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Jamie K. Scott - Publications

Molecular Biology and Biochemistry Simon Fraser University, Burnaby, British Columbia, Canada 
Molecular Biology, Biochemistry, Immunology

60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Ohlin M, Scheepers C, Corcoran M, Lees WD, Busse CE, Bagnara D, Thörnqvist L, Bürckert JP, Jackson KJL, Ralph D, Schramm CA, Marthandan N, Breden F, Scott J, Matsen Iv FA, et al. Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming. Frontiers in Immunology. 10: 435. PMID 30936866 DOI: 10.3389/Fimmu.2019.00435  0.01
2018 Corrie BD, Marthandan N, Zimonja B, Jaglale J, Zhou Y, Barr E, Knoetze N, Breden FMW, Christley S, Scott JK, Cowell LG, Breden F. iReceptor: A platform for querying and analyzing antibody/B-cell and T-cell receptor repertoire data across federated repositories. Immunological Reviews. 284: 24-41. PMID 29944754 DOI: 10.1111/Imr.12666  0.01
2017 Rubelt F, Busse CE, Bukhari SAC, Bürckert JP, Mariotti-Ferrandiz E, Cowell LG, Watson CT, Marthandan N, Faison WJ, Hershberg U, Laserson U, Corrie BD, Davis MM, Peters B, Lefranc MP, Scott JK, et al. Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data. Nature Immunology. 18: 1274-1278. PMID 29144493 DOI: 10.1038/Ni.3873  0.01
2016 Rujas E, Caaveiro JM, Partida-Hanon A, Gulzar N, Morante K, Apellániz B, García-Porras M, Bruix M, Tsumoto K, Scott JK, Jiménez MÁ, Nieva JL. Structural basis for broad neutralization of HIV-1 through the molecular recognition of 10E8 helical epitope at the membrane interface. Scientific Reports. 6: 38177. PMID 27905530 DOI: 10.1038/Srep38177  0.01
2016 Toby IT, Levin MK, Salinas EA, Christley S, Bhattacharya S, Breden F, Buntzman A, Corrie B, Fonner J, Gupta NT, Hershberg U, Marthandan N, Rosenfeld A, Rounds W, Rubelt F, ... Scott JK, et al. VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements. Bmc Bioinformatics. 17: 333. PMID 27766961 DOI: 10.1186/S12859-016-1214-3  1
2016 Larrick JW, Alfenito MR, Scott JK, Parren PW, Burton DR, Bradbury AR, Lemere CA, Messer A, Huston JS, Carter PJ, Veldman T, Chester KA, Schurrman J, Adams GP, Reichert JM. Antibody Engineering & Therapeutics 2016: The Antibody Society's Annual Meeting December 11-15, 2016, San Diego, CA. Mabs. 0. PMID 27557809 DOI: 10.1080/19420862.2016.1227665  0.04
2016 Dix ST, Scott JK, Getman RB, Campbell CT. Using degrees of rate control to improve selective n-butane oxidation over model MOF-encapsulated catalysts: sterically-constrained Ag3Pd(111). Faraday Discussions. PMID 27271786 DOI: 10.1039/C5Fd00198F  0.01
2016 Rujas E, Gulzar N, Morante K, Tsumoto K, Scott JK, Nieva JL, Caaveiro JMM. Reply to "The broadly neutralizing, anti-HIV antibody 4E10: An open and shut case?" Journal of Virology. 90: 3276-3277. DOI: 10.1128/JVI.02970-15  1
2016 Polo-Garzon F, Scott JK, Bruce DA. Microkinetic model for the dry reforming of methane on Rh doped pyrochlore catalysts Journal of Catalysis. 340: 196-204. DOI: 10.1016/j.jcat.2016.05.019  0.01
2016 Scott JK, Raimondo DM, Marseglia GR, Braatz RD. Constrained zonotopes: A new tool for set-based estimation and fault detection Automatica. 69: 126-136. DOI: 10.1016/J.Automatica.2016.02.036  0.01
2015 Parren PW, Burton DR, Bradbury A, Huston JS, Carter PJ, Veldman T, Chester KA, Larrick JW, Alfenito MR, Scott JK, Weiner LM, Adams GP, Reichert JM. Antibody Engineering & Therapeutics 2015: The Antibody Society's annual meeting December 7-10, 2015, San Diego, CA. Mabs. 7: 981-8. PMID 26421752 DOI: 10.1080/19420862.2015.1089707  1
2015 Henry KA, Arbabi-Ghahroudi M, Scott JK. Beyond phage display: non-traditional applications of the filamentous bacteriophage as a vaccine carrier, therapeutic biologic, and bioconjugation scaffold. Frontiers in Microbiology. 6: 755. PMID 26300850 DOI: 10.3389/Fmicb.2015.00755  0.48
2015 Henry KA, Arbabi-Ghahroudi M, Scott JK. Beyond phage display: Non-traditional applications of the filamentous bacteriophage as a vaccine carrier, therapeutic biologic, and bioconjugation scaffold Frontiers in Microbiology. 6. DOI: 10.3389/fmicb.2015.00755  1
2015 Rujas E, Gulzar N, Morante K, Tsumoto K, Scott JK, Nieva JL, Caaveiro JMM. Structural and thermodynamic basis of epitope binding by neutralizing and nonneutralizing forms of the anti-HIV-1 antibody 4E10 Journal of Virology. 89: 11975-11989. DOI: 10.1128/JVI.01793-15  1
2014 Larrick JW, Parren P, Huston JS, Plückthun A, Bradbury A, Tomlinson IM, Chester KA, Burton DR, Adams GP, Weiner LM, Scott JK, Alfenito MR, Veldman T, Reichert JM. Antibody engineering and therapeutics conference. The annual meeting of the antibody society, Huntington Beach, CA, December 7-11, 2014. Mabs. 6: 1115-23. PMID 25517297 DOI: 10.4161/19420862.2014.971627  1
2014 Almagro JC, Gilliland GL, Breden F, Scott JK, Sok D, Pauthner M, Reichert JM, Helguera G, Andrabi R, Mabry R, Bléry M, Voss JE, Laurén J, Abuqayyas L, Barghorn S, et al. Antibody engineering and therapeutics, The Annual Meeting of the Antibody Society: December 8-12, 2013, Huntington Beach, CA. Mabs. 6: 577-618. PMID 24589717 DOI: 10.4161/Mabs.28421  1
2013 Watson CT, Steinberg KM, Huddleston J, Warren RL, Malig M, Schein J, Willsey AJ, Joy JB, Scott JK, Graves TA, Wilson RK, Holt RA, Eichler EE, Breden F. Complete haplotype sequence of the human immunoglobulin heavy-chain variable, diversity, and joining genes and characterization of allelic and copy-number variation. American Journal of Human Genetics. 92: 530-46. PMID 23541343 DOI: 10.1016/J.Ajhg.2013.03.004  1
2012 Marquardt J, Begent RH, Chester K, Huston JS, Bradbury A, Scott JK, Thorpe PE, Veldman T, Reichert JM, Weiner LM. IBC's 23rd Antibody Engineering and 10th Antibody Therapeutics Conferences and the Annual Meeting of The Antibody Society: December 2-6, 2012, San Diego, CA. Mabs. 4: 648-52. PMID 23007482 DOI: 10.4161/Mabs.22221  1
2012 Raymond-Bouchard I, Carroll CS, Nesbitt JR, Henry KA, Pinto LJ, Moinzadeh M, Scott JK, Moore MM. Structural requirements for the activity of the MirB ferrisiderophore transporter of Aspergillus fumigatus. Eukaryotic Cell. 11: 1333-44. PMID 22903978 DOI: 10.1128/Ec.00159-12  1
2012 Scott JK, Pantophlet R, Craig L. Complex binding sites made to order. Nature Biotechnology. 30: 154-5. PMID 22318033 DOI: 10.1038/Nbt.2118  1
2012 Montero M, Gulzar N, Klaric KA, Donald JE, Lepik C, Wu S, Tsai S, Julien JP, Hessell AJ, Wang S, Lu S, Burton DR, Pai EF, Degrado WF, Scott JK. Neutralizing epitopes in the membrane-proximal external region of HIV-1 gp41 are influenced by the transmembrane domain and the plasma membrane. Journal of Virology. 86: 2930-41. PMID 22238313 DOI: 10.1128/Jvi.06349-11  1
2012 Lee J, Gulzar N, Scott JK, Li PCH. A nanofluidic bioarray chip for fast and high-throughput detection of antibodies in biological fluids Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8548. DOI: 10.1117/12.945970  1
2011 Henry KA, Murira A, van Houten NE, Scott JK. Developing strategies to enhance and focus humoral immune responses using filamentous phage as a model antigen Bioengineered Bugs. 2: 275-283. PMID 22008640 DOI: 10.4161/Bbug.2.5.16559  1
2011 Zhu Z, Qin HR, Chen W, Zhao Q, Shen X, Schutte R, Wang Y, Ofek G, Streaker E, Prabakaran P, Fouda GG, Liao HX, Owens J, Louder M, Yang Y, ... ... Scott JK, et al. Cross-reactive HIV-1-neutralizing human monoclonal antibodies identified from a patient with 2F5-like antibodies. Journal of Virology. 85: 11401-8. PMID 21880764 DOI: 10.1128/Jvi.05312-11  1
2011 Singh H, Henry KA, Wu SS, Chruscinski A, Utz PJ, Scott JK. Reactivity profiles of broadly neutralizing anti-HIV-1 antibodies are distinct from those of pathogenic autoantibodies. Aids (London, England). 25: 1247-57. PMID 21508803 DOI: 10.1097/Qad.0B013E32834785Cf  0.48
2011 Breden F, Lepik C, Longo NS, Montero M, Lipsky PE, Scott JK. Comparison of antibody repertoires produced by HIV-1 infection, other chronic and acute infections, and systemic autoimmune disease. Plos One. 6: e16857. PMID 21479208 DOI: 10.1371/Journal.Pone.0016857  1
2011 Romanuik SF, Grist SM, Gray BL, Hohertz D, Kavanagh KL, Gulzar N, Scott JK, Nirwan R, Hui C, Brolo AG, Gordon R. Detecting antibodies secreted by trapped cells using extraordinary optical transmission Ieee Sensors Journal. 11: 2732-2739. DOI: 10.1109/Jsen.2011.2158643  1
2010 van Houten NE, Henry KA, Smith GP, Scott JK. Engineering filamentous phage carriers to improve focusing of antibody responses against peptides. Vaccine. 28: 2174-85. PMID 20056188 DOI: 10.1016/J.Vaccine.2009.12.059  1
2010 Irving MB, Craig L, Menendez A, Gangadhar BP, Montero M, van Houten NE, Scott JK. Exploring peptide mimics for the production of antibodies against discontinuous protein epitopes. Molecular Immunology. 47: 1137-48. PMID 20031219 DOI: 10.1016/J.Molimm.2009.10.015  0.48
2010 Romanuik SF, Grist SM, Haq M, Gray BL, Gulzar N, Scott JK. The microfluidic trapping of antibody-secreting cells Asme 2010 8th International Conference On Nanochannels, Microchannels, and Minichannels Collocated With 3rd Joint Us-European Fluids Engineering Summer Meeting, Icnmm2010. 1465-1474. DOI: 10.1115/Fedsm-Icnmm2010-30845  1
2008 Feldman AR, Shapova YA, Wu SS, Oliver DC, Heller M, McIntosh LP, Scott JK, Paetzel M. Phage display and crystallographic analysis reveals potential substrate/binding site interactions in the protein secretion chaperone CsaA from Agrobacterium tumefaciens. Journal of Molecular Biology. 379: 457-70. PMID 18462752 DOI: 10.1016/J.Jmb.2008.03.048  1
2008 Montero M, van Houten NE, Wang X, Scott JK. The membrane-proximal external region of the human immunodeficiency virus type 1 envelope: dominant site of antibody neutralization and target for vaccine design. Microbiology and Molecular Biology Reviews : Mmbr. 72: 54-84, table of cont. PMID 18322034 DOI: 10.1128/Mmbr.00020-07  0.48
2008 Menendez A, Calarese DA, Stanfield RL, Chow KC, Scanlan CN, Kunert R, Katinger H, Burton DR, Wilson IA, Scott JK. A peptide inhibitor of HIV-1 neutralizing antibody 2G12 is not a structural mimic of the natural carbohydrate epitope on gp120. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 22: 1380-92. PMID 18198210 DOI: 10.1096/Fj.07-8983Com  1
2008 Montero M, Van Houten NE, Wang X, Scott JK. The membrane-proximal external region of the human immunodeficiency virus type 1 envelope: Dominant site of antibody neutralization and target for vaccine design (Microbiology and Molecular Biology Reviews (2008) 72, 1, (54-84)) Microbiology and Molecular Biology Reviews. 72: 378. DOI: 10.1128/MMBR.00006-08  1
2007 Saphire EO, Montero M, Menendez A, van Houten NE, Irving MB, Pantophlet R, Zwick MB, Parren PW, Burton DR, Scott JK, Wilson IA. Structure of a high-affinity "mimotope" peptide bound to HIV-1-neutralizing antibody b12 explains its inability to elicit gp120 cross-reactive antibodies. Journal of Molecular Biology. 369: 696-709. PMID 17445828 DOI: 10.1016/J.Jmb.2007.01.060  1
2006 van Houten NE, Zwick MB, Menendez A, Scott JK. Filamentous phage as an immunogenic carrier to elicit focused antibody responses against a synthetic peptide. Vaccine. 24: 4188-200. PMID 16488517 DOI: 10.1016/J.Vaccine.2006.01.001  1
2005 Menendez A, Scott JK. The nature of target-unrelated peptides recovered in the screening of phage-displayed random peptide libraries with antibodies. Analytical Biochemistry. 336: 145-57. PMID 15620878 DOI: 10.1016/J.Ab.2004.09.048  1
2004 Menendez A, Chow KC, Pan OC, Scott JK. Human immunodeficiency virus type 1-neutralizing monoclonal antibody 2F5 is multispecific for sequences flanking the DKW core epitope. Journal of Molecular Biology. 338: 311-27. PMID 15066434 DOI: 10.1016/J.Jmb.2004.02.051  1
2003 Zwick MB, Parren PW, Saphire EO, Church S, Wang M, Scott JK, Dawson PE, Wilson IA, Burton DR. Molecular features of the broadly neutralizing immunoglobulin G1 b12 required for recognition of human immunodeficiency virus type 1 gp120. Journal of Virology. 77: 5863-76. PMID 12719580 DOI: 10.1128/Jvi.77.10.5863-5876.2003  1
2003 Visvanathan S, Scott JK, Hwang KK, Banares M, Grossman JM, Merrill JT, FitzGerald J, Chukwuocha RU, Tsao BP, Hahn BH, Chen PP. Identification and characterization of a peptide mimetic that may detect a species of disease-associated anticardiolipin antibodies in patients with the antiphospholipid syndrome. Arthritis and Rheumatism. 48: 737-45. PMID 12632428 DOI: 10.1002/Art.10836  1
2002 Smrcka AV, Scott JK. Discovery of ligands for beta gamma subunits from phage-displayed peptide libraries. Methods in Enzymology. 344: 557-76. PMID 11771410 DOI: 10.1016/S0076-6879(02)44740-4  1
2001 Irving MB, Pan O, Scott JK. Random-peptide libraries and antigen-fragment libraries for epitope mapping and the development of vaccines and diagnostics Current Opinion in Chemical Biology. 5: 314-324. PMID 11479124 DOI: 10.1016/S1367-5931(00)00208-8  1
2001 Zwick MB, Bonnycastle LL, Menendez A, Irving MB, Barbas CF, Parren PW, Burton DR, Scott JK. Identification and characterization of a peptide that specifically binds the human, broadly neutralizing anti-human immunodeficiency virus type 1 antibody b12. Journal of Virology. 75: 6692-9. PMID 11413337 DOI: 10.1128/Jvi.75.14.6692-6699.2001  1
2001 Scott JK, Huang SF, Gangadhar BP, Samoriski GM, Clapp P, Gross RA, Taussig R, Smrcka AV. Evidence that a protein-protein interaction 'hot spot' on heterotrimeric G protein betagamma subunits is used for recognition of a subclass of effectors. The Embo Journal. 20: 767-76. PMID 11179221 DOI: 10.1093/Emboj/20.4.767  1
2000 Zwick MB, Shen J, Scott JK. Homodimeric peptides displayed by the major coat protein of filamentous phage Journal of Molecular Biology. 300: 307-320. PMID 10873467 DOI: 10.1006/Jmbi.2000.3850  1
2000 Yu MWN, Scott JK, Fournier A, Talbot PJ. Characterization of murine coronavirus neutralization epitopes with phage-displayed peptides Virology. 271: 182-196. PMID 10814583 DOI: 10.1006/Viro.2000.0310  1
1999 Blancafort P, Steinberg SV, Paquin B, Klinck R, Scott JK, Cedergren R. The recognition of a noncanonical RNA base pair by a zinc finger protein. Chemistry & Biology. 6: 585-97. PMID 10421761 DOI: 10.1016/S1074-5521(99)80091-X  1
1998 Zwick MB, Bonnycastle LLC, Noren KA, Venturini S, Leong E, Barbas CF, Noren CJ, Scott JK. The maltose-binding protein as a scaffold for monovalent display of peptides derived from phage libraries Analytical Biochemistry. 264: 87-97. PMID 9784192 DOI: 10.1006/Abio.1998.2793  1
1998 Zwick MB, Shen J, Scott JK. Phage-displayed peptide libraries Current Opinion in Biotechnology. 9: 427-436. PMID 9720267 DOI: 10.1016/S0958-1669(98)80017-7  1
1998 Craig L, Sanschagrin PC, Rozek A, Lackie S, Kuhn LA, Scott JK. The role of structure in antibody cross-reactivity between peptides and folded proteins. Journal of Molecular Biology. 281: 183-201. PMID 9680484 DOI: 10.1006/Jmbi.1998.1907  1
1997 Bonnycastle LL, Brown KL, Tang J, Scott JK. Assaying phage-borne peptides by phage capture on fibrinogen or streptavidin. Biological Chemistry. 378: 509-15. PMID 9224931 DOI: 10.1515/Bchm.1997.378.6.509  1
1997 Harris SL, Craig L, Mehroke JS, Rashed M, Zwick MB, Kenar K, Toone EJ, Greenspan N, Auzanneau FI, Marino-Albernas JR, Pinto BM, Scott JK. Exploring the basis of peptide-carbohydrate crossreactivity: evidence for discrimination by peptides between closely related anti-carbohydrate antibodies. Proceedings of the National Academy of Sciences of the United States of America. 94: 2454-9. PMID 9122216 DOI: 10.1073/Pnas.94.6.2454  1
1996 Bonnycastle LLC, Mehroke JS, Rashed M, Gong X, Scott JK. Probing the basis of antibody reactivity with a panel of constrained peptide libraries displayed by filamentous phage Journal of Molecular Biology. 258: 747-762. PMID 8637007 DOI: 10.1006/jmbi.1996.0284  1
1994 Scott JK, Craig L. Random peptide libraries Current Opinion in Biotechnology. 5: 40-48. PMID 7764642 DOI: 10.1016/S0958-1669(05)80068-0  1
1993 Smith GP, Scott JK. Libraries of peptides and proteins displayed on filamentous phage Methods in Enzymology. 217: 228-257. PMID 7682645 DOI: 10.1016/0076-6879(93)17065-D  1
1993 Gong X, Schopp C, Scott JK. The performance of epitope libraries: Crystallographic evidence for a direct correspondence between the residues selected and the critical residues for binding Protein Engineering, Design and Selection. 6: 106. DOI: 10.1093/protein/6.Supplement.106-a  1
1992 Scott JK. Discovering peptide ligands using epitope libraries Trends in Biochemical Sciences. 17: 241-245. PMID 1380191 DOI: 10.1016/0968-0004(92)90401-T  1
1992 Scott JK, Loganathan D, Easley RB, Gong X, Goldstein IJ. A family of concanavalin A-binding peptides from a hexapeptide epitope library. Proceedings of the National Academy of Sciences of the United States of America. 89: 5398-402. PMID 1376919  1
1991 Olivera BM, Rivier J, Scott JK, Hillyard DR, Cruz LJ. Conotoxins. The Journal of Biological Chemistry. 266: 22067-70. PMID 1939227  1
1990 Scott JK, Smith GP. Searching for peptide ligands with an epitope library Science. 249: 386-390. PMID 1696028 DOI: 10.1126/Science.1696028  1
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