Year |
Citation |
Score |
2023 |
Nguyen TM, Craig DB, Tran D, Nguyen T, Draghici S. A novel approach for predicting upstream regulators (PURE) that affect gene expression. Scientific Reports. 13: 18571. PMID 37903768 DOI: 10.1038/s41598-023-41374-0 |
0.317 |
|
2021 |
Nguyen H, Tran D, Galazka JM, Costes SV, Beheshti A, Petereit J, Draghici S, Nguyen T. CPA: a web-based platform for consensus pathway analysis and interactive visualization. Nucleic Acids Research. PMID 34037798 DOI: 10.1093/nar/gkab421 |
0.381 |
|
2020 |
Saberian N, Shafi A, Peyvandipour A, Draghici S. MAGPEL: an autoMated pipeline for inferring vAriant-driven Gene PanEls from the full-length biomedical literature. Scientific Reports. 10: 12365. PMID 32703994 DOI: 10.1038/S41598-020-68649-0 |
0.427 |
|
2020 |
Peyvandipour A, Shafi A, Saberian N, Draghici S. Identification of cell types from single cell data using stable clustering. Scientific Reports. 10: 12349. PMID 32703984 DOI: 10.1038/S41598-020-66848-3 |
0.349 |
|
2020 |
Mitrea C, Bollig-Fischer A, Voichiţa C, Donato M, Romero R, Drăghici S. Detecting qualitative changes in biological systems. Scientific Reports. 10: 8146. PMID 32424123 DOI: 10.1038/s41598-020-62578-8 |
0.759 |
|
2020 |
Nguyen T, Shafi A, Nguyen TM, Schissler AG, Draghici S. NBIA: a network-based integrative analysis framework - applied to pathway analysis. Scientific Reports. 10: 4188. PMID 32144346 DOI: 10.1038/S41598-020-60981-9 |
0.443 |
|
2020 |
Szilagyi A, Gelencser Z, Romero R, Xu Y, Kiraly P, Demeter A, Palhalmi J, Gyorffy BA, Juhasz K, Hupuczi P, Kekesi KA, Meinhardt G, Papp Z, Draghici S, Erez O, et al. Placenta-Specific Genes, Their Regulation During Villous Trophoblast Differentiation and Dysregulation in Preterm Preeclampsia. International Journal of Molecular Sciences. 21. PMID 31963593 DOI: 10.3390/Ijms21020628 |
0.32 |
|
2019 |
Nguyen TM, Shafi A, Nguyen T, Draghici S. Correction to: Identifying significantly impacted pathways: a comprehensive review and assessment. Genome Biology. 20: 234. PMID 31718689 DOI: 10.1186/S13059-019-1882-1 |
0.305 |
|
2019 |
Nguyen TM, Shafi A, Nguyen T, Draghici S. Identifying significantly impacted pathways: a comprehensive review and assessment. Genome Biology. 20: 203. PMID 31597578 DOI: 10.1186/S13059-019-1790-4 |
0.397 |
|
2019 |
Shafi A, Nguyen T, Peyvandipour A, Draghici S. GSMA: an approach to identify robust global and test Gene Signatures using Meta-Analysis. Bioinformatics (Oxford, England). PMID 31329248 DOI: 10.1093/Bioinformatics/Btz561 |
0.396 |
|
2019 |
Tarca AL, Romero R, Benshalom-Tirosh N, Than NG, Gudicha DW, Done B, Pacora P, Chaiworapongsa T, Panaitescu B, Tirosh D, Gomez-Lopez N, Draghici S, Hassan SS, Erez O. The prediction of early preeclampsia: Results from a longitudinal proteomics study. Plos One. 14: e0217273. PMID 31163045 DOI: 10.1371/Journal.Pone.0217273 |
0.65 |
|
2019 |
Shafi A, Nguyen T, Peyvandipour A, Nguyen H, Draghici S. A Multi-Cohort and Multi-Omics Meta-Analysis Framework to Identify Network-Based Gene Signatures. Frontiers in Genetics. 10: 159. PMID 30941158 DOI: 10.3389/Fgene.2019.00159 |
0.445 |
|
2019 |
Nguyen H, Shrestha S, Tran D, Shafi A, Draghici S, Nguyen T. A Comprehensive Survey of Tools and Software for Active Subnetwork Identification. Frontiers in Genetics. 10: 155. PMID 30891064 DOI: 10.3389/Fgene.2019.00155 |
0.386 |
|
2018 |
Nguyen H, Shrestha S, Draghici S, Nguyen T. PINSPlus: A tool for tumor subtype discovery in integrated genomic data. Bioinformatics (Oxford, England). PMID 30590381 DOI: 10.1093/Bioinformatics/Bty1049 |
0.361 |
|
2018 |
Than NG, Romero R, Tarca AL, Kekesi KA, Xu Y, Xu Z, Juhasz K, Bhatti G, Leavitt RJ, Gelencser Z, Palhalmi J, Chung TH, Gyorffy BA, Orosz L, Demeter A, ... ... Draghici S, et al. Integrated Systems Biology Approach Identifies Novel Maternal and Placental Pathways of Preeclampsia. Frontiers in Immunology. 9: 1661. PMID 30135684 DOI: 10.3389/Fimmu.2018.01661 |
0.374 |
|
2018 |
Nguyen T, Mitrea C, Draghici S. Network-Based Approaches for Pathway Level Analysis. Current Protocols in Bioinformatics. 61: 8.25.1-8.25.24. PMID 30040185 DOI: 10.1002/Cpbi.42 |
0.459 |
|
2018 |
Peyvandipour A, Saberian N, Shafi A, Donato M, Draghici S. A novel computational approach for drug repurposing using systems biology. Bioinformatics (Oxford, England). PMID 29534151 DOI: 10.1093/Bioinformatics/Bty133 |
0.31 |
|
2017 |
Ansari S, Voichita C, Donato M, Tagett R, Draghici S. A novel pathway analysis approach based on the unexplained disregulation of genes. Proceedings of the Ieee. Institute of Electrical and Electronics Engineers. 105: 482-495. PMID 30337764 DOI: 10.1109/JPROC.2016.2531000 |
0.813 |
|
2017 |
Mitrea C, Wijesinghe P, Dyson G, Kruger A, Ruden DM, Draghici S, Bollig-Fischer A. Integrating 5hmC and gene expression data to infer regulatory mechanisms. Bioinformatics (Oxford, England). PMID 29220513 DOI: 10.1093/Bioinformatics/Btx777 |
0.367 |
|
2017 |
Nguyen T, Tagett R, Diaz D, Draghici S. A novel approach for data integration and disease subtyping. Genome Research. PMID 29066617 DOI: 10.1101/Gr.215129.116 |
0.409 |
|
2017 |
Ahsan S, Drăghici S. Identifying Significantly Impacted Pathways and Putative Mechanisms with iPathwayGuide. Current Protocols in Bioinformatics. 57: 7.15.1-7.15.30. PMID 28654712 DOI: 10.1002/cpbi.24 |
0.42 |
|
2017 |
Hanoudi S, Donato M, Draghici S. Identifying biologically relevant putative mechanisms in a given phenotype comparison. Plos One. 12: e0176950. PMID 28486531 DOI: 10.1371/Journal.Pone.0176950 |
0.448 |
|
2017 |
Shafi A, Mitrea C, Nguyen T, Draghici S. A survey of the approaches for identifying differential methylation using bisulfite sequencing data. Briefings in Bioinformatics. PMID 28334228 DOI: 10.1093/Bib/Bbx013 |
0.339 |
|
2017 |
Ansari S, Donato M, Saberian N, Draghici S. An approach to infer putative disease-specific mechanisms using neighboring gene networks. Bioinformatics (Oxford, England). PMID 28200075 DOI: 10.1093/Bioinformatics/Btx097 |
0.446 |
|
2016 |
Nguyen T, Diaz D, Tagett R, Draghici S. Overcoming the matched-sample bottleneck: an orthogonal approach to integrate omic data. Scientific Reports. 6: 29251. PMID 27403564 DOI: 10.1038/Srep29251 |
0.342 |
|
2016 |
Bokanizad B, Tagett R, Ansari S, Helmi BH, Draghici S. SPATIAL: A System-level PAThway Impact AnaLysis approach. Nucleic Acids Research. PMID 27193997 DOI: 10.1093/Nar/Gkw429 |
0.42 |
|
2016 |
Diaz D, Donato M, Draghici S. Integrating microRNA expression in pathway analysis F1000research. 5. DOI: 10.7490/F1000Research.1113578.1 |
0.361 |
|
2016 |
Ansari S, Voichita C, Donato M, Tagett R, Draghici S. A Novel Pathway Analysis Approach Based on the Unexplained Disregulation of Genes Proceedings of the Ieee. DOI: 10.1109/JPROC.2016.2531000 |
0.813 |
|
2016 |
Tomoiaga A, Westfall P, Donato M, Draghici S, Hassan S, Romero R, Tellaroli P. Pathway crosstalk effects: shrinkage and disentanglement using a Bayesian hierarchical model Statistics in Biosciences. 1-21. DOI: 10.1007/S12561-016-9160-1 |
0.387 |
|
2015 |
Nguyen T, Tagett R, Donato M, Mitrea C, Draghici S. A novel bi-level meta-analysis approach: applied to biological pathway analysis. Bioinformatics (Oxford, England). PMID 26471455 DOI: 10.1093/Bioinformatics/Btv588 |
0.403 |
|
2015 |
Chang HT, Akutsu T, Draghici S, Ray O, Pai TW. Intelligent Informatics in Translational Medicine. Biomed Research International. 2015: 717210. PMID 26064944 DOI: 10.1155/2015/717210 |
0.428 |
|
2015 |
Shafi A, Donato M, Draghici S. A systems biology approach for the identification of significantly perturbed genes Bcb 2015 - 6th Acm Conference On Bioinformatics, Computational Biology, and Health Informatics. 423-432. DOI: 10.1145/2808719.2808763 |
0.363 |
|
2014 |
Lin HS, Siddiq F, Talwar HS, Chen W, Voichita C, Draghici S, Jeyapalan G, Chatterjee M, Fribley A, Yoo GH, Sethi S, Kim H, Sukari A, Folbe AJ, Tainsky MA. Serum prognostic biomarkers in head and neck cancer patients. The Laryngoscope. 124: 1819-26. PMID 24347532 DOI: 10.1002/Lary.24567 |
0.736 |
|
2013 |
Mitrea C, Taghavi Z, Bokanizad B, Hanoudi S, Tagett R, Donato M, Voichiţa C, Drăghici S. Methods and approaches in the topology-based analysis of biological pathways. Frontiers in Physiology. 4: 278. PMID 24133454 DOI: 10.3389/fphys.2013.00278 |
0.802 |
|
2013 |
Donato M, Xu Z, Tomoiaga A, Granneman JG, Mackenzie RG, Bao R, Than NG, Westfall PH, Romero R, Draghici S. Analysis and correction of crosstalk effects in pathway analysis. Genome Research. 23: 1885-93. PMID 23934932 DOI: 10.1101/Gr.153551.112 |
0.422 |
|
2013 |
Taghavi Z, Movahedi NS, Draghici S, Chitsaz H. Distilled single-cell genome sequencing and de novo assembly for sparse microbial communities. Bioinformatics (Oxford, England). 29: 2395-401. PMID 23918251 DOI: 10.1093/Bioinformatics/Btt420 |
0.304 |
|
2013 |
Del Sorbo MR, Balzano W, Donato M, Draghici S. Assessing co-regulation of directly linked genes in biological networks using microarray time series analysis. Bio Systems. 114: 149-54. PMID 23876997 DOI: 10.1016/J.Biosystems.2013.07.006 |
0.475 |
|
2013 |
Chang HT, Calogero RA, Draghici S, Ray O, Pai TW. Intelligent informatics in biomedicine. Biomed Research International. 2013: 185839. PMID 23710437 DOI: 10.1155/2013/185839 |
0.37 |
|
2013 |
Voichita C, Donato M, Draghici S. A genetic algorithms framework for estimating individual gene contributions in signaling pathways 2013 Ieee Congress On Evolutionary Computation, Cec 2013. 650-657. DOI: 10.1109/CEC.2013.6557630 |
0.805 |
|
2012 |
Mercader JM, Puiggros M, Segrè AV, Planet E, Sorianello E, Sebastian D, Rodriguez-Cuenca S, Ribas V, Bonà s-Guarch S, Draghici S, Yang C, Mora S, Vidal-Puig A, Dupuis J, et al. Identification of novel type 2 diabetes candidate genes involved in the crosstalk between the mitochondrial and the insulin signaling systems. Plos Genetics. 8: e1003046. PMID 23236286 DOI: 10.1371/Journal.Pgen.1003046 |
0.401 |
|
2012 |
Tarca AL, Draghici S, Bhatti G, Romero R. Down-weighting overlapping genes improves gene set analysis. Bmc Bioinformatics. 13: 136. PMID 22713124 DOI: 10.1186/1471-2105-13-136 |
0.415 |
|
2012 |
Ansari NA, Bao R, Voichiţa C, Drăghici S. Detecting phenotype-specific interactions between biological processes from microarray data and annotations. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 1399-409. PMID 22547431 DOI: 10.1109/Tcbb.2012.65 |
0.778 |
|
2012 |
Xu Z, Voichiţa C, Drăghici S, Romero R. Z-BAG: A CLASSIFICATION ENSEMBLE SYSTEM WITH POSTERIOR PROBABILISTIC OUTPUTS Computational Intelligence. 29: 310-330. DOI: 10.1111/j.1467-8640.2012.00432.x |
0.736 |
|
2012 |
Voichita C, Donato M, Draghici S. Incorporating gene significance in the impact analysis of signaling pathways Proceedings - 2012 11th International Conference On Machine Learning and Applications, Icmla 2012. 1: 126-131. DOI: 10.1109/ICMLA.2012.230 |
0.801 |
|
2012 |
Beltrame L, Calura E, Popovici R, Draghici S, Cavalieri D, D'Incalci M. 666 The Biological Connection Markup Language – a Data Format to Visualize, Annotate and Analyze Biological Pathways European Journal of Cancer. 48. DOI: 10.1016/S0959-8049(12)71312-6 |
0.304 |
|
2011 |
Beltrame L, Calura E, Popovici RR, Rizzetto L, Guedez DR, Donato M, Romualdi C, Draghici S, Cavalieri D. The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways. Bioinformatics (Oxford, England). 27: 2127-33. PMID 21653523 DOI: 10.1093/Bioinformatics/Btr339 |
0.347 |
|
2010 |
Cavalieri D, Rivero D, Beltrame L, Buschow SI, Calura E, Rizzetto L, Gessani S, Gauzzi MC, Reith W, Baur A, Bonaiuti R, Brandizi M, De Filippo C, D'Oro U, Draghici S, et al. DC-ATLAS: a systems biology resource to dissect receptor specific signal transduction in dendritic cells. Immunome Research. 6: 10. PMID 21092113 DOI: 10.1186/1745-7580-6-10 |
0.325 |
|
2010 |
Done B, Khatri P, Done A, Drăghici S. Predicting novel human gene ontology annotations using semantic analysis. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 7: 91-9. PMID 20150671 DOI: 10.1109/Tcbb.2008.29 |
0.738 |
|
2010 |
Kandasamy K, Mohan SS, Raju R, Keerthikumar S, Kumar GS, Venugopal AK, Telikicherla D, Navarro JD, Mathivanan S, Pecquet C, Gollapudi SK, Tattikota SG, Mohan S, Padhukasahasram H, Subbannayya Y, ... ... Draghici S, et al. NetPath: a public resource of curated signal transduction pathways. Genome Biology. 11: R3. PMID 20067622 DOI: 10.1186/Gb-2010-11-1-R3 |
0.571 |
|
2009 |
Tarca AL, Draghici S, Romero R. Developing classifiers for the detection of cancer using multi-analytes. Methods in Molecular Biology (Clifton, N.J.). 520: 259-72. PMID 19381961 DOI: 10.1007/978-1-60327-811-9_19 |
0.338 |
|
2009 |
Tarca AL, Draghici S, Khatri P, Hassan SS, Mittal P, Kim JS, Kim CJ, Kusanovic JP, Romero R. A novel signaling pathway impact analysis. Bioinformatics (Oxford, England). 25: 75-82. PMID 18990722 DOI: 10.1093/Bioinformatics/Btn577 |
0.646 |
|
2009 |
Hassan SS, Tarca AL, Nhan-Chang C, Draghici S, Kim J, Mittal P, Kim CJ. 75: The molecular basis for sonographic cervical shortening: identification of differentially expressed genes as a function of cervical length American Journal of Obstetrics and Gynecology. 201: S42. DOI: 10.1016/J.Ajog.2009.10.090 |
0.329 |
|
2008 |
Han YM, Romero R, Kim JS, Tarca AL, Kim SK, Draghici S, Kusanovic JP, Gotsch F, Mittal P, Hassan SS, Kim CJ. Region-specific gene expression profiling: novel evidence for biological heterogeneity of the human amnion. Biology of Reproduction. 79: 954-61. PMID 18685129 DOI: 10.1095/Biolreprod.108.069260 |
0.381 |
|
2008 |
Rhee SY, Wood V, Dolinski K, Draghici S. Use and misuse of the gene ontology annotations. Nature Reviews. Genetics. 9: 509-15. PMID 18475267 DOI: 10.1038/Nrg2363 |
0.394 |
|
2008 |
Toft JH, Lian IA, Tarca AL, Erez O, Espinoza J, Eide IP, Bjørge L, Draghici S, Romero R, Austgulen R. Whole-genome microarray and targeted analysis of angiogenesis-regulating gene expression (ENG, FLT1, VEGF, PlGF) in placentas from pre-eclamptic and small-for-gestational-age pregnancies Journal of Maternal-Fetal and Neonatal Medicine. 21: 267-273. PMID 18330824 DOI: 10.1080/14767050801924118 |
0.327 |
|
2008 |
Kim JS, Romero R, Tarca AL, LaJeunesse C, Han YM, Kim MJ, Suh YL, Draghici S, Mittal P, Gotsch F, Kusanovic JP, Hassan S, Kim CJ. Gene expression profiling demonstrates a novel role for foetal fibrocytes and the umbilical vessels in human fetoplacental development. Journal of Cellular and Molecular Medicine. 12: 1317-30. PMID 18298660 DOI: 10.1111/J.1582-4934.2008.00284.X |
0.307 |
|
2008 |
Draghici S, Tarca AL, Yu L, Ethier S, Romero R. KUTE-BASE: storing, downloading and exporting MIAME-compliant microarray experiments in minutes rather than hours. Bioinformatics (Oxford, England). 24: 738-40. PMID 18024967 DOI: 10.1093/Bioinformatics/Btm559 |
0.354 |
|
2008 |
Voichiţa C, Khatri P, Drǎghici S. Identifying uncertainty regions in support vector machines using geometric margin and convex hulls Proceedings of the International Joint Conference On Neural Networks. 3319-3324. DOI: 10.1109/IJCNN.2008.4634269 |
0.737 |
|
2008 |
Dimmer EC, Huntley RP, Barrell DG, Binns D, Draghici S, Camon EB, Hubank M, Talmud PJ, Apweiler R, Lovering RC. The Gene Ontology ! Providing a Functional Role in Proteomic Studies Proteomics. 8. DOI: 10.1002/Pmic.200800002 |
0.463 |
|
2007 |
Lin HS, Talwar HS, Tarca AL, Ionan A, Chatterjee M, Ye B, Wojciechowski J, Mohapatra S, Basson MD, Yoo GH, Peshek B, Lonardo F, Pan CJ, Folbe AJ, Draghici S, et al. Autoantibody approach for serum-based detection of head and neck cancer. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. 16: 2396-405. PMID 18006929 DOI: 10.1158/1055-9965.Epi-07-0318 |
0.355 |
|
2007 |
Hassan SS, Romero R, Tarca AL, Draghici S, Pineles B, Bugrim A, Khalek N, Camacho N, Mittal P, Yoon BH, Espinoza J, Kim CJ, Sorokin Y, Malone J. Signature pathways identified from gene expression profiles in the human uterine cervix before and after spontaneous term parturition. American Journal of Obstetrics and Gynecology. 197: 250.e1-7. PMID 17826407 DOI: 10.1016/J.Ajog.2007.07.008 |
0.444 |
|
2007 |
Draghici S, Khatri P, Tarca AL, Amin K, Done A, Voichita C, Georgescu C, Romero R. A systems biology approach for pathway level analysis. Genome Research. 17: 1537-45. PMID 17785539 DOI: 10.1101/Gr.6202607 |
0.803 |
|
2007 |
Khatri P, Voichita C, Kattan K, Ansari N, Khatri A, Georgescu C, Tarca AL, Draghici S. Onto-Tools: new additions and improvements in 2006. Nucleic Acids Research. 35: W206-11. PMID 17584796 DOI: 10.1093/Nar/Gkm327 |
0.778 |
|
2007 |
Done B, Khatri P, Done A, Draghici S. Semantic analysis of genome annotations using weighting schemes 2007 Ieee Symposium On Computational Intelligence and Bioinformatics and Computational Biology, Cibcb 2007. 212-218. |
0.731 |
|
2007 |
Khatri P, Draghici S, Tarca AL, Hassan SS, Romero R. A system biology approach for the steady-state analysis of gene signaling networks Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4756: 32-41. |
0.567 |
|
2006 |
Drăghici S, Sellamuthu S, Khatri P. Babel's tower revisited: a universal resource for cross-referencing across annotation databases. Bioinformatics (Oxford, England). 22: 2934-9. PMID 17068090 DOI: 10.1093/Bioinformatics/Btl372 |
0.493 |
|
2006 |
Tarca AL, Romero R, Draghici S. Analysis of microarray experiments of gene expression profiling. American Journal of Obstetrics and Gynecology. 195: 373-88. PMID 16890548 DOI: 10.1016/J.Ajog.2006.07.001 |
0.447 |
|
2006 |
Khatri P, Desai V, Tarca AL, Sellamuthu S, Wildman DE, Romero R, Draghici S. New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate. Nucleic Acids Research. 34: W626-31. PMID 16845086 DOI: 10.1093/Nar/Gkl213 |
0.595 |
|
2006 |
Draghici S, Khatri P, Eklund AC, Szallasi Z. Reliability and reproducibility issues in DNA microarray measurements. Trends in Genetics : Tig. 22: 101-9. PMID 16380191 DOI: 10.1016/J.Tig.2005.12.005 |
0.573 |
|
2006 |
Mittal P, Tarca AL, Draghici S, Espinoza J, Nien JK, Gomez R, Yoon BH, Kusanovic JP, Hassan S, Romero R, Tromp G. The myometrial transcriptome in spontaneous labor at term and in failure to progress in labor (arrest of dilatation and arrest of descent) American Journal of Obstetrics and Gynecology. 195: S135. DOI: 10.1016/J.Ajog.2006.10.468 |
0.345 |
|
2006 |
Hassan S, Romero R, Tarca AL, Draghici S, Khalek N, Camacho N, Mittal P, Yoon BH, Espinoza J, Sorokin Y, Malone J. Gene expression signature pathways in the human uterine cervix before and after spontaneous term parturition American Journal of Obstetrics and Gynecology. 195: S30. DOI: 10.1016/J.Ajog.2006.10.080 |
0.391 |
|
2006 |
Montenegro D, Romero R, Pineles BL, Tarca AL, Kim YM, Draghici S, Kusanovic JP, Erez O, Mazaki-Tovi S, Hassan S, Espinoza J, Kim CJ. A role for micrornas – key regulators of gene expression – in chorioamnionitis and parturition American Journal of Obstetrics and Gynecology. 195: S11. DOI: 10.1016/J.Ajog.2006.10.031 |
0.338 |
|
2005 |
Rakhade SN, Yao B, Ahmed S, Asano E, Beaumont TL, Shah AK, Draghici S, Krauss R, Chugani HT, Sood S, Loeb JA. A common pattern of persistent gene activation in human neocortical epileptic foci. Annals of Neurology. 58: 736-47. PMID 16240350 DOI: 10.1002/Ana.20633 |
0.36 |
|
2005 |
Krawetz SA, Draghici S, Goodrich R, Liu Z, Ostermeier GC. In silico and wet-bench identification of nuclear matrix attachment regions. Methods in Molecular Medicine. 108: 439-58. PMID 16028699 DOI: 10.1385/1-59259-850-1:439 |
0.312 |
|
2005 |
Khatri P, Drăghici S. Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics (Oxford, England). 21: 3587-95. PMID 15994189 DOI: 10.1093/Bioinformatics/Bti565 |
0.595 |
|
2005 |
Khatri P, Sellamuthu S, Malhotra P, Amin K, Done A, Draghici S. Recent additions and improvements to the Onto-Tools. Nucleic Acids Research. 33: W762-5. PMID 15980579 DOI: 10.1093/Nar/Gki472 |
0.628 |
|
2005 |
Khatri P, Done B, Rao A, Done A, Draghici S. A semantic analysis of the annotations of the human genome. Bioinformatics (Oxford, England). 21: 3416-21. PMID 15955782 DOI: 10.1093/Bioinformatics/Bti538 |
0.777 |
|
2005 |
Draghici S, Khatri P, Liu Y, Chase KJ, Bode EA, Kulesh DA, Wasieloski LP, Norwood DA, Reifman J. Identification of genomic signatures for the design of assays for the detection and monitoring of anthrax threats. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 248-59. PMID 15759631 |
0.458 |
|
2005 |
Desai V, Khatri P, Done A, Fridman A, Tainsky M, Draghici S. A novel bioinformatics technique for predicting condition-specific transcription factor binding sites Proceedings of the 2005 Ieee Symposium On Computational Intelligence in Bioinformatics and Computational Biology, Cibcb '05. 2005. |
0.543 |
|
2004 |
Yao B, Rakhade SN, Li Q, Ahmed S, Krauss R, Draghici S, Loeb JA. Accuracy of cDNA microarray methods to detect small gene expression changes induced by neuregulin on breast epithelial cells. Bmc Bioinformatics. 5: 99. PMID 15272935 DOI: 10.1186/1471-2105-5-99 |
0.411 |
|
2004 |
Khatri P, Bhavsar P, Bawa G, Draghici S. Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments. Nucleic Acids Research. 32: W449-56. PMID 15215428 DOI: 10.1093/Nar/Gkh409 |
0.617 |
|
2004 |
Pass HI, Liu Z, Wali A, Bueno R, Land S, Lott D, Siddiq F, Lonardo F, Carbone M, Draghici S. Gene expression profiles predict survival and progression of pleural mesothelioma. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 10: 849-59. PMID 14871960 DOI: 10.1158/1078-0432.Ccr-0607-3 |
0.329 |
|
2003 |
Draghici S, Kulaeva O, Hoff B, Petrov A, Shams S, Tainsky MA. Noise sampling method: an ANOVA approach allowing robust selection of differentially regulated genes measured by DNA microarrays. Bioinformatics (Oxford, England). 19: 1348-59. PMID 12874046 DOI: 10.1093/Bioinformatics/Btg165 |
0.396 |
|
2003 |
Draghici S, Khatri P, Bhavsar P, Shah A, Krawetz SA, Tainsky MA. Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate. Nucleic Acids Research. 31: 3775-81. PMID 12824416 DOI: 10.1093/Nar/Gkg624 |
0.623 |
|
2003 |
Kulaeva OI, Draghici S, Tang L, Kraniak JM, Land SJ, Tainsky MA. Epigenetic silencing of multiple interferon pathway genes after cellular immortalization. Oncogene. 22: 4118-27. PMID 12821946 DOI: 10.1038/Sj.Onc.1206594 |
0.398 |
|
2003 |
Ostermeier GC, Liu Z, Martins RP, Bharadwaj RR, Ellis J, Draghici S, Krawetz SA. Nuclear matrix association of the human beta-globin locus utilizing a novel approach to quantitative real-time PCR. Nucleic Acids Research. 31: 3257-66. PMID 12799453 DOI: 10.1093/Nar/Gkg424 |
0.307 |
|
2003 |
Draghici S, Khatri P, Shah A, Tainsky MA. Assessing the functional bias of commercial microarrays using the onto-compare database. Biotechniques. 55-61. PMID 12664686 DOI: 10.2144/Mar03Draghici |
0.584 |
|
2003 |
Anderle P, Duval M, Draghici S, Kuklin A, Littlejohn TG, Medrano JF, Vilanova D, Roberts MA. Gene expression databases and data mining. Biotechniques. 36-44. PMID 12664683 DOI: 10.2144/Mar03Anderle |
0.396 |
|
2003 |
Draghici S, Khatri P, Martins RP, Ostermeier GC, Krawetz SA. Global functional profiling of gene expression. Genomics. 81: 98-104. PMID 12620386 DOI: 10.1016/S0888-7543(02)00021-6 |
0.59 |
|
2002 |
Draghici S. Statistical intelligence: effective analysis of high-density microarray data. Drug Discovery Today. 7: S55-63. PMID 12047881 DOI: 10.1016/S1359-6446(02)02292-4 |
0.437 |
|
2002 |
Khatri P, Draghici S, Ostermeier GC, Krawetz SA. Profiling gene expression using onto-express. Genomics. 79: 266-70. PMID 11829497 DOI: 10.1006/Geno.2002.6698 |
0.611 |
|
2001 |
Draghici S, Martins RP, Leach RE, Krawetz SA. Expressed sequence tag data mining: The reality of virtual gene expression Proceedings of the Atlantic Symposium On Computational Biology and Genome Information Systems and Technolgoy, Cbgist 2001. 39-43. |
0.326 |
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