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Judhajeet Ray - Publications

Affiliations: 
2015-2021 Cornell University, Ithaca, NY, United States 
 2021- Broad Institute of MIT and Harvard, USA 
Area:
Genomics technology, Transcription, Aptamer
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11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Roberts TC, Kushner M, Crowley JC, Ozer A, Wang J, Ray J, Lis JT, Zipfel WR. Nanoscale photobiotinylation, pulldown and sequencing of region-specific DNA from intact cells. Biorxiv : the Preprint Server For Biology. PMID 38105945 DOI: 10.1101/2023.12.04.569951  0.466
2022 Bergman DT, Jones TR, Liu V, Ray J, Jagoda E, Siraj L, Kang HY, Nasser J, Kane M, Rios A, Nguyen TH, Grossman SR, Fulco CP, Lander ES, Engreitz JM. Compatibility rules of human enhancer and promoter sequences. Nature. PMID 35594906 DOI: 10.1038/s41586-022-04877-w  0.402
2020 Ray J, Kruse A, Ozer A, Kajitani T, Johnson R, MacCoss M, Heck M, Lis JT. RNA aptamer capture of macromolecular complexes for mass spectrometry analysis. Nucleic Acids Research. PMID 32609809 DOI: 10.1093/Nar/Gkaa542  0.611
2019 Ray J, Munn PR, Vihervaara A, Lewis JJ, Ozer A, Danko CG, Lis JT. Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock. Proceedings of the National Academy of Sciences of the United States of America. PMID 31506350 DOI: 10.1073/Pnas.1901244116  0.627
2018 Auwardt SL, Seo YJ, Ilgu M, Ray J, Feldges RR, Shubham S, Bendickson L, Levine HA, Nilsen-Hamilton M. Aptamer-enabled uptake of small molecule ligands. Scientific Reports. 8: 15712. PMID 30356136 DOI: 10.1038/S41598-018-33887-W  0.751
2018 Kushner M, Wang J, Ozer A, Ray J, Lis J, Zipfel W. High-Resolution Locus-Specific Mapping of Chromatin Contacts using Two-Photon Photoactivated DNA Cross-Linking Biophysical Journal. 114: 255a. DOI: 10.1016/J.Bpj.2017.11.1416  0.509
2016 Ray J, Shin I, Ilgu M, Bendickson L, Gupta V, Kraus GA, Nilsen-Hamilton M. IMAGEtags: Quantifying mRNA Transcription in Real Time with Multiaptamer Reporters. Methods in Enzymology. 572: 193-213. PMID 27241755 DOI: 10.1016/Bs.Mie.2016.02.028  0.75
2015 Ilgu M, Bendickson L, Ray J, Wang T, Geraskin I, Kraus GA, Nilsen-Hamilton M. Light-up and FRET aptamer reporters; evaluating their applications for imaging transcription in eukaryotic cells. Methods (San Diego, Calif.). PMID 26707205 DOI: 10.1016/J.Ymeth.2015.12.009  0.769
2015 Mitra D, Bouthcko R, Ray J, Nilsen-Hamilton M. Detecting cells in time varying intensity images in confocal microscopy for gene expression studies in living cells Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9420. DOI: 10.1117/12.2081691  0.719
2014 Shin I, Ray J, Gupta V, Ilgu M, Beasley J, Bendickson L, Mehanovic S, Kraus GA, Nilsen-Hamilton M. Live-cell imaging of Pol II promoter activity to monitor gene expression with RNA IMAGEtag reporters. Nucleic Acids Research. 42: e90. PMID 24753407 DOI: 10.1093/Nar/Gku297  0.737
2012 Wang T, Ray J. Aptamer-based molecular imaging. Protein & Cell. 3: 739-54. PMID 22983904 DOI: 10.1007/S13238-012-2072-Z  0.488
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