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Jamie K. Scott - Related publications

Molecular Biology and Biochemistry Simon Fraser University, Burnaby, British Columbia, Canada 
Molecular Biology, Biochemistry, Immunology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Fritz ZR, Schloss RS, Yarmush ML, Williams LJ. HSymM-Guided Engineering of the Immunodominant p53 Transactivation Domain Putative Peptide Antigen for Improved Binding to its Anti-p53 Monoclonal Antibody. Bioorganic & Medicinal Chemistry Letters. 128341. PMID 34454062 DOI: 10.1016/j.bmcl.2021.128341   
2021 Aranha MP, Penfound TA, Salehi S, Botteaux A, Smeesters P, Dale JB, Smith JC. Design of Broadly Cross-Reactive M Protein-Based Group A Streptococcal Vaccines. Journal of Immunology (Baltimore, Md. : 1950). PMID 34341168 DOI: 10.4049/jimmunol.2100286   
2021 Pao PJ, Hsu MF, Chiang MH, Chen CT, Lee CC, Wang AH. Structural basis of an epitope tagging system derived from Haloarcula marismortui bacteriorhodopsin I D94N and its monoclonal antibody GD-26. The Febs Journal. PMID 34499806 DOI: 10.1111/febs.16184   
2021 Brandt AAML, Rodrigues-da-Silva RN, Lima-Junior JC, Alves CR, de Souza-Silva F. Combining Well-Tempered Metadynamics Simulation and SPR Assays to Characterize the Binding Mechanism of the Universal T-Lymphocyte Tetanus Toxin Epitope TT830-843. Biomed Research International. 2021: 5568980. PMID 34285916 DOI: 10.1155/2021/5568980   
2021 Gómez-González J, Bouzada D, Pérez-Márquez LA, Sciortino G, Maréchal JD, Vázquez López M, Vázquez ME. Stereoselective Self-Assembly of DNA Binding Helicates Directed by the Viral β-Annulus Trimeric Peptide Motif. Bioconjugate Chemistry. PMID 34320309 DOI: 10.1021/acs.bioconjchem.1c00312   
2021 Lopez-Silva TL, Schneider JP. From structure to application: Progress and opportunities in peptide materials development. Current Opinion in Chemical Biology. 64: 131-144. PMID 34329941 DOI: 10.1016/j.cbpa.2021.06.006   
2021 Ascencio-Ibáñez JT, Bobay BG. Conserved Structural Motif Identified in Peptides That Bind to Geminivirus Replication Protein Rep. Biochemistry. PMID 34464102 DOI: 10.1021/acs.biochem.1c00408   
2021 Sadremomtaz A, Al-Dahmani ZM, Ruiz-Moreno AJ, Monti A, Wang C, Azad T, Bell JC, Doti N, Velasco-Velázquez MA, de Jong D, de Jonge J, Smit J, Dömling A, van Goor H, Groves MR. Synthetic Peptides That Antagonize the Angiotensin-Converting Enzyme-2 (ACE-2) Interaction with SARS-CoV-2 Receptor Binding Spike Protein. Journal of Medicinal Chemistry. PMID 34328726 DOI: 10.1021/acs.jmedchem.1c00477   
2021 Han JT, Zhu Y, Pan DB, Xue HX, Wang S, Peng Y, Liu H, He YX, Yao X. Discovery of pentapeptide-inhibitor hits targeting FKBP51 by combining computational modeling and X-ray crystallography. Computational and Structural Biotechnology Journal. 19: 4079-4091. PMID 34401048 DOI: 10.1016/j.csbj.2021.07.015   
2021 Sanches K, Wai DCC, Norton RS. Conformational dynamics in peptide toxins: Implications for receptor interactions and molecular design. Toxicon : Official Journal of the International Society On Toxinology. 201: 127-140. PMID 34454969 DOI: 10.1016/j.toxicon.2021.08.020   
2021 Zhang D, Wu H, Zhao J. Computational design and experimental substantiation of conformationally constrained peptides from the complex interfaces of transcriptional enhanced associate domains with their cofactors in gastric cancer. Computational Biology and Chemistry. 94: 107569. PMID 34500324 DOI: 10.1016/j.compbiolchem.2021.107569   
2021 Unarta IC, Xu J, Shang Y, Cheung CHP, Zhu R, Chen X, Cao S, Cheung PP, Bierer D, Zhang M, Huang X, Li X. Entropy of stapled peptide inhibitors in free state is the major contributor to the improvement of binding affinity with the GK domain. Rsc Chemical Biology. 2: 1274-1284. PMID 34458841 DOI: 10.1039/d1cb00087j   
2021 McCaul N, Quandte M, Bontjer I, van Zadelhoff G, Land A, Crooks ET, Binley JM, Sanders RW, Braakman I. Intramolecular quality control: HIV-1 envelope gp160 signal-peptide cleavage as a functional folding checkpoint. Cell Reports. 36: 109646. PMID 34469718 DOI: 10.1016/j.celrep.2021.109646   
2021 Rathman BM, Rowe JL, Del Valle JR. Synthesis and conformation of backbone N-aminated peptides. Methods in Enzymology. 656: 271-294. PMID 34325790 DOI: 10.1016/bs.mie.2021.04.013   
2021 Dhusia K, Su Z, Wu Y. A structural-based machine learning method to classify binding affinities between TCR and peptide-MHC complexes. Molecular Immunology. 139: 76-86. PMID 34455212 DOI: 10.1016/j.molimm.2021.07.020   
2021 Liu Y, Shao X, Wang T, Wang X, Li N, Zhao Y, Xia W, Sun L. [Structure prediction and biological activity analysis of dybowskin-1ST antimicrobial peptide in Rana dybowskii]. Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 37: 2890-2902. PMID 34472306 DOI: 10.13345/j.cjb.200564   
2021 Munhoz VHO, Ferreira CS, Nunes LO, Santos TL, Aisenbrey C, Adão R, de Carvalho Alcântara AF, de Magalhães MTQ, Piló-Veloso D, Resende JM, Bechinger B, Verly RM. Epimers l- and d-Phenylseptin: How the relative stereochemistry affects the peptide-membrane interactions. Biochimica Et Biophysica Acta. Biomembranes. 1863: 183708. PMID 34310911 DOI: 10.1016/j.bbamem.2021.183708   
2021 Parker JL, Deme JC, Wu Z, Kuteyi G, Huo J, Owens RJ, Biggin PC, Lea SM, Newstead S. Cryo-EM structure of PepT2 reveals structural basis for proton-coupled peptide and prodrug transport in mammals. Science Advances. 7. PMID 34433568 DOI: 10.1126/sciadv.abh3355   
2021 Butrón D, Zamora-Carreras H, Devesa I, Treviño MA, Abian O, Velázquez-Campoy A, Bonache MÁ, Lagartera L, Martín-Martínez M, González-Rodríguez S, Baamonde A, Fernández-Carvajal A, Ferrer-Montiel A, Jiménez MÁ, González-Muñiz R. DD04107-Derived neuronal exocytosis inhibitor peptides: Evidences for synaptotagmin-1 as a putative target. Bioorganic Chemistry. 115: 105231. PMID 34388485 DOI: 10.1016/j.bioorg.2021.105231   
2021 Honisch C, Ragazzi E, Hussain R, Brazier J, Siligardi G, Ruzza P. Interaction of a Short Peptide with G-Quadruplex-Forming Sequences: An SRCD and CD Study. Pharmaceutics. 13. PMID 34452065 DOI: 10.3390/pharmaceutics13081104   
2021 Si W, Yang H, Wu G, Zhang Y, Sha J. Velocity control of protein translocation through a nanopore by tuning the fraction of benzenoid residues. Nanoscale. PMID 34498657 DOI: 10.1039/d1nr04492c   
2021 Qin X, Chen H, Tu L, Ma Y, Liu N, Zhang H, Li D, Riedl B, Bierer D, Yin F, Li Z. Potent Inhibition of HIF1α and p300 Interaction by a Constrained Peptide Derived from CITED2. Journal of Medicinal Chemistry. PMID 34472840 DOI: 10.1021/acs.jmedchem.1c01043   
2021 Sharma G, Braga CB, Chen KE, Jia X, Ramanujam V, Collins BM, Rittner R, Mobli M. Structural basis for the binding of the cancer targeting scorpion toxin, ClTx, to the vascular endothelia growth factor receptor neuropilin-1. Current Research in Structural Biology. 3: 179-186. PMID 34401749 DOI: 10.1016/j.crstbi.2021.07.003   
2021 Zhou M, Wen H, Lei H, Zhang T. Molecular dynamics study of conformation transition from helix to sheet of Aβ42 peptide. Journal of Molecular Graphics & Modelling. 109: 108027. PMID 34534891 DOI: 10.1016/j.jmgm.2021.108027   
2021 Macpherson A, Birtley JR, Broadbridge RJ, Brady K, Schulze MED, Tang Y, Joyce C, Saunders K, Bogle G, Horton J, Kelm S, Taylor RD, Franklin RJ, Selby MD, Laabei M, et al. The Chemical Synthesis of Knob Domain Antibody Fragments. Acs Chemical Biology. PMID 34406751 DOI: 10.1021/acschembio.1c00472   
2021 Hymel D, Tsuji K, Grant RA, Chingle RM, Kunciw DL, Yaffe MB, Burke TR. Design and synthesis of a new orthogonally protected glutamic acid analog and its use in the preparation of high affinity polo-like kinase 1 polo-box domain - binding peptide macrocycles. Organic & Biomolecular Chemistry. PMID 34346472 DOI: 10.1039/d1ob01120k   
2021 Saranya V, Shankar R, Gatasheh MK, Zehra S. Impact of Au metal clusters on the structural and inhibitory mechanism of Aβ peptide: A theoretical approach. Environmental Research. 204: 111920. PMID 34464618 DOI: 10.1016/j.envres.2021.111920   
2021 Wang P, Yue C, Liu K, Lu D, Liu S, Yao S, Li X, Su X, Ren K, Chai Y, Qi J, Zhao Y, Lou Y, Sun Z, Gao GF, et al. Peptide Presentations of Marsupial MHC Class I Visualize Immune Features of Lower Mammals Paralleled with Bats. Journal of Immunology (Baltimore, Md. : 1950). PMID 34535575 DOI: 10.4049/jimmunol.2100350   
2021 González-Castro R, Gómez-Lim MA, Plisson F. Cysteine-Rich Peptides: Hyperstable Scaffolds for Protein Engineering. Chembiochem : a European Journal of Chemical Biology. 22: 961-973. PMID 33095969 DOI: 10.1002/cbic.202000634   
2021 Cao Y, Choi YK, Frank M, Woo H, Park SJ, Yeom MS, Seok C, Im W. Dynamic Interactions of Fully Glycosylated SARS-CoV-2 Spike Protein with Various Antibodies. Journal of Chemical Theory and Computation. PMID 34529436 DOI: 10.1021/acs.jctc.1c00552   
2021 Yoo SH, Li B, Dolain C, Pasco M, Guichard G. Urea based foldamers. Methods in Enzymology. 656: 59-92. PMID 34325800 DOI: 10.1016/bs.mie.2021.04.019   
2021 Banerjee R, Sheet T, Banerjee S, Biondi B, Formaggio F, Toniolo C, Peggion C. C-Methyl-l-valine: A Preferential Choice over α-Aminoisobutyric Acid for Designing Right-Handed α-Helical Scaffolds. Biochemistry. PMID 34463474 DOI: 10.1021/acs.biochem.1c00340   
2021 Faragó Z, Mirzahosseini A, Horváth D, Pálla T, Horváth P, Perczel A, Noszál B. Solution Structure and Acid-Base Properties of Reduced α-Conotoxin MI. Chemistry & Biodiversity. e2100464. PMID 34467647 DOI: 10.1002/cbdv.202100464   
2021 Yin R, Guest JD, Taherzadeh G, Gowthaman R, Mittra I, Quackenbush J, Pierce BG. Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants. Plos Computational Biology. 17: e1009380. PMID 34491988 DOI: 10.1371/journal.pcbi.1009380   
2021 Sepehri A, Nepal B, Lazaridis T. Distinct Modes of Action of IAPP Oligomers on Membranes. Journal of Chemical Information and Modeling. PMID 34499498 DOI: 10.1021/acs.jcim.1c00767   
2021 Pandey B, Dev A, Chakravorty D, Bhandare VV, Polley S, Roy S, Basu G. Insights on the disruption of the complex between human positive coactivator 4 and p53 by small molecules. Biochemical and Biophysical Research Communications. 578: 15-20. PMID 34534740 DOI: 10.1016/j.bbrc.2021.09.020   
2021 Bansal R, Mohagaonkar S, Sen A, Khanam U, Rathi B. In-silico study of peptide-protein interaction of antimicrobial peptides potentially targeting SARS and SARS-CoV-2 nucleocapsid protein. In Silico Pharmacology. 9: 46. PMID 34336545 DOI: 10.1007/s40203-021-00103-z   
2021 Abraham ET, Oecal S, Mörgelin M, Schmid PWN, Buchner J, Baumann U, Gebauer JM. Collagen's primary structure determines collagen:HSP47 complex stoichiometry. The Journal of Biological Chemistry. 101169. PMID 34487762 DOI: 10.1016/j.jbc.2021.101169   
2021 Bell DR, Chen SH. Toward Guided Mutagenesis: Gaussian Process Regression Predicts MHC Class II Antigen Mutant Binding. Journal of Chemical Information and Modeling. PMID 34375111 DOI: 10.1021/acs.jcim.1c00458   
2021 Kusunoki H, Tanaka T, Ohshima C, Sakamoto T, Wakamatsu K, Hamaguchi I. The N93D mutation of the human T-cell leukemia virus type -1 envelope glycoprotein found in symptomatic patients enhances neuropilin-1 b1 domain binding. Biochimica Et Biophysica Acta. Proteins and Proteomics. 140708. PMID 34343702 DOI: 10.1016/j.bbapap.2021.140708   
2021 Feng R, Ni R, Chau Y. Altered Peptide Self-Assembly and Co-Assembly with DNA by Modification of Aromatic Residues. Chemmedchem. PMID 34528415 DOI: 10.1002/cmdc.202100440   
2021 Pace JR, Lampkin BJ, Abakah C, Moyer A, Miao J, Deprey K, Cerulli RA, Lin YS, Baleja JD, Baker D, Kritzer JA. Stapled β-Hairpins Featuring 4-Mercaptoproline. Journal of the American Chemical Society. PMID 34516087 DOI: 10.1021/jacs.1c04378   
2021 Gu J, Isozumi N, Yuan S, Jin L, Gao B, Ohki S, Zhu S. Evolution-Based Protein Engineering for Antifungal Peptide Improvement. Molecular Biology and Evolution. PMID 34320203 DOI: 10.1093/molbev/msab224   
2021 Vardar G, Salazar-Lázaro A, Brockmann MM, Weber-Boyvat M, Zobel S, Kumbol VW, Trimbuch T, Rosenmund C. Reexamination of N-terminal domains of Syntaxin-1 in vesicle fusion from central murine synapses. Elife. 10. PMID 34427183 DOI: 10.7554/eLife.69498   
2021 Akiba H, Tamura H, Caaveiro JMM, Tsumoto K. Epitope-dependent thermodynamic signature of single-domain antibodies against hen egg lysozyme. Journal of Biochemistry. PMID 34519785 DOI: 10.1093/jb/mvab082   
2021 Phillips AM, Lawrence KR, Moulana A, Dupic T, Chang J, Johnson MS, Cvijovic I, Mora T, Walczak AM, Desai MM. Binding affinity landscapes constrain the evolution of broadly neutralizing anti-influenza antibodies. Elife. 10. PMID 34491198 DOI: 10.7554/eLife.71393   
2021 Maben Z, Arya R, Georgiadis D, Stratikos E, Stern LJ. Conformational dynamics linked to domain closure and substrate binding explain the ERAP1 allosteric regulation mechanism. Nature Communications. 12: 5302. PMID 34489420 DOI: 10.1038/s41467-021-25564-w   
2021 Peccati F, Sodupe M. Atomistic insights into the structure of heptapeptide nanofibers. The Journal of Chemical Physics. 155: 055101. PMID 34364337 DOI: 10.1063/5.0048988   
2021 Tanaka M, Kato T, Oda M. Conformational changes of α-helical peptides with different hydrophobic residues induced by metal-ion binding. Biophysical Chemistry. 277: 106661. PMID 34388679 DOI: 10.1016/j.bpc.2021.106661   
2021 Wang W, Liu Q, Liu Q, Hendrickson WA. Conformational equilibria in allosteric control of Hsp70 chaperones. Molecular Cell. PMID 34453889 DOI: 10.1016/j.molcel.2021.07.039