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Mugdha Khaladkar, Ph.D. - Publications

Affiliations: 
2009 New Jersey Institute of Technology, Newark, NJ, United States 
Area:
Computer Science, Bioinformatics Biology
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12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Dueck H, Khaladkar M, Kim TK, Spaethling JM, Francis C, Suresh S, Fisher SA, Seale P, Beck SG, Bartfai T, Kuhn B, Eberwine J, Kim J. Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation. Genome Biology. 16: 122. PMID 26056000 DOI: 10.1186/S13059-015-0683-4  0.395
2014 Francis C, Natarajan S, Lee MT, Khaladkar M, Buckley PT, Sul JY, Eberwine J, Kim J. Divergence of RNA localization between rat and mouse neurons reveals the potential for rapid brain evolution. Bmc Genomics. 15: 883. PMID 25301173 DOI: 10.1186/1471-2164-15-883  0.368
2014 Buckley PT, Khaladkar M, Kim J, Eberwine J. Cytoplasmic intron retention, function, splicing, and the sentinel RNA hypothesis. Wiley Interdisciplinary Reviews. Rna. 5: 223-30. PMID 24190870 DOI: 10.1002/Wrna.1203  0.453
2013 Khaladkar M, Buckley PT, Lee MT, Francis C, Eghbal MM, Chuong T, Suresh S, Kuhn B, Eberwine J, Kim J. Subcellular RNA sequencing reveals broad presence of cytoplasmic intron-sequence retaining transcripts in mouse and rat neurons. Plos One. 8: e76194. PMID 24098440 DOI: 10.1371/Journal.Pone.0076194  0.396
2012 Hua L, Wang JT, Ji X, Malhotra A, Khaladkar M, Shapiro BA, Zhang K. A method for discovering common patterns from two RNA secondary structures and its application to structural repeat detection. Journal of Bioinformatics and Computational Biology. 10: 1250001. PMID 22809414 DOI: 10.1142/S0219720012500011  0.424
2011 Khaladkar M, Smyda M, Hannenhalli S. Epigenomic and RNA structural correlates of polyadenylation. Rna Biology. 8: 529-37. PMID 21508683 DOI: 10.4161/Rna.8.3.15194  0.421
2008 Khaladkar M, Patel V, Bellofatto V, Wilusz J, Wang JT. Detecting conserved secondary structures in RNA molecules using constrained structural alignment. Computational Biology and Chemistry. 32: 264-72. PMID 18472302 DOI: 10.1016/J.Compbiolchem.2008.03.013  0.429
2008 Khaladkar M, Liu J, Wen D, Wang JT, Tian B. Mining small RNA structure elements in untranslated regions of human and mouse mRNAs using structure-based alignment. Bmc Genomics. 9: 189. PMID 18439287 DOI: 10.1186/1471-2164-9-189  0.495
2007 Khaladkar M, Bellofatto V, Wang JT, Tian B, Shapiro BA. RADAR: a web server for RNA data analysis and research. Nucleic Acids Research. 35: W300-4. PMID 17517784 DOI: 10.1093/Nar/Gkm253  0.438
2007 Khaladkar M, Bellofatto V, Wang JTL, Patel V, Nakayama MK. Constrained RNA structural alignment: Algorithms and application to motif detection in the untranslated regions of Trypanosoma brucei mRNAs Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 334-341. DOI: 10.1109/BIBE.2007.4375585  0.384
2007 Khaladkar M, Wang JTL. Detecting conserved RNA secondary structures in viral genomes: The RADAR approach Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4506: 222-227.  0.347
2006 Khaladkar M, Bellofatto V, Wang JTL, Tian B, Zhang K. RADAR: An interactive web-based toolkit for RNA data analysis and research Proceedings - Sixth Ieee Symposium On Bioinformatics and Bioengineering, Bibe 2006. 209-212. DOI: 10.1109/BIBE.2006.253336  0.367
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