 10.1186/1755-8794-6-21  0.36
2013 Gough J, Dunker AK. Sequences and topology: disorder, modularity, and post/pre translation modification. Current Opinion in Structural Biology. 23: 417-9. PMID 23721748 DOI: 10.1016/j.sbi.2013.05.001  0.36
2013 Buljan M, Chalancon G, Dunker AK, Bateman A, Balaji S, Fuxreiter M, Babu MM. Alternative splicing of intrinsically disordered regions and rewiring of protein interactions. Current Opinion in Structural Biology. 23: 443-50. PMID 23706950 DOI: 10.1016/j.sbi.2013.03.006  0.36
2013 Xue B, Romero PR, Noutsou M, Maurice MM, Rüdiger SG, William AM, Mizianty MJ, Kurgan L, Uversky VN, Dunker AK. Stochastic machines as a colocalization mechanism for scaffold protein function. Febs Letters. 587: 1587-91. PMID 23603389 DOI: 10.1016/j.febslet.2013.04.006  0.48
2013 Uversky VN, Dunker AK. The case for intrinsically disordered proteins playing contributory roles in molecular recognition without a stable 3D structure. F1000 Biology Reports. 5: 1. PMID 23361308 DOI: 10.3410/B5-1  0.48
2013 Xue B, Brown CJ, Dunker AK, Uversky VN. Intrinsically disordered regions of p53 family are highly diversified in evolution. Biochimica Et Biophysica Acta. 1834: 725-38. PMID 23352836 DOI: 10.1016/j.bbapap.2013.01.012  0.48
2013 Hsu WL, Oldfield CJ, Xue B, Meng J, Huang F, Romero P, Uversky VN, Dunker AK. Exploring the binding diversity of intrinsically disordered proteins involved in one-to-many binding. Protein Science : a Publication of the Protein Society. 22: 258-73. PMID 23233352 DOI: 10.1002/pro.2207  0.48
2013 Oldfield CJ, Xue B, Van YY, Ulrich EL, Markley JL, Dunker AK, Uversky VN. Utilization of protein intrinsic disorder knowledge in structural proteomics. Biochimica Et Biophysica Acta. 1834: 487-98. PMID 23232152 DOI: 10.1016/j.bbapap.2012.12.003  0.36
2013 Oates ME, Romero P, Ishida T, Ghalwash M, Mizianty MJ, Xue B, Dosztányi Z, Uversky VN, Obradovic Z, Kurgan L, Dunker AK, Gough J. D²P²: database of disordered protein predictions. Nucleic Acids Research. 41: D508-16. PMID 23203878 DOI: 10.1093/nar/gks1226  0.36
2013 Ota M, Koike R, Amemiya T, Tenno T, Romero PR, Hiroaki H, Dunker AK, Fukuchi S. An assignment of intrinsically disordered regions of proteins based on NMR structures. Journal of Structural Biology. 181: 29-36. PMID 23142703 DOI: 10.1016/j.jsb.2012.10.017  0.36
2012 Goh GK, Dunker AK, Uversky VN. Understanding Viral Transmission Behavior via Protein Intrinsic Disorder Prediction: Coronaviruses. Journal of Pathogens. 2012: 738590. PMID 23097708 DOI: 10.1155/2012/738590  0.48
2012 Santner AA, Croy CH, Vasanwala FH, Uversky VN, Van YY, Dunker AK. Sweeping away protein aggregation with entropic bristles: intrinsically disordered protein fusions enhance soluble expression. Biochemistry. 51: 7250-62. PMID 22924672 DOI: 10.1021/bi300653m  0.48
2012 Xue B, Dunker AK, Uversky VN. Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life. Journal of Biomolecular Structure & Dynamics. 30: 137-49. PMID 22702725 DOI: 10.1080/07391102.2012.675145  0.48
2012 Disfani FM, Hsu WL, Mizianty MJ, Oldfield CJ, Xue B, Dunker AK, Uversky VN, Kurgan L. MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins. Bioinformatics (Oxford, England). 28: i75-83. PMID 22689782 DOI: 10.1093/bioinformatics/bts209  0.48
2012 Johnson DE, Xue B, Sickmeier MD, Meng J, Cortese MS, Oldfield CJ, Le Gall T, Dunker AK, Uversky VN. High-throughput characterization of intrinsic disorder in proteins from the Protein Structure Initiative. Journal of Structural Biology. 180: 201-15. PMID 22651963 DOI: 10.1016/j.jsb.2012.05.013  0.36
2012 Xue B, Dunker AK, Uversky VN. The roles of intrinsic disorder in orchestrating the Wnt-pathway. Journal of Biomolecular Structure & Dynamics. 29: 843-61. PMID 22292947 DOI: 10.1080/073911012010525024  0.48
2012 Liu J, Li S, Dunker AK, Uversky VN. Molecular profiling: an essential technology enabling personalized medicine in breast cancer. Current Drug Targets. 13: 541-54. PMID 22250651 DOI: 10.2174/138945012799499767  0.48
2012 Uversky VN, Dunker AK. Multiparametric analysis of intrinsically disordered proteins: looking at intrinsic disorder through compound eyes. Analytical Chemistry. 84: 2096-104. PMID 22242801 DOI: 10.1021/ac203096k  0.48
2012 Zhang T, Faraggi E, Xue B, Dunker AK, Uversky VN, Zhou Y. SPINE-D: accurate prediction of short and long disordered regions by a single neural-network based method. Journal of Biomolecular Structure & Dynamics. 29: 799-813. PMID 22208280 DOI: 10.1080/073911012010525022  0.36
2012 Huang F, Oldfield C, Meng J, Hsu WL, Xue B, Uversky VN, Romero P, Dunker AK. Subclassifying disordered proteins by the CH-CDF plot method. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 128-39. PMID 22174269  0.48
2012 Hsu WL, Oldfield C, Meng J, Huang F, Xue B, Uversky VN, Romero P, Dunker AK. Intrinsic protein disorder and protein-protein interactions. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 116-27. PMID 22174268  0.48
2012 Ghalwash MF, Dunker AK, Obradovi? Z. Uncertainty analysis in protein disorder prediction. Molecular Biosystems. 8: 381-91. PMID 22101336 DOI: 10.1039/c1mb05373f  0.36
2012 Xue B, Oldfield CJ, Van YY, Dunker AK, Uversky VN. Protein intrinsic disorder and induced pluripotent stem cells. Molecular Biosystems. 8: 134-50. PMID 21761058 DOI: 10.1039/c1mb05163f  0.48
2012 Oldfield CJ, Xue B, Dunker AK, Uversky VN. Binding promiscuity of unfolded peptides Protein and Peptide Folding, Misfolding, and Non-Folding. 239-277. DOI: 10.1002/9781118183373.ch9  0.36
2012 Chen J, Cheng J, Dunker AK. Intrinsically disordered proteins: Analysis, prediction, simulation, and biology 17th Pacific Symposium On Biocomputing, Psb 2012. 67-69.  0.64
2011 Hu Y, Liu Y, Jung J, Dunker AK, Wang Y. Changes in predicted protein disorder tendency may contribute to disease risk. Bmc Genomics. 12: S2. PMID 22369681 DOI: 10.1186/1471-2164-12-S5-S2  0.36
2011 Xue B, Soeria-Atmadja D, Gustafsson MG, Hammerling U, Dunker AK, Uversky VN. Abundance and functional roles of intrinsic disorder in allergenic proteins and allergen representative peptides. Proteins. 79: 2595-606. PMID 21732419 DOI: 10.1002/prot.23077  0.48
2011 Sun X, Xue B, Jones WT, Rikkerink E, Dunker AK, Uversky VN. A functionally required unfoldome from the plant kingdom: intrinsically disordered N-terminal domains of GRAS proteins are involved in molecular recognition during plant development. Plant Molecular Biology. 77: 205-23. PMID 21732203 DOI: 10.1007/s11103-011-9803-z  0.48
2011 Mizianty MJ, Zhang T, Xue B, Zhou Y, Dunker AK, Uversky VN, Kurgan L. In-silico prediction of disorder content using hybrid sequence representation. Bmc Bioinformatics. 12: 245. PMID 21682902 DOI: 10.1186/1471-2105-12-245  0.48
2011 Sanchez EJ, Munske GR, Criswell A, Milting H, Dunker AK, Kang C. Phosphorylation of human calsequestrin: implications for calcium regulation. Molecular and Cellular Biochemistry. 353: 195-204. PMID 21416293 DOI: 10.1007/s11010-011-0787-4  0.36
2011 Dixon SE, Bhatti MM, Uversky VN, Dunker AK, Sullivan WJ. Regions of intrinsic disorder help identify a novel nuclear localization signal in Toxoplasma gondii histone acetyltransferase TgGCN5-B. Molecular and Biochemical Parasitology. 175: 192-5. PMID 21055425 DOI: 10.1016/j.molbiopara.2010.10.009  0.48
2010 Xue B, Dunker AK, Uversky VN. Retro-MoRFs: identifying protein binding sites by normal and reverse alignment and intrinsic disorder prediction. International Journal of Molecular Sciences. 11: 3725-47. PMID 21152297 DOI: 10.3390/ijms11103725  0.48
2010 Yang JY, Niemierko A, Bajcsy R, Xu D, Athey BD, Zhang A, Ersoy OK, Li GZ, Borodovsky M, Zhang JC, Arabnia HR, Deng Y, Dunker AK, Liu Y, Ghafoor A. 2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research. Bmc Genomics. 11: I1. PMID 21143775 DOI: 10.1186/1471-2164-11-S3-I1  0.36
2010 Dunker AK, Uversky VN. Drugs for 'protein clouds': targeting intrinsically disordered transcription factors. Current Opinion in Pharmacology. 10: 782-8. PMID 20889377 DOI: 10.1016/j.coph.2010.09.005  0.48
2010 Xue B, Williams RW, Oldfield CJ, Dunker AK, Uversky VN. Archaic chaos: intrinsically disordered proteins in Archaea. Bmc Systems Biology. 4: S1. PMID 20522251 DOI: 10.1186/1752-0509-4-S1-S1  0.36
2010 Xue B, Hsu WL, Lee JH, Lu H, Dunker AK, Uversky VN. SPA: Short peptide analyzer of intrinsic disorder status of short peptides. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 15: 635-46. PMID 20497238 DOI: 10.1111/j.1365-2443.2010.01407.x  0.48
2010 Xue B, Williams RW, Oldfield CJ, Goh GK, Dunker AK, Uversky VN. Viral disorder or disordered viruses: do viral proteins possess unique features? Protein and Peptide Letters. 17: 932-51. PMID 20450483 DOI: 10.2174/092986610791498984  0.36
2010 Uversky VN, Dunker AK. Understanding protein non-folding. Biochimica Et Biophysica Acta. 1804: 1231-64. PMID 20117254 DOI: 10.1016/j.bbapap.2010.01.017  0.48
2010 Sun X, Jones WT, Harvey D, Edwards PJ, Pascal SM, Kirk C, Considine T, Sheerin DJ, Rakonjac J, Oldfield CJ, Xue B, Dunker AK, Uversky VN. N-terminal domains of DELLA proteins are intrinsically unstructured in the absence of interaction with GID1/gibberellic acid receptors. The Journal of Biological Chemistry. 285: 11557-71. PMID 20103592 DOI: 10.1074/jbc.M109.027011  0.48
2010 Xue B, Dunbrack RL, Williams RW, Dunker AK, Uversky VN. PONDR-FIT: a meta-predictor of intrinsically disordered amino acids. Biochimica Et Biophysica Acta. 1804: 996-1010. PMID 20100603 DOI: 10.1016/j.bbapap.2010.01.011  0.36
2009 Midic U, Oldfield CJ, Dunker AK, Obradovic Z, Uversky VN. Unfoldomics of human genetic diseases: illustrative examples of ordered and intrinsically disordered members of the human diseasome. Protein and Peptide Letters. 16: 1533-47. PMID 20001916 DOI: 10.2174/092986609789839377  0.36
2009 He B, Wang K, Liu Y, Xue B, Uversky VN, Dunker AK. Predicting intrinsic disorder in proteins: an overview. Cell Research. 19: 929-49. PMID 19597536 DOI: 10.1038/cr.2009.87  0.48
2009 Uversky VN, Oldfield CJ, Midic U, Xie H, Xue B, Vucetic S, Iakoucheva LM, Obradovic Z, Dunker AK. Unfoldomics of human diseases: linking protein intrinsic disorder with diseases. Bmc Genomics. 10: S7. PMID 19594884 DOI: 10.1186/1471-2164-10-S1-S7  0.48
2009 Midic U, Oldfield CJ, Dunker AK, Obradovic Z, Uversky VN. Protein disorder in the human diseasome: unfoldomics of human genetic diseases. Bmc Genomics. 10: S12. PMID 19594871 DOI: 10.1186/1471-2164-10-S1-S12  0.48
2009 Xue B, Li L, Meroueh SO, Uversky VN, Dunker AK. Analysis of structured and intrinsically disordered regions of transmembrane proteins. Molecular Biosystems. 5: 1688-1702. PMID 19585006 DOI: 10.1039/B905913J  0.48
2009 Goh GK, Dunker AK, Uversky VN. Protein intrinsic disorder and influenza virulence: the 1918 H1N1 and H5N1 viruses. Virology Journal. 6: 69. PMID 19493338 DOI: 10.1186/1743-422X-6-69  0.48
2009 Xue B, Oldfield CJ, Dunker AK, Uversky VN. CDF it all: consensus prediction of intrinsically disordered proteins based on various cumulative distribution functions. Febs Letters. 583: 1469-74. PMID 19351533 DOI: 10.1016/j.febslet.2009.03.070  0.48
2009 Tompa P, Fuxreiter M, Oldfield CJ, Simon I, Dunker AK, Uversky VN. Close encounters of the third kind: disordered domains and the interactions of proteins. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 31: 328-35. PMID 19260013 DOI: 10.1002/bies.200800151  0.48
2009 Liang S, Li L, Hsu WL, Pilcher MN, Uversky V, Zhou Y, Dunker AK, Meroueh SO. Exploring the molecular design of protein interaction sites with molecular dynamics simulations and free energy calculations. Biochemistry. 48: 399-414. PMID 19113835 DOI: 10.1021/bi8017043  0.48
2008 Tóth-Petróczy A, Oldfield CJ, Simon I, Takagi Y, Dunker AK, Uversky VN, Fuxreiter M. Malleable machines in transcription regulation: the mediator complex. Plos Computational Biology. 4: e1000243. PMID 19096501 DOI: 10.1371/journal.pcbi.1000243  0.48
2008 Uversky VN, Dunker AK. Biochemistry. Controlled chaos. Science (New York, N.Y.). 322: 1340-1. PMID 19039128 DOI: 10.1126/science.1167453  0.48
2008 Campen A, Williams RM, Brown CJ, Meng J, Uversky VN, Dunker AK. TOP-IDP-scale: a new amino acid scale measuring propensity for intrinsic disorder. Protein and Peptide Letters. 15: 956-63. PMID 18991772 DOI: 10.2174/092986608785849164  0.48
2008 Dunker AK, Silman I, Uversky VN, Sussman JL. Function and structure of inherently disordered proteins Current Opinion in Structural Biology. 18: 756-764. PMID 18952168 DOI: 10.1016/j.sbi.2008.10.002  0.36
2008 Goh GK, Dunker AK, Uversky VN. A comparative analysis of viral matrix proteins using disorder predictors. Virology Journal. 5: 126. PMID 18947403 DOI: 10.1186/1743-422X-5-126  0.48
2008 Goh GK, Dunker AK, Uversky VN. Protein intrinsic disorder toolbox for comparative analysis of viral proteins. Bmc Genomics. 9: S4. PMID 18831795 DOI: 10.1186/1471-2164-9-S2-S4  0.48
2008 Ren S, Uversky VN, Chen Z, Dunker AK, Obradovic Z. Short Linear Motifs recognized by SH2, SH3 and Ser/Thr Kinase domains are conserved in disordered protein regions. Bmc Genomics. 9: S26. PMID 18831792 DOI: 10.1186/1471-2164-9-S2-S26  0.48
2008 Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, Uversky VN. The unfoldomics decade: an update on intrinsically disordered proteins. Bmc Genomics. 9: S1. PMID 18831774 DOI: 10.1186/1471-2164-9-S2-S1  0.48
2008 Liu J, Campen A, Huang S, Peng SB, Ye X, Palakal M, Dunker AK, Xia Y, Li S. Identification of a gene signature in cell cycle pathway for breast cancer prognosis using gene expression profiling data. Bmc Medical Genomics. 1: 39. PMID 18786252 DOI: 10.1186/1755-8794-1-39  0.48
2008 Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, Mana M, de Lichtervelde L, Mul JD, van de Peut D, Devos M, Simonis N, Yildirim MA, Cokol M, Kao HL, de Smet AS, ... ... Dunker AK, et al. A protein domain-based interactome network for C. elegans early embryogenesis. Cell. 134: 534-45. PMID 18692475 DOI: 10.1016/j.cell.2008.07.009  0.36
2008 Cortese MS, Uversky VN, Dunker AK. Intrinsic disorder in scaffold proteins: getting more from less. Progress in Biophysics and Molecular Biology. 98: 85-106. PMID 18619997 DOI: 10.1016/j.pbiomolbio.2008.05.007  0.48
2008 Uversky VN, Oldfield CJ, Dunker AK. Intrinsically disordered proteins in human diseases: introducing the D2 concept. Annual Review of Biophysics. 37: 215-46. PMID 18573080 DOI: 10.1146/annurev.biophys.37.032807.125924  0.48
2008 Rantalainen KI, Uversky VN, Permi P, Kalkkinen N, Dunker AK, Mäkinen K. Potato virus A genome-linked protein VPg is an intrinsically disordered molten globule-like protein with a hydrophobic core. Virology. 377: 280-8. PMID 18533220 DOI: 10.1016/j.virol.2008.04.025  0.48
2008 Paliy O, Gargac SM, Cheng Y, Uversky VN, Dunker AK. Protein disorder is positively correlated with gene expression in Escherichia coli. Journal of Proteome Research. 7: 2234-45. PMID 18465893 DOI: 10.1021/pr800055r  0.48
2008 Yang JY, Yang MQ, Dunker AK, Deng Y, Huang X. Investigation of transmembrane proteins using a computational approach. Bmc Genomics. 9: S7. PMID 18366620 DOI: 10.1186/1471-2164-9-S1-S7  0.36
2008 Oldfield CJ, Meng J, Yang JY, Yang MQ, Uversky VN, Dunker AK. Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners. Bmc Genomics. 9: S1. PMID 18366598 DOI: 10.1186/1471-2164-9-S1-S1  0.48
2008 Mohan A, Sullivan WJ, Radivojac P, Dunker AK, Uversky VN. Intrinsic disorder in pathogenic and non-pathogenic microbes: discovering and analyzing the unfoldomes of early-branching eukaryotes. Molecular Biosystems. 4: 328-40. PMID 18354786 DOI: 10.1039/b719168e  0.36
2008 Dunker AK, Uversky VN. Signal transduction via unstructured protein conduits. Nature Chemical Biology. 4: 229-30. PMID 18347590 DOI: 10.1038/nchembio0408-229  0.48
2008 Zhang W, Dunker AK, Zhou Y. Assessing secondary structure assignment of protein structures by using pairwise sequence-alignment benchmarks. Proteins. 71: 61-7. PMID 17932927 DOI: 10.1002/prot.21654  0.48
2007 Midic U, Dunker AK, Obradovic Z. Exploring alternative knowledge representations for protein secondary-structure prediction. International Journal of Data Mining and Bioinformatics. 1: 286-313. PMID 18399076 DOI: 10.1504/IJDMB.2007.011614  0.36
2007 Uversky VN, Radivojac P, Iakoucheva LM, Obradovic Z, Dunker AK. Prediction of intrinsic disorder and its use in functional proteomics. Methods in Molecular Biology (Clifton, N.J.). 408: 69-92. PMID 18314578  0.36
2007 Li L, Uversky VN, Dunker AK, Meroueh SO. A computational investigation of allostery in the catabolite activator protein. Journal of the American Chemical Society. 129: 15668-76. PMID 18041838 DOI: 10.1021/ja076046a  0.48
2007 Cheng Y, Oldfield CJ, Meng J, Romero P, Uversky VN, Dunker AK. Mining alpha-helix-forming molecular recognition features with cross species sequence alignments. Biochemistry. 46: 13468-77. PMID 17973494 DOI: 10.1021/bi7012273  0.48
2007 Hurley TD, Yang J, Zhang L, Goodwin KD, Zou Q, Cortese M, Dunker AK, DePaoli-Roach AA. Structural basis for regulation of protein phosphatase 1 by inhibitor-2. The Journal of Biological Chemistry. 282: 28874-83. PMID 17636256 DOI: 10.1074/jbc.M703472200  0.36
2007 Vacic V, Uversky VN, Dunker AK, Lonardi S. Composition Profiler: a tool for discovery and visualization of amino acid composition differences. Bmc Bioinformatics. 8: 211. PMID 17578581 DOI: 10.1186/1471-2105-8-211  0.48
2007 Vacic V, Oldfield CJ, Mohan A, Radivojac P, Cortese MS, Uversky VN, Dunker AK. Characterization of molecular recognition features, MoRFs, and their binding partners. Journal of Proteome Research. 6: 2351-66. PMID 17488107 DOI: 10.1021/pr0701411  0.36
2007 Xie H, Vucetic S, Iakoucheva LM, Oldfield CJ, Dunker AK, Obradovic Z, Uversky VN. Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins. Journal of Proteome Research. 6: 1917-32. PMID 17391016 DOI: 10.1021/pr060394e  0.48
2007 Vucetic S, Xie H, Iakoucheva LM, Oldfield CJ, Dunker AK, Obradovic Z, Uversky VN. Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions. Journal of Proteome Research. 6: 1899-916. PMID 17391015 DOI: 10.1021/pr060393m  0.48
2007 Xie H, Vucetic S, Iakoucheva LM, Oldfield CJ, Dunker AK, Uversky VN, Obradovic Z. Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions. Journal of Proteome Research. 6: 1882-98. PMID 17391014 DOI: 10.1021/pr060392u  0.48
2007 Le Gall T, Romero PR, Cortese MS, Uversky VN, Dunker AK. Intrinsic disorder in the Protein Data Bank. Journal of Biomolecular Structure & Dynamics. 24: 325-42. PMID 17206849 DOI: 10.1080/07391102.2007.10507123  0.48
2007 Radivojac P, Iakoucheva LM, Oldfield CJ, Obradovic Z, Uversky VN, Dunker AK. Intrinsic disorder and functional proteomics. Biophysical Journal. 92: 1439-56. PMID 17158572 DOI: 10.1529/biophysj.106.094045  0.36
2007 Sickmeier M, Hamilton JA, LeGall T, Vacic V, Cortese MS, Tantos A, Szabo B, Tompa P, Chen J, Uversky VN, Obradovic Z, Dunker AK. DisProt: the Database of Disordered Proteins. Nucleic Acids Research. 35: D786-93. PMID 17145717 DOI: 10.1093/nar/gkl893  0.48
2007 Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Obradovic Z, Uversky VN. Intrinsically disordered proteins: An update Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 49-58. DOI: 10.1109/BIBE.2007.4375544  0.32
2006 Cheng Y, LeGall T, Oldfield CJ, Dunker AK, Uversky VN. Abundance of intrinsic disorder in protein associated with cardiovascular disease. Biochemistry. 45: 10448-60. PMID 16939197 DOI: 10.1021/bi060981d  0.48
2006 Mohan A, Oldfield CJ, Radivojac P, Vacic V, Cortese MS, Dunker AK, Uversky VN. Analysis of molecular recognition features (MoRFs). Journal of Molecular Biology. 362: 1043-59. PMID 16935303 DOI: 10.1016/j.jmb.2006.07.087  0.36
2006 Uversky VN, Roman A, Oldfield CJ, Dunker AK. Protein intrinsic disorder and human papillomaviruses: increased amount of disorder in E6 and E7 oncoproteins from high risk HPVs. Journal of Proteome Research. 5: 1829-42. PMID 16889404 DOI: 10.1021/pr0602388  0.48
2006 Cheng Y, LeGall T, Oldfield CJ, Mueller JP, Van YY, Romero P, Cortese MS, Uversky VN, Dunker AK. Rational drug design via intrinsically disordered protein. Trends in Biotechnology. 24: 435-42. PMID 16876893 DOI: 10.1016/j.tibtech.2006.07.005  0.48
2006 Liu J, Perumal NB, Oldfield CJ, Su EW, Uversky VN, Dunker AK. Intrinsic disorder in transcription factors. Biochemistry. 45: 6873-88. PMID 16734424 DOI: 10.1021/bi0602718  0.48
2006 Romero PR, Zaidi S, Fang YY, Uversky VN, Radivojac P, Oldfield CJ, Cortese MS, Sickmeier M, LeGall T, Obradovic Z, Dunker AK. Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms. Proceedings of the National Academy of Sciences of the United States of America. 103: 8390-5. PMID 16717195 DOI: 10.1073/pnas.0507916103  0.36
2006 Peng K, Radivojac P, Vucetic S, Dunker AK, Obradovic Z. Length-dependent prediction of protein intrinsic disorder. Bmc Bioinformatics. 7: 208. PMID 16618368 DOI: 10.1186/1471-2105-7-208  0.36
2006 Chen JW, Romero P, Uversky VN, Dunker AK. Conservation of intrinsic disorder in protein domains and families: II. Functions of conserved disorder Journal of Proteome Research. 5: 888-898. PMID 16602696 DOI: 10.1021/pr060049p  0.48
2006 Chen JW, Romero P, Uversky VN, Dunker AK. Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions Journal of Proteome Research. 5: 879-887. PMID 16602695 DOI: 10.1021/pr060048x  0.48
2002 Yang J, Powers JR, Clark S, Dunker AK, Swanson BG. Hydrophobic probe binding of beta-lactoglobulin in the native and molten globule state induced by high pressure as affected by pH, KIO(3) and N-ethylmaleimide. Journal of Agricultural and Food Chemistry. 50: 5207-14. PMID 12188631 DOI: 10.1021/jf020221j  0.32
2001 Yang J, Dunker AK, Powers JR, Clark S, Swanson BG. β-Lactoglobulin molten globule induced by high pressure Journal of Agricultural and Food Chemistry. 49: 3236-3243. PMID 11453757 DOI: 10.1021/jf001226o  0.36
2000 Li X, Obradovic Z, Brown CJ, Garner EC, Dunker AK. Comparing predictors of disordered protein. Genome Informatics. Workshop On Genome Informatics. 11: 172-84. PMID 11700598  0.36
1998 Wang S, Trumble WR, Liao H, Wesson CR, Dunker AK, Kang C. Crystal structure of calsequestrin from rabbit skeletal muscle sarcoplasmic reticulum Nature Structural Biology. 5: 476-483. PMID 9628486 DOI: 10.1038/nsb0698-476  0.32
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