| Year |
Citation |
Score |
| 2022 |
Doyle SR, Laing R, Bartley D, Morrison A, Holroyd N, Maitland K, Antonopoulos A, Chaudhry U, Flis I, Howell S, McIntyre J, Gilleard JS, Tait A, Mable B, Kaplan R, ... ... Cotton JA, et al. Genomic landscape of drug response reveals mediators of anthelmintic resistance. Cell Reports. 41: 111522. PMID 36261007 DOI: 10.1016/j.celrep.2022.111522 |
0.482 |
|
| 2022 |
Vianney TJ, Berger DJ, Doyle SR, Sankaranarayanan G, Serubanja J, Nakawungu PK, Besigye F, Sanya RE, Holroyd N, Allan F, Webb EL, Elliott AM, Berriman M, Cotton JA. Genome-wide analysis of Schistosoma mansoni reveals limited population structure and possible praziquantel drug selection pressure within Ugandan hot-spot communities. Plos Neglected Tropical Diseases. 16: e0010188. PMID 35981002 DOI: 10.1371/journal.pntd.0010188 |
0.517 |
|
| 2022 |
Berger DJ, Léger E, Sankaranarayanan G, Sène M, Diouf ND, Rabone M, Emery A, Allan F, Cotton JA, Berriman M, Webster JP. Genomic evidence of contemporary hybridization between Schistosoma species. Plos Pathogens. 18: e1010706. PMID 35939508 DOI: 10.1371/journal.ppat.1010706 |
0.532 |
|
| 2021 |
Baptista RP, Li Y, Sateriale A, Brooks KL, Tracey A, Sanders MJ, Ansell BRE, Jex AR, Cooper GW, Smith ED, Xiao R, Dumaine JE, Georgeson P, Pope B, Berriman M, ... ... Cotton JA, et al. Long-read assembly and comparative evidence-based reanalysis of genome sequences reveals expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions. Genome Research. PMID 34764149 DOI: 10.1101/gr.275325.121 |
0.534 |
|
| 2021 |
Berger DJ, Crellen T, Lamberton PHL, Allan F, Tracey A, Noonan JD, Kabatereine NB, Tukahebwa EM, Adriko M, Holroyd N, Webster JP, Berriman M, Cotton JA. Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration. Nature Communications. 12: 4776. PMID 34362894 DOI: 10.1038/s41467-021-24958-0 |
0.551 |
|
| 2020 |
Durrant C, Thiele EA, Holroyd N, Doyle SR, Sallé G, Tracey A, Sankaranarayanan G, Lotkowska ME, Bennett HM, Huckvale T, Abdellah Z, Tchindebet O, Wossen M, Logora MSY, Coulibaly CO, ... ... Cotton JA, et al. Population genomic evidence that human and animal infections in Africa come from the same populations of Dracunculus medinensis. Plos Neglected Tropical Diseases. 14: e0008623. PMID 33253172 DOI: 10.1371/journal.pntd.0008623 |
0.469 |
|
| 2020 |
Doyle SR, Tracey A, Laing R, Holroyd N, Bartley D, Bazant W, Beasley H, Beech R, Britton C, Brooks K, Chaudhry U, Maitland K, Martinelli A, Noonan JD, Paulini M, ... ... Cotton JA, et al. Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm. Communications Biology. 3: 656. PMID 33168940 DOI: 10.1038/s42003-020-01377-3 |
0.547 |
|
| 2020 |
Van den Broeck F, Savill NJ, Imamura H, Sanders M, Maes I, Cooper S, Mateus D, Jara M, Adaui V, Arevalo J, Llanos-Cuentas A, Garcia L, Cupolillo E, Miles M, Berriman M, ... ... Cotton JA, et al. Ecological divergence and hybridization of Neotropical parasites. Proceedings of the National Academy of Sciences of the United States of America. PMID 32958676 DOI: 10.1073/Pnas.1920136117 |
0.608 |
|
| 2020 |
Imamura H, Monsieurs P, Jara M, Sanders M, Maes I, Vanaerschot M, Berriman M, Cotton JA, Dujardin JC, Domagalska MA. Evaluation of whole genome amplification and bioinformatic methods for the characterization of Leishmania genomes at a single cell level. Scientific Reports. 10: 15043. PMID 32929126 DOI: 10.1038/S41598-020-71882-2 |
0.548 |
|
| 2020 |
Cotton JA, Franssen SU. A Way Straight-Forward for Leishmania Genetics. Trends in Parasitology. 36: 719-721. PMID 32741600 DOI: 10.1016/J.Pt.2020.07.005 |
0.312 |
|
| 2020 |
Tracey A, Foster JM, Paulini M, Grote A, Mattick J, Tsai YC, Chung M, Cotton JA, Clark TA, Geber A, Holroyd N, Korlach J, Libro S, Lustigman S, Michalski ML, et al. Nearly Complete Genome Sequence of Brugia malayi Strain FR3. Microbiology Resource Announcements. 9. PMID 32527783 DOI: 10.1128/MRA.00154-20 |
0.494 |
|
| 2020 |
Foster JM, Grote A, Mattick J, Tracey A, Tsai YC, Chung M, Cotton JA, Clark TA, Geber A, Holroyd N, Korlach J, Li Y, Libro S, Lustigman S, Michalski ML, et al. Sex chromosome evolution in parasitic nematodes of humans. Nature Communications. 11: 1964. PMID 32327641 DOI: 10.1038/S41467-020-15654-6 |
0.53 |
|
| 2020 |
Cotton JA, Durrant C, Franssen SU, Gelanew T, Hailu A, Mateus D, Sanders MJ, Berriman M, Volf P, Miles MA, Yeo M. Genomic analysis of natural intra-specific hybrids among Ethiopian isolates of Leishmania donovani. Plos Neglected Tropical Diseases. 14: e0007143. PMID 32310945 DOI: 10.1371/Journal.Pntd.0007143 |
0.586 |
|
| 2020 |
Franssen SU, Durrant C, Stark O, Moser B, Downing T, Imamura H, Dujardin JC, Sanders MJ, Mauricio I, Miles MA, Schnur LF, Jaffe CL, Nasereddin A, Schallig H, Yeo M, ... ... Cotton JA, et al. Global genome diversity of the complex. Elife. 9. PMID 32209228 DOI: 10.7554/Elife.51243 |
0.586 |
|
| 2020 |
Franssen SU, Durrant C, Stark O, Moser B, Downing T, Imamura H, Dujardin J, Sanders MJ, Mauricio I, Miles MA, Schnur LF, Jaffe CL, Nasereddin A, Schallig H, Yeo M, ... ... Cotton JA, et al. Author response: Global genome diversity of the Leishmania donovani complex Elife. DOI: 10.7554/Elife.51243.Sa2 |
0.543 |
|
| 2019 |
Domagalska MA, Imamura H, Sanders M, Van den Broeck F, Bhattarai NR, Vanaerschot M, Maes I, D'Haenens E, Rai K, Rijal S, Berriman M, Cotton JA, Dujardin JC. Genomes of Leishmania parasites directly sequenced from patients with visceral leishmaniasis in the Indian subcontinent. Plos Neglected Tropical Diseases. 13: e0007900. PMID 31830038 DOI: 10.1371/Journal.Pntd.0007900 |
0.567 |
|
| 2019 |
Sloan MA, Brooks K, Otto TD, Sanders MJ, Cotton JA, Ligoxygakis P. Transcriptional and genomic parallels between the monoxenous parasite Herpetomonas muscarum and Leishmania. Plos Genetics. 15: e1008452. PMID 31710597 DOI: 10.1371/Journal.Pgen.1008452 |
0.34 |
|
| 2019 |
Shaw CD, Imamura H, Downing T, Blackburn G, Westrop GD, Cotton JA, Berriman M, Sanders M, Rijal S, Coombs GH, Dujardin JC, Carter KC. Genomic and metabolomic polymorphism among experimentally selected paromomycin-resistant strains. Antimicrobial Agents and Chemotherapy. PMID 31658971 DOI: 10.1128/Aac.00904-19 |
0.489 |
|
| 2019 |
Sallé G, Doyle SR, Cortet J, Cabaret J, Berriman M, Holroyd N, Cotton JA. The global diversity of Haemonchus contortus is shaped by human intervention and climate. Nature Communications. 10: 4811. PMID 31641125 DOI: 10.1038/S41467-019-12695-4 |
0.604 |
|
| 2019 |
Doyle SR, Sankaranarayanan G, Allan F, Berger D, Jimenez Castro PD, Collins JB, Crellen T, Duque-Correa MA, Ellis P, Jaleta TG, Laing R, Maitland K, McCarthy C, Moundai T, Softley B, ... ... Cotton JA, et al. Evaluation of DNA Extraction Methods on Individual Helminth Egg and Larval Stages for Whole-Genome Sequencing. Frontiers in Genetics. 10: 826. PMID 31616465 DOI: 10.3389/Fgene.2019.00826 |
0.577 |
|
| 2019 |
Rezansoff AM, Laing R, Martinelli A, Stasiuk S, Redman E, Bartley D, Holroyd N, Devaney E, Sargison ND, Doyle S, Cotton JA, Gilleard JS. The confounding effects of high genetic diversity on the determination and interpretation of differential gene expression analysis in the parasitic nematode Haemonchus contortus. International Journal For Parasitology. PMID 31525371 DOI: 10.1016/J.Ijpara.2019.05.012 |
0.324 |
|
| 2019 |
Inbar E, Shaik J, Iantorno SA, Romano A, Nzelu CO, Owens K, Sanders MJ, Dobson D, Cotton JA, Grigg ME, Beverley SM, Sacks D. Whole genome sequencing of experimental hybrids supports meiosis-like sexual recombination in Leishmania. Plos Genetics. 15: e1008042. PMID 31091230 DOI: 10.1371/Journal.Pgen.1008042 |
0.356 |
|
| 2019 |
Doyle SR, Illingworth CJR, Laing R, Bartley DJ, Redman E, Martinelli A, Holroyd N, Morrison AA, Rezansoff A, Tracey A, Devaney E, Berriman M, Sargison N, Cotton JA, Gilleard JS. Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus. Bmc Genomics. 20: 218. PMID 30876405 DOI: 10.1186/S12864-019-5592-6 |
0.563 |
|
| 2019 |
Doyle SR, Cotton JA. Genome-wide Approaches to Investigate Anthelmintic Resistance. Trends in Parasitology. PMID 30733094 DOI: 10.1016/J.Pt.2019.01.004 |
0.385 |
|
| 2019 |
Coghlan A, Tyagi R, Cotton JA, Holroyd N, Rosa BA, Tsai IJ, Laetsch DR, Beech RN, Day TA, Hallsworth-Pepin K, Ke H, Kuo T, Lee TJ, Martin J, Maizels RM, et al. Comparative genomics of the major parasitic worms Nature Genetics. 51: 163-174. PMID 30397333 DOI: 10.1038/S41588-018-0262-1 |
0.577 |
|
| 2018 |
Thiele EA, Eberhard ML, Cotton JA, Durrant C, Berg J, Hamm K, Ruiz-Tiben E. Population genetic analysis of Chadian Guinea worms reveals that human and non-human hosts share common parasite populations. Plos Neglected Tropical Diseases. 12: e0006747. PMID 30286084 DOI: 10.1371/Journal.Pntd.0006747 |
0.357 |
|
| 2018 |
Cotton JA, Berriman M, Dalén L, Barnes I. Eradication genomics-lessons for parasite control. Science (New York, N.Y.). 361: 130-131. PMID 30002241 DOI: 10.1126/Science.Aar6609 |
0.548 |
|
| 2018 |
Coughlan S, Taylor AS, Feane E, Sanders M, Schonian G, Cotton JA, Downing T. and reference genomes highlight genome structure and gene evolution in the subgenus. Royal Society Open Science. 5: 172212. PMID 29765675 DOI: 10.1098/Rsos.172212 |
0.419 |
|
| 2018 |
Cuypers B, Berg M, Imamura H, Dumetz F, De Muylder G, Domagalska MA, Rijal S, Bhattarai NR, Maes I, Sanders M, Cotton JA, Meysman P, Laukens K, Dujardin JC. Integrated genomic and metabolomic profiling of ISC1, an emerging Leishmania donovani population in the Indian subcontinent. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 29679745 DOI: 10.1016/J.Meegid.2018.04.021 |
0.388 |
|
| 2018 |
Sallé G, Laing R, Cotton JA, Maitland K, Martinelli A, Holroyd N, Tracey A, Berriman M, Smith WD, Newlands GFJ, Hanks E, Devaney E, Britton C. Transcriptomic profiling of nematode parasites surviving vaccine exposure. International Journal For Parasitology. PMID 29534987 DOI: 10.1016/J.Ijpara.2018.01.004 |
0.499 |
|
| 2018 |
Gilchrist CA, Cotton JA, Burkey C, Arju T, Gilmartin A, Lin Y, Ahmed E, Steiner K, Alam M, Ahmed S, Robinson G, Zaman SU, Kabir M, Sanders M, Chalmers RM, et al. Genetic diversity of Cryptosporidium hominis in a Bangladeshi community as revealed by whole genome sequencing. The Journal of Infectious Diseases. PMID 29514308 DOI: 10.1093/Infdis/Jiy121 |
0.577 |
|
| 2018 |
Böhme U, Otto TD, Cotton J, Steinbiss S, Sanders M, Oyola SO, Nicot A, Gandon S, Patra KP, Herd C, Bushell E, Modrzynska KK, Billker O, Vinetz JM, Rivero A, et al. Complete avian malaria parasite genomes reveal features associated with lineage specific evolution in birds and mammals. Genome Research. PMID 29500236 DOI: 10.1101/Gr.218123.116 |
0.606 |
|
| 2018 |
Zackay A, Cotton JA, Sanders M, Hailu A, Nasereddin A, Warburg A, Jaffe CL. Genome wide comparison of Ethiopian Leishmania donovani strains reveals differences potentially related to parasite survival. Plos Genetics. 14: e1007133. PMID 29315303 DOI: 10.1371/Journal.Pgen.1007133 |
0.375 |
|
| 2017 |
Doyle SR, Laing R, Bartley DJ, Britton C, Chaudhry U, Gilleard JS, Holroyd N, Mable BK, Maitland K, Morrison AA, Tait A, Tracey A, Berriman M, Devaney E, Cotton JA, et al. A genome resequencing-based genetic map reveals the recombination landscape of an outbred parasitic nematode in the presence of polyploidy and polyandry. Genome Biology and Evolution. PMID 29267942 DOI: 10.1093/Gbe/Evx269 |
0.581 |
|
| 2017 |
Sargison ND, Redman E, Morrison AA, Bartley DJ, Jackson F, Naghra-van Gijzel H, Holroyd N, Berriman M, Cotton JA, Gilleard JS. A method for single pair mating in an obligate parasitic nematode. International Journal For Parasitology. PMID 29111440 DOI: 10.1016/J.Ijpara.2017.08.010 |
0.551 |
|
| 2017 |
Iantorno SA, Durrant C, Khan A, Sanders MJ, Beverley SM, Warren WC, Berriman M, Sacks DL, Cotton JA, Grigg ME. Gene Expression in Leishmania Is Regulated Predominantly by Gene Dosage. Mbio. 8. PMID 28900023 DOI: 10.1128/Mbio.01393-17 |
0.579 |
|
| 2017 |
Dumetz F, Imamura H, Sanders M, Seblova V, Myskova J, Pescher P, Vanaerschot M, Meehan CJ, Cuypers B, De Muylder G, Späth GF, Bussotti G, Vermeesch JR, Berriman M, Cotton JA, et al. Modulation of Aneuploidy in Leishmania donovani during Adaptation to Different In Vitro and In Vivo Environments and Its Impact on Gene Expression. Mbio. 8. PMID 28536289 DOI: 10.1128/Mbio.00599-17 |
0.57 |
|
| 2017 |
Cotton JA. The Expanding World of Human Leishmaniasis. Trends in Parasitology. PMID 28319012 DOI: 10.1016/J.Pt.2017.02.002 |
0.305 |
|
| 2017 |
Coughlan S, Mulhair P, Sanders M, Schonian G, Cotton JA, Downing T. The genome of Leishmania adleri from a mammalian host highlights chromosome fission in Sauroleishmania. Scientific Reports. 7: 43747. PMID 28256610 DOI: 10.1038/Srep43747 |
0.375 |
|
| 2017 |
Rutledge GG, Böhme U, Sanders M, Reid AJ, Cotton JA, Maiga-Ascofare O, Djimdé AA, Apinjoh TO, Amenga-Etego L, Manske M, Barnwell JW, Renaud F, Ollomo B, Prugnolle F, Anstey NM, et al. Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution. Nature. PMID 28117441 DOI: 10.1038/Nature21038 |
0.567 |
|
| 2017 |
Valdivia HO, Almeida LV, Roatt BM, Reis-Cunha JL, Pereira AA, Gontijo C, Fujiwara RT, Reis AB, Sanders MJ, Cotton JA, Bartholomeu DC. Comparative genomics of canine-isolated Leishmania (Leishmania) amazonensis from an endemic focus of visceral leishmaniasis in Governador Valadares, southeastern Brazil. Scientific Reports. 7: 40804. PMID 28091623 DOI: 10.1038/Srep40804 |
0.321 |
|
| 2016 |
Cotton JA, Steinbiss S, Yokoi T, Tsai IJ, Kikuchi T. An expressed, endogenous Nodavirus-like element captured by a retrotransposon in the genome of the plant parasitic nematode Bursaphelenchus xylophilus. Scientific Reports. 6: 39749. PMID 28004836 DOI: 10.1038/Srep39749 |
0.335 |
|
| 2016 |
Bennuru S, Cotton JA, Ribeiro JM, Grote A, Harsha B, Holroyd N, Mhashilkar A, Molina DM, Randall AZ, Shandling AD, Unnasch TR, Ghedin E, Berriman M, Lustigman S, Nutman TB. Stage-Specific Transcriptome and Proteome Analyses of the Filarial Parasite Onchocerca volvulus and Its Wolbachia Endosymbiont. Mbio. 7. PMID 27881553 DOI: 10.1128/Mbio.02028-16 |
0.52 |
|
| 2016 |
Cotton JA, Bennuru S, Grote A, Harsha B, Tracey A, Beech R, Doyle SR, Dunn M, Hotopp JC, Holroyd N, Kikuchi T, Lambert O, Mhashilkar A, Mutowo P, Nursimulu N, et al. The genome of Onchocerca volvulus, agent of river blindness. Nature Microbiology. 2: 16216. PMID 27869790 DOI: 10.1038/Nmicrobiol.2016.216 |
0.551 |
|
| 2016 |
Crellen T, Walker M, Lamberton PH, Kabatereine NB, Tukahebwa EM, Cotton JA, Webster JP. Reduced efficacy of praziquantel against Schistosoma mansoni is associated with multiple-rounds of mass drug administration. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 27470241 DOI: 10.1093/Cid/Ciw506 |
0.741 |
|
| 2016 |
Eves-van den Akker S, Laetsch DR, Thorpe P, Lilley CJ, Danchin EG, Da Rocha M, Rancurel C, Holroyd NE, Cotton JA, Szitenberg A, Grenier E, Montarry J, Mimee B, Duceppe MO, Boyes I, et al. The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence. Genome Biology. 17: 124. PMID 27286965 DOI: 10.1186/S13059-016-0985-1 |
0.339 |
|
| 2016 |
Laing R, Martinelli A, Tracey A, Holroyd N, Gilleard JS, Cotton JA. Haemonchus contortus: Genome Structure, Organization and Comparative Genomics. Advances in Parasitology. 93: 569-98. PMID 27238013 DOI: 10.1016/Bs.Apar.2016.02.016 |
0.388 |
|
| 2016 |
Mondelaers A, Sanchez-Cañete MP, Hendrickx S, Eberhardt E, Garcia-Hernandez R, Lachaud L, Cotton J, Sanders M, Cuypers B, Imamura H, Dujardin JC, Delputte P, Cos P, Caljon G, Gamarro F, et al. Genomic and Molecular Characterization of Miltefosine Resistance in Leishmania infantum Strains with Either Natural or Acquired Resistance through Experimental Selection of Intracellular Amastigotes. Plos One. 11: e0154101. PMID 27123924 DOI: 10.1371/Journal.Pone.0154101 |
0.3 |
|
| 2016 |
Imamura H, Downing T, Van den Broeck F, Sanders MJ, Rijal S, Sundar S, Mannaert A, Vanaerschot M, Berg M, De Muylder G, Dumetz F, Cuypers B, Maes I, Domagalska M, Decuypere S, ... ... Cotton JA, et al. Evolutionary genomics of epidemic visceral leishmaniasis in the Indian subcontinent. Elife. 5. PMID 27003289 DOI: 10.7554/Elife.12613 |
0.585 |
|
| 2016 |
Crellen T, Allan F, David S, Durrant C, Huckvale T, Holroyd N, Emery AM, Rollinson D, Aanensen DM, Berriman M, Webster JP, Cotton JA. Whole genome resequencing of the human parasite Schistosoma mansoni reveals population history and effects of selection. Scientific Reports. 6: 20954. PMID 26879532 DOI: 10.1038/Srep20954 |
0.775 |
|
| 2016 |
Hunt VL, Tsai IJ, Coghlan A, Reid AJ, Holroyd N, Foth BJ, Tracey A, Cotton JA, Stanley EJ, Beasley H, Bennett HM, Brooks K, Harsha B, Kajitani R, Kulkarni A, et al. The genomic basis of parasitism in the Strongyloides clade of nematodes. Nature Genetics. PMID 26829753 DOI: 10.1038/Ng.3495 |
0.568 |
|
| 2016 |
Shaw CD, Lonchamp J, Downing T, Imamura H, Freeman TM, Cotton JA, Sanders M, Blackburn G, Dujardin JC, Rijal S, Khanal B, Illingworth CJ, Coombs GH, Carter KC. In vitro selection of miltefosine resistance in promastigotes of Leishmania donovani from Nepal: genomic and metabolomic characterization. Molecular Microbiology. 99: 1134-48. PMID 26713880 DOI: 10.1111/Mmi.13291 |
0.304 |
|
| 2016 |
Imamura H, Downing T, Broeck FVd, Sanders MJ, Rijal S, Sundar S, Mannaert A, Vanaerschot M, Berg M, Muylder GD, Dumetz F, Cuypers B, Maes I, Domagalska M, Decuypere S, ... ... Cotton JA, et al. Author response: Evolutionary genomics of epidemic visceral leishmaniasis in the Indian subcontinent Elife. DOI: 10.7554/Elife.12613.031 |
0.554 |
|
| 2015 |
Kuo HC, Chen SF, Fang YP, Cotton JA, Parker JD, Csorba G, Lim BK, Eger JL, Chen CH, Chou CH, Rossiter SJ. Speciation processes in putative island endemic sister bat species: false impressions from mitochondrial DNA and microsatellite data. Molecular Ecology. PMID 26475683 DOI: 10.1111/Mec.13425 |
0.766 |
|
| 2015 |
Lamberton PH, Crellen T, Cotton JA, Webster JP. Modelling the effects of mass drug administration on the molecular epidemiology of schistosomes. Advances in Parasitology. 87: 293-327. PMID 25765198 DOI: 10.1016/Bs.Apar.2014.12.006 |
0.785 |
|
| 2014 |
Dujardin JC, Mannaert A, Durrant C, Cotton JA. Mosaic aneuploidy in Leishmania: the perspective of whole genome sequencing. Trends in Parasitology. 30: 554-5. PMID 25458156 DOI: 10.1016/J.Pt.2014.09.004 |
0.308 |
|
| 2014 |
Foth BJ, Tsai IJ, Reid AJ, Bancroft AJ, Nichol S, Tracey A, Holroyd N, Cotton JA, Stanley EJ, Zarowiecki M, Liu JZ, Huckvale T, Cooper PJ, Grencis RK, Berriman M. Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction. Nature Genetics. 46: 693-700. PMID 24929830 DOI: 10.1038/Ng.3010 |
0.574 |
|
| 2014 |
Watanabe J, Hattori M, Berriman M, Lehane MJ, Hall N, Solano P, Aksoy S, Hide W, Touré Y, Attardo GM, Darby AC, Toyoda A, Hertz-Fowler C, Larkin DM, Cotton JA, et al. Genome sequence of the tsetse fly (Glossina morsitans ): Vector of African trypanosomiasis Science. 344: 380-386. PMID 24763584 DOI: 10.1126/Science.1249656 |
0.592 |
|
| 2014 |
Cotton JA, Lilley CJ, Jones LM, Kikuchi T, Reid AJ, Thorpe P, Tsai IJ, Beasley H, Blok V, Cock PJ, Eves-van den Akker S, Holroyd N, Hunt M, Mantelin S, Naghra H, et al. The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biology. 15: R43. PMID 24580726 DOI: 10.1186/Gb-2014-15-3-R43 |
0.575 |
|
| 2014 |
Rogers MB, Downing T, Smith BA, Imamura H, Sanders M, Svobodova M, Volf P, Berriman M, Cotton JA, Smith DF. Genomic confirmation of hybridisation and recent inbreeding in a vector-isolated Leishmania population. Plos Genetics. 10: e1004092. PMID 24453988 DOI: 10.1371/Journal.Pgen.1004092 |
0.582 |
|
| 2014 |
Rogers MB, Downing T, Smith BA, Imamura H, Sanders M, Svobodová M, Volf P, Berriman M, Cotton JA, Smith DF. Changes in SNP coverage depth pinpoint recombination breakpoints. Plos Genetics. DOI: 10.1371/Journal.Pgen.1004092.G005 |
0.463 |
|
| 2013 |
Tsagkogeorga G, Parker J, Stupka E, Cotton JA, Rossiter SJ. Phylogenomic analyses elucidate the evolutionary relationships of bats. Current Biology : Cb. 23: 2262-7. PMID 24184098 DOI: 10.1016/J.Cub.2013.09.014 |
0.364 |
|
| 2013 |
Parker J, Tsagkogeorga G, Cotton JA, Liu Y, Provero P, Stupka E, Rossiter SJ. Genome-wide signatures of convergent evolution in echolocating mammals. Nature. 502: 228-31. PMID 24005325 DOI: 10.1038/Nature12511 |
0.401 |
|
| 2013 |
Laing R, Kikuchi T, Martinelli A, Tsai IJ, Beech RN, Redman E, Holroyd N, Bartley DJ, Beasley H, Britton C, Curran D, Devaney E, Gilabert A, Hunt M, Jackson F, ... ... Cotton JA, et al. The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery. Genome Biology. 14: R88. PMID 23985316 DOI: 10.1186/Gb-2013-14-8-R88 |
0.592 |
|
| 2013 |
Saunders GI, Wasmuth JD, Beech R, Laing R, Hunt M, Naghra H, Cotton JA, Berriman M, Britton C, Gilleard JS. Characterization and comparative analysis of the complete Haemonchus contortus β-tubulin gene family and implications for benzimidazole resistance in strongylid nematodes. International Journal For Parasitology. 43: 465-75. PMID 23416426 DOI: 10.1016/J.Ijpara.2012.12.011 |
0.539 |
|
| 2013 |
Svinti V, Cotton JA, McInerney JO. New approaches for unravelling reassortment pathways. Bmc Evolutionary Biology. 13: 1. PMID 23279962 DOI: 10.1186/1471-2148-13-1 |
0.773 |
|
| 2013 |
Cotton J. Southeast Asia. Cold War Southeast Asia . Edited by Malcolm H. Murfett. Singapore: Marshal Cavendish Editions, 2012. Pp. 376. Bibliography, Notes, Index. Journal of Southeast Asian Studies. 44: 345-346. DOI: 10.1017/S0022463413000118 |
0.308 |
|
| 2012 |
Reid AJ, Vermont SJ, Cotton JA, Harris D, Hill-Cawthorne GA, Könen-Waisman S, Latham SM, Mourier T, Norton R, Quail MA, Sanders M, Shanmugam D, Sohal A, Wasmuth JD, Brunk B, et al. Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy. Plos Pathogens. 8: e1002567. PMID 22457617 DOI: 10.1371/Journal.Ppat.1002567 |
0.584 |
|
| 2012 |
San Mauro D, Gower DJ, Cotton JA, Zardoya R, Wilkinson M, Massingham T. Experimental design in phylogenetics: testing predictions from expected information. Systematic Biology. 61: 661-74. PMID 22328568 DOI: 10.1093/Sysbio/Sys028 |
0.472 |
|
| 2012 |
Davies KT, Cotton JA, Kirwan JD, Teeling EC, Rossiter SJ. Parallel signatures of sequence evolution among hearing genes in echolocating mammals: an emerging model of genetic convergence. Heredity. 108: 480-9. PMID 22167055 DOI: 10.1038/Hdy.2011.119 |
0.353 |
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| 2011 |
Downing T, Imamura H, Decuypere S, Clark TG, Coombs GH, Cotton JA, Hilley JD, de Doncker S, Maes I, Mottram JC, Quail MA, Rijal S, Sanders M, Schönian G, Stark O, et al. Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance. Genome Research. 21: 2143-56. PMID 22038251 DOI: 10.1101/Gr.123430.111 |
0.586 |
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| 2011 |
Kikuchi T, Cotton JA, Dalzell JJ, Hasegawa K, Kanzaki N, McVeigh P, Takanashi T, Tsai IJ, Assefa SA, Cock PJ, Otto TD, Hunt M, Reid AJ, Sanchez-Flores A, Tsuchihara K, et al. Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. Plos Pathogens. 7: e1002219. PMID 21909270 DOI: 10.1371/Journal.Ppat.1002219 |
0.576 |
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| 2011 |
Johnson LJ, Cotton JA, Lichtenstein CP, Elgar GS, Nichols RA, Polly PD, Le Comber SC. Stops making sense: translational trade-offs and stop codon reassignment. Bmc Evolutionary Biology. 11: 227. PMID 21801361 DOI: 10.1186/1471-2148-11-227 |
0.542 |
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| 2011 |
Loader SP, Wilkinson M, Cotton JA, John Measey G, Menegon M, Howell KM, Müller H, Gower DJ. Molecular phylogenetics of Boulengerula (Amphibia: Gymnophiona: Caeciliidae) and implications for taxonomy, biogeography and conservation Herpetological Journal. 21: 5-16. |
0.368 |
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| 2010 |
Cotton JA, McInerney JO. Eukaryotic genes of archaebacterial origin are more important than the more numerous eubacterial genes, irrespective of function. Proceedings of the National Academy of Sciences of the United States of America. 107: 17252-5. PMID 20852068 DOI: 10.1073/Pnas.1000265107 |
0.588 |
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| 2010 |
Liu Y, Cotton JA, Shen B, Han X, Rossiter SJ, Zhang S. Convergent sequence evolution between echolocating bats and dolphins. Current Biology : Cb. 20: R53-4. PMID 20129036 DOI: 10.1016/J.Cub.2009.11.058 |
0.323 |
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| 2009 |
San Mauro D, Gower DJ, Massingham T, Wilkinson M, Zardoya R, Cotton JA. Experimental design in caecilian systematics: phylogenetic information of mitochondrial genomes and nuclear rag1. Systematic Biology. 58: 425-38. PMID 20525595 DOI: 10.1093/Sysbio/Syp043 |
0.514 |
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| 2009 |
Zhao H, Rossiter SJ, Teeling EC, Li C, Cotton JA, Zhang S. The evolution of color vision in nocturnal mammals. Proceedings of the National Academy of Sciences of the United States of America. 106: 8980-5. PMID 19470491 DOI: 10.1073/Pnas.0813201106 |
0.312 |
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| 2009 |
Cotton JA, Wilkinson M. Supertrees join the mainstream of phylogenetics. Trends in Ecology & Evolution. 24: 1-3. PMID 19022523 DOI: 10.1016/J.Tree.2008.08.006 |
0.511 |
|
| 2009 |
Cotton J. Realism, Rationalism, Race: On the Early International Relations Discipline in Australia International Studies Quarterly. 53: 627-647. DOI: 10.1111/J.1468-2478.2009.00549.X |
0.303 |
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| 2008 |
McCann A, Cotton JA, McInerney JO. The tree of genomes: an empirical comparison of genome-phylogeny reconstruction methods. Bmc Evolutionary Biology. 8: 312. PMID 19014489 DOI: 10.1186/1471-2148-8-312 |
0.787 |
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| 2008 |
Li G, Wang J, Rossiter SJ, Jones G, Cotton JA, Zhang S. The hearing gene Prestin reunites echolocating bats. Proceedings of the National Academy of Sciences of the United States of America. 105: 13959-64. PMID 18776049 DOI: 10.1073/Pnas.0802097105 |
0.323 |
|
| 2008 |
McInerney JO, Cotton JA, Pisani D. The prokaryotic tree of life: past, present... and future? Trends in Ecology & Evolution. 23: 276-81. PMID 18367290 DOI: 10.1016/J.Tree.2008.01.008 |
0.717 |
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| 2008 |
Peterson KJ, Cotton JA, Gehling JG, Pisani D. The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil records. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 363: 1435-43. PMID 18192191 DOI: 10.1098/Rstb.2007.2233 |
0.53 |
|
| 2008 |
Cotton JA, Wilkinson M. Quantifying the potential utility of phylogenetic characters Taxon. 57: 131-136. |
0.355 |
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| 2007 |
Loader SP, Pisani D, Cotton JA, Gower DJ, Day JJ, Wilkinson M. Relative time scales reveal multiple origins of parallel disjunct distributions of African caecilian amphibians. Biology Letters. 3: 505-8. PMID 17609171 DOI: 10.1098/Rsbl.2007.0266 |
0.718 |
|
| 2007 |
Cotton JA, Wilkinson M. Majority-rule supertrees. Systematic Biology. 56: 445-52. PMID 17558966 DOI: 10.1080/10635150701416682 |
0.447 |
|
| 2007 |
Pisani D, Cotton JA, McInerney JO. Supertrees disentangle the chimerical origin of eukaryotic genomes. Molecular Biology and Evolution. 24: 1752-60. PMID 17504772 DOI: 10.1093/Molbev/Msm095 |
0.711 |
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| 2007 |
Wilkinson M, Cotton JA, Lapointe FJ, Pisani D. Properties of supertree methods in the consensus setting. Systematic Biology. 56: 330-7. PMID 17464887 DOI: 10.1080/10635150701245370 |
0.589 |
|
| 2006 |
Cotton JA, Page RD. The shape of human gene family phylogenies. Bmc Evolutionary Biology. 6: 66. PMID 16939643 DOI: 10.1186/1471-2148-6-66 |
0.556 |
|
| 2006 |
Cotton JA, Slater CS, Wilkinson M. Discriminating supported and unsupported relationships in supertrees using triplets. Systematic Biology. 55: 345-50. PMID 16611604 DOI: 10.1080/10635150500481556 |
0.442 |
|
| 2005 |
Wilkinson M, Pisani D, Cotton JA, Corfe I. Measuring support and finding unsupported relationships in supertrees. Systematic Biology. 54: 823-31. PMID 16243766 DOI: 10.1080/10635150590950362 |
0.59 |
|
| 2005 |
Wilkinson M, Cotton JA, Creevey C, Eulenstein O, Harris SR, Lapointe FJ, Levasseur C, McInerney JO, Pisani D, Thorley JL. The shape of supertrees to come: tree shape related properties of fourteen supertree methods. Systematic Biology. 54: 419-31. PMID 16012108 DOI: 10.1080/10635150590949832 |
0.761 |
|
| 2005 |
Cotton JA. Analytical methods for detecting paralogy in molecular datasets. Methods in Enzymology. 395: 700-24. PMID 15865991 DOI: 10.1016/S0076-6879(05)95036-2 |
0.309 |
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| 2005 |
Cotton JA, Page RD. Rates and patterns of gene duplication and loss in the human genome. Proceedings. Biological Sciences / the Royal Society. 272: 277-83. PMID 15705552 DOI: 10.1098/Rspb.2004.2969 |
0.572 |
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| 2004 |
Wilkinson M, Cotton JA, Thorley JL. The information content of trees and their matrix representations Systematic Biology. 53: 989-1001. PMID 15764566 DOI: 10.1080/10635150490522737 |
0.422 |
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| 2003 |
Cotton JA, Page RD. Gene tree parsimony vs uninode coding for phylogenetic reconstruction. Molecular Phylogenetics and Evolution. 29: 298-308. PMID 13678685 DOI: 10.1016/S1055-7903(03)00109-X |
0.537 |
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| 2002 |
Cotton JA, Page RD. Going nuclear: gene family evolution and vertebrate phylogeny reconciled. Proceedings. Biological Sciences / the Royal Society. 269: 1555-61. PMID 12184825 DOI: 10.1098/Rspb.2002.2074 |
0.552 |
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| 2002 |
Page RD, Cotton JA. Vertebrate phylogenomics: reconciled trees and gene duplications. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 536-47. PMID 11928506 |
0.498 |
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| 2001 |
Cotton J. Homologous recombination in animal mitochondria Genome Biology. 2: 1-5. DOI: 10.1186/Gb-2001-2-10-Reports0034 |
0.31 |
|
| 2000 |
Cotton J. The Emergence of an Independent East Timor: National and Regional Challenges Contemporary Southeast Asia: a Journal of International and Strategic Affairs. 22: 1-22. DOI: 10.1355/Cs22_1A |
0.318 |
|
| 1998 |
Cotton J. Bilateral Accomplishments and Multilateral Tasks in Northeast Asian Security Contemporary Southeast Asia: a Journal of International and Strategic Affairs. 20: 137-153. DOI: 10.1355/Cs20_2B |
0.309 |
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