| Year |
Citation |
Score |
| 2019 |
Luu RA, Schomer RA, Brunton CN, Truong R, Ta AP, Tan WA, Parales JV, Wang YJ, Huo YW, Liu SJ, Ditty JL, Stewart V, Parales RE. Hybrid Two-Component Sensors for Identification of Bacterial Chemoreceptor Function. Applied and Environmental Microbiology. PMID 31492670 DOI: 10.1128/Aem.01626-19 |
0.775 |
|
| 2019 |
Zhang X, Hughes JG, Subuyuj GA, Ditty JL, Parales RE. Chemotaxis of F1 to Alcohols is Mediated by the Carboxylic Acid Receptor McfP. Applied and Environmental Microbiology. PMID 31471307 DOI: 10.1128/AEM.01625-19 |
0.512 |
|
| 2018 |
Parales RE, Ditty JL. Chemotaxis to Atypical Chemoattractants by Soil Bacteria. Methods in Molecular Biology (Clifton, N.J.). 1729: 255-280. PMID 29429097 DOI: 10.1007/978-1-4939-7577-8_21 |
0.344 |
|
| 2017 |
Parales RE, Navara R, Gettys R, Huang JJ. Genome Sequence of Pseudomonas putida Strain ASAD, an Acetylsalicylic Acid-Degrading Bacterium. Genome Announcements. 5. PMID 29025955 DOI: 10.1128/genomeA.01169-17 |
0.741 |
|
| 2017 |
Hughes JG, Zhang X, Parales JV, Ditty JL, Parales RE. Pseudomonas putida F1 uses energy taxis to sense hydroxycinnamic acids. Microbiology (Reading, England). PMID 28954643 DOI: 10.1099/mic.0.000533 |
0.587 |
|
| 2015 |
Timm CM, Campbell AG, Utturkar SM, Jun SR, Parales RE, Tan WA, Robeson MS, Lu TY, Jawdy S, Brown SD, Ussery DW, Schadt CW, Tuskan GA, Doktycz MJ, Weston DJ, et al. Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment. Frontiers in Microbiology. 6: 1118. PMID 26528266 DOI: 10.3389/Fmicb.2015.01118 |
0.773 |
|
| 2015 |
Parales RE, Luu RA, Hughes JG, Ditty JL. Bacterial chemotaxis to xenobiotic chemicals and naturally-occurring analogs. Current Opinion in Biotechnology. 33: 318-26. PMID 25889452 DOI: 10.1016/J.Copbio.2015.03.017 |
0.779 |
|
| 2015 |
Luu RA, Kootstra JD, Nesteryuk V, Brunton CN, Parales JV, Ditty JL, Parales RE. Integration of chemotaxis, transport and catabolism in Pseudomonas putida and identification of the aromatic acid chemoreceptor PcaY. Molecular Microbiology. 96: 134-47. PMID 25582673 DOI: 10.1111/Mmi.12929 |
0.799 |
|
| 2015 |
Mahan KM, Penrod JT, Ju KS, Al Kass N, Tan WA, Truong R, Parales JV, Parales RE. Selection for growth on 3-nitrotoluene by 2-nitrotoluene-utilizing Acidovorax sp. strain JS42 identifies nitroarene dioxygenases with altered specificities. Applied and Environmental Microbiology. 81: 309-19. PMID 25344236 DOI: 10.1128/Aem.02772-14 |
0.745 |
|
| 2014 |
Harwood CS, Parales RE. David T. Gibson: from biodegradation to biocatalysis. Proceedings of the National Academy of Sciences of the United States of America. 111: 16980-1. PMID 25422435 DOI: 10.1073/Pnas.1420371111 |
0.529 |
|
| 2014 |
Parales RE, Nesteryuk V, Hughes JG, Luu RA, Ditty JL. Cytosine chemoreceptor McpC in Pseudomonas putida F1 also detects nicotinic acid. Microbiology (Reading, England). 160: 2661-9. PMID 25294107 DOI: 10.1099/Mic.0.081968-0 |
0.784 |
|
| 2013 |
Parales RE, Luu RA, Chen GY, Liu X, Wu V, Lin P, Hughes JG, Nesteryuk V, Parales JV, Ditty JL. Pseudomonas putida F1 has multiple chemoreceptors with overlapping specificity for organic acids. Microbiology (Reading, England). 159: 1086-96. PMID 23618999 DOI: 10.1099/Mic.0.065698-0 |
0.791 |
|
| 2013 |
Ditty JL, Williams KM, Keller MM, Chen GY, Liu X, Parales RE. Integrating grant-funded research into the undergraduate biology curriculum using IMG-ACT. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. 41: 16-23. PMID 23382122 DOI: 10.1002/Bmb.20662 |
0.599 |
|
| 2013 |
Luu RA, Schneider BJ, Ho CC, Nesteryuk V, Ngwesse SE, Liu X, Parales JV, Ditty JL, Parales RE. Taxis of Pseudomonas putida F1 toward phenylacetic acid is mediated by the energy taxis receptor Aer2. Applied and Environmental Microbiology. 79: 2416-23. PMID 23377939 DOI: 10.1128/Aem.03895-12 |
0.791 |
|
| 2012 |
Król JE, Penrod JT, McCaslin H, Rogers LM, Yano H, Stancik AD, Dejonghe W, Brown CJ, Parales RE, Wuertz S, Top EM. Role of IncP-1β plasmids pWDL7::rfp and pNB8c in chloroaniline catabolism as determined by genomic and functional analyses. Applied and Environmental Microbiology. 78: 828-38. PMID 22101050 DOI: 10.1128/Aem.07480-11 |
0.781 |
|
| 2011 |
Ju KS, Parales RE. Evolution of a new bacterial pathway for 4-nitrotoluene degradation. Molecular Microbiology. 82: 355-64. PMID 21895789 DOI: 10.1111/J.1365-2958.2011.07817.X |
0.743 |
|
| 2010 |
Ju KS, Parales RE. Nitroaromatic compounds, from synthesis to biodegradation. Microbiology and Molecular Biology Reviews : Mmbr. 74: 250-72. PMID 20508249 DOI: 10.1128/Mmbr.00006-10 |
0.685 |
|
| 2010 |
Lacal J, Alfonso C, Liu X, Parales RE, Morel B, Conejero-Lara F, Rivas G, Duque E, Ramos JL, Krell T. Identification of a chemoreceptor for tricarboxylic acid cycle intermediates: differential chemotactic response towards receptor ligands. The Journal of Biological Chemistry. 285: 23126-36. PMID 20498372 DOI: 10.1074/Jbc.M110.110403 |
0.65 |
|
| 2009 |
Ju KS, Parales RE. Application of nitroarene dioxygenases in the design of novel strains that degrade chloronitrobenzenes. Microbial Biotechnology. 2: 241-52. PMID 21261918 DOI: 10.1111/J.1751-7915.2008.00083.X |
0.728 |
|
| 2009 |
Ju KS, Parales JV, Parales RE. Reconstructing the evolutionary history of nitrotoluene detection in the transcriptional regulator NtdR. Molecular Microbiology. 74: 826-43. PMID 19849778 DOI: 10.1111/J.1365-2958.2009.06904.X |
0.747 |
|
| 2009 |
Liu X, Parales RE. Bacterial chemotaxis to atrazine and related s-triazines. Applied and Environmental Microbiology. 75: 5481-8. PMID 19581468 DOI: 10.1128/AEM.01030-09 |
0.675 |
|
| 2009 |
Liu X, Wood PL, Parales JV, Parales RE. Chemotaxis to pyrimidines and identification of a cytosine chemoreceptor in Pseudomonas putida. Journal of Bacteriology. 191: 2909-16. PMID 19251854 DOI: 10.1128/Jb.01708-08 |
0.771 |
|
| 2008 |
Parales RE, Parales JV, Pelletier DA, Ditty JL. Chapter 1 Diversity of Microbial Toluene Degradation Pathways Advances in Applied Microbiology. 64: 1-73. PMID 18485280 DOI: 10.1016/S0065-2164(08)00401-2 |
0.58 |
|
| 2008 |
Liu X, Parales RE. Chemotaxis of Escherichia coli to pyrimidines: a new role for the signal transducer tap. Journal of Bacteriology. 190: 972-9. PMID 18065551 DOI: 10.1128/Jb.01590-07 |
0.665 |
|
| 2007 |
Ferraro DJ, Brown EN, Yu CL, Parales RE, Gibson DT, Ramaswamy S. Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1. Bmc Structural Biology. 7: 10. PMID 17349044 DOI: 10.1186/1472-6807-7-10 |
0.532 |
|
| 2007 |
Yu CL, Liu W, Ferraro DJ, Brown EN, Parales JV, Ramaswamy S, Zylstra GJ, Gibson DT, Parales RE. Purification, characterization, and crystallization of the components of a biphenyl dioxygenase system from Sphingobium yanoikuyae B1. Journal of Industrial Microbiology & Biotechnology. 34: 311-24. PMID 17211635 DOI: 10.1007/S10295-006-0199-8 |
0.56 |
|
| 2007 |
He Z, Parales RE, Spain JC, Johnson GR. Novel organization of catechol meta pathway genes in the nitrobenzene degrader Comamonas sp. JS765 and its evolutionary implication. Journal of Industrial Microbiology & Biotechnology. 34: 99-104. PMID 16947040 DOI: 10.1007/S10295-006-0170-8 |
0.436 |
|
| 2006 |
Ju KS, Parales RE. Control of substrate specificity by active-site residues in nitrobenzene dioxygenase. Applied and Environmental Microbiology. 72: 1817-24. PMID 16517627 DOI: 10.1128/Aem.72.3.1817-1824.2006 |
0.703 |
|
| 2005 |
Lee KS, Parales JV, Friemann R, Parales RE. Active site residues controlling substrate specificity in 2-nitrotoluene dioxygenase from Acidovorax sp. strain JS42. Journal of Industrial Microbiology & Biotechnology. 32: 465-73. PMID 16175409 DOI: 10.1007/S10295-005-0021-Z |
0.408 |
|
| 2005 |
Parales RE, Huang R, Yu CL, Parales JV, Lee FK, Lessner DJ, Ivkovic-Jensen MM, Liu W, Friemann R, Ramaswamy S, Gibson DT. Purification, characterization, and crystallization of the components of the nitrobenzene and 2-nitrotoluene dioxygenase enzyme systems. Applied and Environmental Microbiology. 71: 3806-14. PMID 16000792 DOI: 10.1128/Aem.71.7.3806-3814.2005 |
0.551 |
|
| 2005 |
Karlsson A, Parales JV, Parales RE, Gibson DT, Eklund H, Ramaswamy S. NO binding to naphthalene dioxygenase. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 10: 483-9. PMID 15942729 DOI: 10.1007/S00775-005-0657-1 |
0.521 |
|
| 2005 |
Friemann R, Ivkovic-Jensen MM, Lessner DJ, Yu CL, Gibson DT, Parales RE, Eklund H, Ramaswamy S. Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase. Journal of Molecular Biology. 348: 1139-51. PMID 15854650 DOI: 10.1016/J.Jmb.2005.03.052 |
0.531 |
|
| 2003 |
Lessner DJ, Parales RE, Narayan S, Gibson DT. Expression of the nitroarene dioxygenase genes in Comamonas sp. strain JS765 and Acidovorax sp. strain JS42 is induced by multiple aromatic compounds. Journal of Bacteriology. 185: 3895-904. PMID 12813084 DOI: 10.1128/Jb.185.13.3895-3904.2003 |
0.637 |
|
| 2003 |
Parales RE. The role of active-site residues in naphthalene dioxygenase. Journal of Industrial Microbiology & Biotechnology. 30: 271-8. PMID 12695887 DOI: 10.1007/S10295-003-0043-3 |
0.438 |
|
| 2003 |
Karlsson A, Parales JV, Parales RE, Gibson DT, Eklund H, Ramaswamy S. Crystal structure of naphthalene dioxygenase: side-on binding of dioxygen to iron. Science (New York, N.Y.). 299: 1039-42. PMID 12586937 DOI: 10.1126/science.1078020 |
0.466 |
|
| 2003 |
Karlsson A, Eklund H, Ramaswamy S, Parales JV, Parales RE, Gibson DT. Crystal structures of naphthalene dioxygenase along the reaction pathway Journal of Inorganic Biochemistry. 96: 164. DOI: 10.1016/S0162-0134(03)80667-0 |
0.435 |
|
| 2002 |
Parales RE, Harwood CS. Bacterial chemotaxis to pollutants and plant-derived aromatic molecules. Current Opinion in Microbiology. 5: 266-73. PMID 12057680 DOI: 10.1016/S1369-5274(02)00320-X |
0.611 |
|
| 2002 |
Lessner DJ, Johnson GR, Parales RE, Spain JC, Gibson DT. Molecular characterization and substrate specificity of nitrobenzene dioxygenase from Comamonas sp. strain JS765. Applied and Environmental Microbiology. 68: 634-41. PMID 11823201 DOI: 10.1128/Aem.68.2.634-641.2002 |
0.634 |
|
| 2002 |
Boyd DR, Sharma ND, Modyanova LV, Carroll JG, Malone JF, Allen CCR, Hamilton JTG, Gibson DT, Parales RE, Dalton H. Dioxygenase-catalyzed cis-dihydroxylation of pyridine-ring systems Canadian Journal of Chemistry. 80: 589-600. DOI: 10.1139/V02-062 |
0.451 |
|
| 2001 |
Yu CL, Parales RE, Gibson DT. Multiple mutations at the active site of naphthalene dioxygenase affect regioselectivity and enantioselectivity. Journal of Industrial Microbiology & Biotechnology. 27: 94-103. PMID 11641767 DOI: 10.1038/sj.jim.7000168 |
0.543 |
|
| 2000 |
Parales RE, Resnick SM, Yu CL, Boyd DR, Sharma ND, Gibson DT. Regioselectivity and enantioselectivity of naphthalene dioxygenase during arene cis-dihydroxylation: control by phenylalanine 352 in the alpha subunit. Journal of Bacteriology. 182: 5495-504. PMID 10986254 DOI: 10.1128/Jb.182.19.5495-5504.2000 |
0.584 |
|
| 2000 |
Parales RE, Ditty JL, Harwood CS. Toluene-degrading bacteria are chemotactic towards the environmental pollutants benzene, toluene, and trichloroethylene Applied and Environmental Microbiology. 66: 4098-4104. PMID 10966434 DOI: 10.1128/Aem.66.9.4098-4104.2000 |
0.661 |
|
| 2000 |
Gibson DT, Parales RE. Aromatic hydrocarbon dioxygenases in environmental biotechnology. Current Opinion in Biotechnology. 11: 236-43. PMID 10851146 DOI: 10.1016/S0958-1669(00)00090-2 |
0.543 |
|
| 2000 |
Karlsson A, Parales JV, Parales RE, Gibson DT, Eklund H, Ramaswamy S. The reduction of the Rieske iron-sulfur cluster in naphthalene dioxygenase by X-rays. Journal of Inorganic Biochemistry. 78: 83-7. PMID 10714709 DOI: 10.1016/S0162-0134(99)00213-5 |
0.495 |
|
| 2000 |
Parales RE, Lee K, Resnick SM, Jiang H, Lessner DJ, Gibson DT. Substrate specificity of naphthalene dioxygenase: effect of specific amino acids at the active site of the enzyme. Journal of Bacteriology. 182: 1641-9. PMID 10692370 DOI: 10.1128/Jb.182.6.1641-1649.2000 |
0.605 |
|
| 2000 |
Carredano E, Karlsson A, Kauppi B, Choudhury D, Parales RE, Parales JV, Lee K, Gibson DT, Eklund H, Ramaswamy S. Substrate binding site of naphthalene 1,2-dioxygenase: functional implications of indole binding. Journal of Molecular Biology. 296: 701-12. PMID 10669618 DOI: 10.1006/Jmbi.1999.3462 |
0.585 |
|
| 1999 |
Parales RE, Parales JV, Gibson DT. Aspartate 205 in the catalytic domain of naphthalene dioxygenase is essential for activity. Journal of Bacteriology. 181: 1831-7. PMID 10074076 DOI: 10.1128/Jb.181.6.1831-1837.1999 |
0.594 |
|
| 1999 |
Jiang H, Parales RE, Gibson DT. The alpha subunit of toluene dioxygenase from Pseudomonas putida F1 can accept electrons from reduced FerredoxinTOL but is catalytically inactive in the absence of the beta subunit. Applied and Environmental Microbiology. 65: 315-8. PMID 9872799 DOI: 10.1128/Aem.65.1.315-318.1999 |
0.542 |
|
| 1998 |
Kauppi B, Lee K, Carredano E, Parales RE, Gibson DT, Eklund H, Ramaswamy S. Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase. Structure (London, England : 1993). 6: 571-86. PMID 9634695 DOI: 10.1016/S0969-2126(98)00059-8 |
0.573 |
|
| 1998 |
Parales RE, Emig MD, Lynch NA, Gibson DT. Substrate specificities of hybrid naphthalene and 2,4-dinitrotoluene dioxygenase enzyme systems. Journal of Bacteriology. 180: 2337-44. PMID 9573183 DOI: 10.1128/Jb.180.9.2337-2344.1998 |
0.574 |
|
| 1998 |
Parales JV, Parales RE, Resnick SM, Gibson DT. Enzyme specificity of 2-nitrotoluene 2,3-dioxygenase from Pseudomonas sp. strain JS42 is determined by the C-terminal region of the alpha subunit of the oxygenase component. Journal of Bacteriology. 180: 1194-9. PMID 9495758 DOI: 10.1128/Jb.180.5.1194-1199.1998 |
0.645 |
|
| 1997 |
Parales RE, Ontl TA, Gibson DT. Cloning and sequence analysis of a catechol 2,3-dioxygenase gene from the nitrobenzene-degrading strain Comamonas sp JS765. Journal of Industrial Microbiology & Biotechnology. 19: 385-91. PMID 9451836 DOI: 10.1038/Sj.Jim.2900420 |
0.653 |
|
| 1997 |
Lee K, Kauppi B, Parales RE, Gibson DT, Ramaswamy S. Purification and crystallization of the oxygenase component of naphthalene dioxygenase in native and selenomethionine-derivatized forms. Biochemical and Biophysical Research Communications. 241: 553-7. PMID 9425309 DOI: 10.1006/Bbrc.1997.7863 |
0.521 |
|
| 1996 |
Parales JV, Kumar A, Parales RE, Gibson DT. Cloning and sequencing of the genes encoding 2-nitrotoluene dioxygenase from Pseudomonas sp. JS42. Gene. 181: 57-61. PMID 8973308 DOI: 10.1016/S0378-1119(96)00462-3 |
0.568 |
|
| 1996 |
Harwood CS, Parales RE. The β-ketoadipate pathway and the biology of self-identity Annual Review of Microbiology. 50: 553-590. PMID 8905091 DOI: 10.1146/Annurev.Micro.50.1.553 |
0.582 |
|
| 1996 |
Jiang H, Parales RE, Lynch NA, Gibson DT. Site-directed mutagenesis of conserved amino acids in the alpha subunit of toluene dioxygenase: potential mononuclear non-heme iron coordination sites. Journal of Bacteriology. 178: 3133-9. PMID 8655491 DOI: 10.1128/Jb.178.11.3133-3139.1996 |
0.591 |
|
| 1994 |
Shanley MS, Harrison A, Parales RE, Kowalchuk G, Mitchell DJ, Ornston LN. Unusual G + C content and codon usage in catIJF, a segment of the ben-cat supra-operonic cluster in the Acinetobacter calcoaceticus chromosome. Gene. 138: 59-65. PMID 8125318 DOI: 10.1016/0378-1119(94)90783-8 |
0.564 |
|
| 1994 |
Romero-Steiner S, Parales RE, Harwood CS, Houghton JE. Characterization of the pcaR regulatory gene from Pseudomonas putida, which is required for the complete degradation of p-hydroxybenzoate Journal of Bacteriology. 176: 5771-5779. PMID 8083169 DOI: 10.1128/Jb.176.18.5771-5779.1994 |
0.605 |
|
| 1994 |
Harwood CS, Nichols NN, Kim MK, Ditty JL, Parales RE. Identification of the pcaRKF gene cluster from Pseudomonas putida: Involvement in chemotaxis, biodegradation, and transport of 4-hydroxybenzoate Journal of Bacteriology. 176: 6479-6488. PMID 7961399 DOI: 10.1128/Jb.176.21.6479-6488.1994 |
0.657 |
|
| 1993 |
Parales RE, Harwood CS. Regulation of the pcaIJ genes for aromatic acid degradation in Pseudomonas putida Journal of Bacteriology. 175: 5829-5838. PMID 8376330 DOI: 10.1128/Jb.175.18.5829-5838.1993 |
0.635 |
|
| 1993 |
Parales RE, Harwood CS. Construction and use of a new broad-host-range lacZ transcriptional fusion vector, pHRP309, for Gram - bacteria Gene. 133: 23-30. PMID 8224891 DOI: 10.1016/0378-1119(93)90220-W |
0.607 |
|
| 1992 |
Parales RE, Harwood CS. Characterization of the genes encoding β-ketoadipate:succinyl-coenzyme A transferase in Pseudomonas putida Journal of Bacteriology. 174: 4657-4666. PMID 1624453 DOI: 10.1128/Jb.174.14.4657-4666.1992 |
0.645 |
|
| 1990 |
Harwood CS, Parales RE, Dispensa M. Chemotaxis of Pseudomonas putida toward chlorinated benzoates Applied and Environmental Microbiology. 56: 1501-1503. PMID 2339899 DOI: 10.1128/Aem.56.5.1501-1503.1990 |
0.601 |
|
| 1990 |
Parales RE, Harwood CS. Nucleotide sequence of the gyrB gene of Pseudomonas putida Nucleic Acids Research. 18: 5880. PMID 2170947 DOI: 10.1093/Nar/18.19.5880 |
0.54 |
|
| 1986 |
Shanley MS, Neidle EL, Parales RE, Ornston LN. Cloning and expression of Acinetobacter calcoaceticus catBCDE genes in Pseudomonas putida and Escherichia coli. Journal of Bacteriology. 165: 557-63. PMID 3003031 DOI: 10.1128/Jb.165.2.557-563.1986 |
0.613 |
|
| Show low-probability matches. |