Ross C. Hardison, Ph.D. - Related publications

Affiliations: 
1980- Biochemistry, Microbiology, and Molecular biology Pennsylvania State University, State College, PA, United States 
Area:
Biochemistry, Molecular Biology, Genomics, Epigenomics, Gene Regulation
Website:
http://www.bx.psu.edu/~ross/
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Takeda I, Araki M, Ishiguro KI, Ohga T, Takada K, Yamaguchi Y, Hashimoto K, Kai T, Nakagata N, Imasaka M, Yoshinobu K, Araki K. Gene trapping reveals a new transcriptionally active genome element: The chromosome-specific clustered trap region. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. PMID 34418226 DOI: 10.1111/gtc.12890   
2021 Umarov R, Li Y, Arakawa T, Takizawa S, Gao X, Arner E. ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation. Plos Computational Biology. 17: e1009376. PMID 34491989 DOI: 10.1371/journal.pcbi.1009376   
2021 Macioszek A, Wilczynski B. HERON: A Novel Tool Enables Identification of Long, Weakly Enriched Genomic Domains in ChIP-seq Data. International Journal of Molecular Sciences. 22. PMID 34360892 DOI: 10.3390/ijms22158123   
2021 Conde C, Price-Carter M, Cochard T, Branger M, Stevenson K, Whittington R, Bannantine JP, Biet F. Whole-Genome Analysis of subsp. IS -. Frontiers in Microbiology. 12: 660002. PMID 34040595 DOI: 10.3389/fmicb.2021.660002   
2021 Guerrini MM, Oguchi A, Suzuki A, Murakawa Y. Cap analysis of gene expression (CAGE) and noncoding regulatory elements. Seminars in Immunopathology. PMID 34468849 DOI: 10.1007/s00281-021-00886-5   
2021 Woodhouse MR, Sen S, Schott D, Portwood JL, Freeling M, Walley JW, Andorf CM, Schnable JC. qTeller: A tool for comparative multi-genomic gene expression analysis. Bioinformatics (Oxford, England). PMID 34406385 DOI: 10.1093/bioinformatics/btab604   
2021 Shan Y, Pei X, Yong S, Li J, Qin Q, Zeng S, Yu J. Analysis of the complete chloroplast genomes of and (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 2672-2680. PMID 34435116 DOI: 10.1080/23802359.2021.1920491   
2021 Spradling TA, Place AC, Campbell AL, Demastes JW. Mitochondrial genome of Geomydoecus aurei, a pocket-gopher louse. Plos One. 16: e0254138. PMID 34314423 DOI: 10.1371/journal.pone.0254138   
2021 Pang J, Hu W, Wang W, Li J, Mao K. The complete chloroplast genome of , a Critically Endangered species in New Caledonia. Mitochondrial Dna. Part B, Resources. 6: 2648-2649. PMID 34409167 DOI: 10.1080/23802359.2021.1964399   
2021 Anene-Nzelu CG, Lee MCJ, Tan WLW, Dashi A, Foo RSY. Genomic enhancers in cardiac development and disease. Nature Reviews. Cardiology. PMID 34381190 DOI: 10.1038/s41569-021-00597-2   
2021 Chen Z, Shen M, Mao C, Wang C, Yuan P, Wang T, Sun D. A Type I Restriction Modification System Influences Genomic Evolution Driven by Horizontal Gene Transfer in . Frontiers in Microbiology. 12: 709571. PMID 34413842 DOI: 10.3389/fmicb.2021.709571   
2021 Prowse-Wilkins CP, Wang J, Xiang R, Garner JB, Goddard ME, Chamberlain AJ. Putative Causal Variants Are Enriched in Annotated Functional Regions From Six Bovine Tissues. Frontiers in Genetics. 12: 664379. PMID 34249087 DOI: 10.3389/fgene.2021.664379   
2021 Glaser J, Mundlos S. 3D or Not 3D: Shaping the Genome during Development. Cold Spring Harbor Perspectives in Biology. PMID 34312246 DOI: 10.1101/cshperspect.a040188   
2021 Tu JL, Bai XY, Xu YL, Li N, Xu JW. Targeted gene insertion and replacement in the basidiomycete by inactivation of non-homologous end joining using CRISPR/Cas9. Applied and Environmental Microbiology. AEM0151021. PMID 34524900 DOI: 10.1128/AEM.01510-21   
2021 Willemin A, Lopez-Delisle L, Bolt CC, Gadolini ML, Duboule D, Rodriguez-Carballo E. Induction of a chromatin boundary in vivo upon insertion of a TAD border. Plos Genetics. 17: e1009691. PMID 34292939 DOI: 10.1371/journal.pgen.1009691   
2021 Lin S, Song B, Morse D. Spatial organization of dinoflagellate genomes: novel insights and remaining critical questions. Journal of Phycology. PMID 34389979 DOI: 10.1111/jpy.13206   
2021 Huang CH, Chen CC, Lin YC, Chen CH, Lee AY, Liou JS, Gu CT, Huang L. The Gene as a Genome-Wide Taxonomic Marker for High Resolution Discrimination of and Its Closely Related Taxa. Microorganisms. 9. PMID 34442649 DOI: 10.3390/microorganisms9081570   
2021 Yuan XL, Zhang CS, Kong FY, Zhang ZF, Wang FL. Genome Analysis of JM01 Provides Insights into Its Pathogenicity Mechanisms. Plants (Basel, Switzerland). 10. PMID 34451665 DOI: 10.3390/plants10081620   
2021 Ehmsen KT, Knuesel MT, Martinez D, Asahina M, Aridomi H, Yamamoto KR. Computational resources to define alleles and altered regulatory motifs at genomically edited candidate response elements. Nucleic Acids Research. PMID 34417596 DOI: 10.1093/nar/gkab700   
2021 Wakao S, Shih PM, Guan K, Schackwitz W, Ye J, Patel D, Shih RM, Dent RM, Chovatia M, Sharma A, Martin J, Wei CL, Niyogi KK. Discovery of photosynthesis genes through whole-genome sequencing of acetate-requiring mutants of Chlamydomonas reinhardtii. Plos Genetics. 17: e1009725. PMID 34492001 DOI: 10.1371/journal.pgen.1009725   
2021 Alzahrani D, Albokhari E, Yaradua S, Abba A. Complete chloroplast genome sequences of and and other Cleomaceae Species, comparative analysis and phylogenetic relationships. Saudi Journal of Biological Sciences. 28: 2476-2490. PMID 33911961 DOI: 10.1016/j.sjbs.2021.01.049   
2021 Oliveira J, Antunes M, Godinho CP, Teixeira MC, Sá-Correia I, Monteiro PT. From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon. Bmc Bioinformatics. 22: 399. PMID 34376148 DOI: 10.1186/s12859-021-04312-3   
2021 Tay AP, Hosking B, Hosking C, Bauer DC, Wilson LOW. INSIDER: alignment-free detection of foreign DNA sequences. Computational and Structural Biotechnology Journal. 19: 3810-3816. PMID 34285780 DOI: 10.1016/j.csbj.2021.06.045   
2021 Tay AP, Hosking B, Hosking C, Bauer DC, Wilson LOW. INSIDER: alignment-free detection of foreign DNA sequences. Computational and Structural Biotechnology Journal. 19: 3810-3816. PMID 34285780 DOI: 10.1016/j.csbj.2021.06.045   
2021 Yates TB, Feng K, Zhang J, Singan V, Jawdy SS, Gunter LE, Ranjan P, Abraham PE, Barry K, Lipzen A, Pan C, Schmutz J, Chen JG, Tuskan GA, Muchero W. The ancient Salicoid genome duplication event: A platform for reconstruction of de Novo gene evolution in Populus trichocarpa. Genome Biology and Evolution. PMID 34469536 DOI: 10.1093/gbe/evab198   
2021 Xia H, Liu X, Wang Y, Li X, Wang J, Jin C. The complete chloroplast genome sequence of (Bambusoideae). Mitochondrial Dna. Part B, Resources. 6: 2184-2185. PMID 34345678 DOI: 10.1080/23802359.2021.1944373   
2021 Ali A, Thorgaard GH, Salem M. PacBio Iso-Seq Improves the Rainbow Trout Genome Annotation and Identifies Alternative Splicing Associated With Economically Important Phenotypes. Frontiers in Genetics. 12: 683408. PMID 34335690 DOI: 10.3389/fgene.2021.683408   
2021 Fioretti T, Di Iorio V, Lombardo B, De Falco F, Cevenini A, Cattaneo F, Testa F, Pastore L, Simonelli F, Esposito G. Molecular Characterization of Choroideremia-Associated Deletions Reveals an Unexpected Regulation of Gene Transcription. Genes. 12. PMID 34440285 DOI: 10.3390/genes12081111   
2021 Ju X, Shi G, Chen S, Dai W, He T. Characterization and phylogenetic analysis of the complete chloroplast genome of (Liliaceae). Mitochondrial Dna. Part B, Resources. 6: 2750-2751. PMID 34471694 DOI: 10.1080/23802359.2021.1967799   
2021 Kamal SM, Simpson DJ, Wang Z, Gänzle M, Römling U. Horizontal Transmission of Stress Resistance Genes Shape the Ecology of Beta- and Gamma-Proteobacteria. Frontiers in Microbiology. 12: 696522. PMID 34295324 DOI: 10.3389/fmicb.2021.696522   
2021 Grankvist A, Jaén-Luchoro D, Wass L, Sikora P, Wennerås C. Comparative Genomics of Clinical Isolates of the Emerging Tick-Borne Pathogen . Microorganisms. 9. PMID 34361922 DOI: 10.3390/microorganisms9071488   
2021 Gómez I, López MC, Rastrojo A, Lorenzo-Díaz F, Requena JM, Aguado B, Valladares B, Thomas MC. Variability of the Pr77 sequence of L1Tc retrotransposon among six T. cruzi strains belonging to different discrete typing units (DTUs). Acta Tropica. 222: 106053. PMID 34273311 DOI: 10.1016/j.actatropica.2021.106053   
2021 Gómez I, López MC, Rastrojo A, Lorenzo-Díaz F, Requena JM, Aguado B, Valladares B, Thomas MC. Variability of the Pr77 sequence of L1Tc retrotransposon among six T. cruzi strains belonging to different discrete typing units (DTUs). Acta Tropica. 222: 106053. PMID 34273311 DOI: 10.1016/j.actatropica.2021.106053   
2021 Li S, Shen F, Zhang S, Niu J, Niu Y, Li L, Zhao J. The complete chloroplast genome of (Hampe ex Ochi) Z. Iwatsuki and T. J. Koponen. Mitochondrial Dna. Part B, Resources. 6: 2632-2634. PMID 34409162 DOI: 10.1080/23802359.2021.1962759   
2021 Kuzmin E, Taylor JS, Boone C. Retention of duplicated genes in evolution. Trends in Genetics : Tig. PMID 34294428 DOI: 10.1016/j.tig.2021.06.016   
2021 Li HL, Yang M, Zhou N. The complete chloroplast genome and phylogenetic analysis of Craib (Leguminosae). Mitochondrial Dna. Part B, Resources. 6: 2182-2183. PMID 34345677 DOI: 10.1080/23802359.2021.1923410   
2021 Park J, Wang HH. Systematic dissection of σ sequence diversity and function in bacteria. Cell Reports. 36: 109590. PMID 34433066 DOI: 10.1016/j.celrep.2021.109590   
2021 Hsu PS, Yu SH, Tsai YT, Chang JY, Tsai LK, Ye CH, Song NY, Yau LC, Lin SP. More than causing (epi)genomic instability: emerging physiological implications of transposable element modulation. Journal of Biomedical Science. 28: 58. PMID 34364371 DOI: 10.1186/s12929-021-00754-2   
2021 Wang L, Liao B, Gong L, Xiao S, Huang Z. Haploid Genome Analysis Reveals a Tandem Cluster of Four Genes Involved in the High-Temperature Adaptation of . Microbiology Spectrum. e0028721. PMID 34406871 DOI: 10.1128/Spectrum.00287-21   
2021 Gao Y, Yang Q, Yan X, Wu X, Yang F, Li J, Wei J, Ni J, Ahmad M, Bai S, Teng Y. High-quality genome assembly of 'Cuiguan' pear (Pyrus pyrifolia) as a reference genome for identifying regulatory genes and epigenetic modifications responsible for bud dormancy. Horticulture Research. 8: 197. PMID 34465760 DOI: 10.1038/s41438-021-00632-w   
2021 Li J, Xu Y, Shan Y, Pei X, Yong S, Liu C, Yu J. Assembly of the complete mitochondrial genome of an endemic plant, Scutellaria tsinyunensis, revealed the existence of two conformations generated by a repeat-mediated recombination. Planta. 254: 36. PMID 34302538 DOI: 10.1007/s00425-021-03684-3   
2021 Yang K, Fan M, Sun Y, Liu Q, Gao H. The complete chloroplast genome of the subtropical species 'Huaheling'. Mitochondrial Dna. Part B, Resources. 6: 2385-2386. PMID 34345703 DOI: 10.1080/23802359.2021.1948362   
2021 He J, Zhao C, Guo Y, Zhang H, Zhao B, Chu Z. Completely mitochondrial genome of . Mitochondrial Dna. Part B, Resources. 6: 2708-2709. PMID 34435128 DOI: 10.1080/23802359.2021.1945966   
2021 Revikumar A, Kashyap V, Palollathil A, Aravind A, Raguraman R, Kumar KMK, Vijayakumar M, Prasad TSK, Raju R. Multiple G-quadruplex binding ligand induced transcriptomic map of cancer cell lines. Journal of Cell Communication and Signaling. PMID 34309794 DOI: 10.1007/s12079-021-00637-z   
2021 Naftaly AS, Pau S, White MA. Long-read RNA sequencing reveals widespread sex-specific alternative splicing in threespine stickleback fish. Genome Research. PMID 34131005 DOI: 10.1101/gr.274282.120   
2021 Naftaly AS, Pau S, White MA. Long-read RNA sequencing reveals widespread sex-specific alternative splicing in threespine stickleback fish. Genome Research. PMID 34131005 DOI: 10.1101/gr.274282.120   
2021 Yuan XL, Zha DX, Xue L, Wang XY, Xu G, Li WB, Xu HQ. Complete chloroplast genome sequence of and its phylogenetic position. Mitochondrial Dna. Part B, Resources. 6: 2480-2481. PMID 34377800 DOI: 10.1080/23802359.2021.1915199   
2021 Georgakopoulos-Soares I, Yizhar-Barnea O, Mouratidis I, Hemberg M, Ahituv N. Absent from DNA and protein: genomic characterization of nullomers and nullpeptides across functional categories and evolution. Genome Biology. 22: 245. PMID 34433494 DOI: 10.1186/s13059-021-02459-z   
2021 Fang Y, Jiang J, Du Q, Luo L, Li X, Xie X. Cytochrome P450 Superfamily: Evolutionary and Functional Divergence in Sorghum () Stress Resistance. Journal of Agricultural and Food Chemistry. PMID 34495670 DOI: 10.1021/acs.jafc.1c03701   
2021 Qiu Z, Zhu Y, Du Z, Bao P. The complete chloroplast genome sequence of the mangrove associate species . Mitochondrial Dna. Part B, Resources. 6: 2376-2378. PMID 34345700 DOI: 10.1080/23802359.2021.1925171